pkgs/applications/science/biology/hh-suite/default.nix

   1 {
   2   lib,
   3   stdenv,
   4   fetchFromGitHub,
   5   fetchpatch,
   6   cmake,
   7   xxd,
   8   enableMpi ? false,
   9   mpi,
  10   openmp,
  11 }:
  12 stdenv.mkDerivation rec {
  13   pname = "hh-suite";
  14   version = "3.3.0";
  15
  16   src = fetchFromGitHub {
  17     owner = "soedinglab";
  18     repo = "hh-suite";
  19     rev = "v${version}";
  20     hash = "sha256-kjNqJddioCZoh/cZL3YNplweIGopWIGzCYQOnKDqZmw=";
  21   };
  22
  23   patches = [
  24     # Should be removable as soon as this upstream PR is merged: https://github.com/soedinglab/hh-suite/pull/357
  25     (fetchpatch {
  26       name = "fix-gcc13-build-issues.patch";
  27       url = "https://github.com/soedinglab/hh-suite/commit/cec47cba5dcd580e668b1ee507c9282fbdc8e7d7.patch";
  28       hash = "sha256-Msdmj9l8voPYXK0SSwUA6mEbFLBhTjjE/Kjp0VL4Kf4=";
  29     })
  30   ];
  31
  32   nativeBuildInputs = [
  33     cmake
  34     xxd
  35   ];
  36   cmakeFlags =
  37     lib.optional stdenv.hostPlatform.isx86 "-DHAVE_SSE2=1"
  38     ++ lib.optional stdenv.hostPlatform.isAarch "-DHAVE_ARM8=1"
  39     ++ lib.optional stdenv.hostPlatform.avx2Support "-DHAVE_AVX2=1"
  40     ++ lib.optional stdenv.hostPlatform.sse4_1Support "-DHAVE_SSE4_1=1";
  41
  42   buildInputs = lib.optional stdenv.cc.isClang openmp ++ lib.optional enableMpi mpi;
  43
  44   meta = with lib; {
  45     description = "Remote protein homology detection suite";
  46     homepage = "https://github.com/soedinglab/hh-suite";
  47     license = licenses.gpl3Plus;
  48     maintainers = with maintainers; [ natsukium ];
  49     platforms = platforms.unix;
  50   };
  51 }