pkgs/applications/science/biology/sumatools/default.nix

   1 {
   2   lib,
   3   gccStdenv,
   4   fetchFromGitLab,
   5   zlib,
   6 }:
   7
   8 let
   9   stdenv = gccStdenv;
  10   meta = with lib; {
  11     description = "Fast and exact comparison and clustering of sequences";
  12     homepage = "https://metabarcoding.org/sumatra";
  13     maintainers = [ maintainers.bzizou ];
  14     platforms = platforms.unix;
  15   };
  16
  17 in
  18 rec {
  19
  20   # Suma library
  21   sumalibs = stdenv.mkDerivation rec {
  22     version = "1.0.34";
  23     pname = "sumalibs";
  24     src = fetchFromGitLab {
  25       domain = "git.metabarcoding.org";
  26       owner = "obitools";
  27       repo = pname;
  28       rev = "sumalib_v${version}";
  29       sha256 = "0hwkrxzfz7m5wdjvmrhkjg8kis378iaqr5n4nhdhkwwhn8x1jn5a";
  30     };
  31     makeFlags = [ "PREFIX=$(out)" ];
  32     inherit meta;
  33   };
  34
  35   # Sumatra
  36   sumatra = stdenv.mkDerivation rec {
  37     version = "1.0.34";
  38     pname = "sumatra";
  39     src = fetchFromGitLab {
  40       domain = "git.metabarcoding.org";
  41       owner = "obitools";
  42       repo = pname;
  43       rev = "${pname}_v${version}";
  44       sha256 = "1bbpbdkshdc3xffqnr1qfy8qk64ldsmdc3s8mrcrlx132rgbi5f6";
  45     };
  46     buildInputs = [
  47       sumalibs
  48       zlib
  49     ];
  50     makeFlags = [
  51       "LIBSUMA=${sumalibs}/lib/libsuma.a"
  52       "LIBSUMAPATH=-L${sumalibs}"
  53       "PREFIX=$(out)"
  54     ];
  55     inherit meta;
  56   };
  57
  58   # Sumaclust
  59   sumaclust = stdenv.mkDerivation rec {
  60     version = "1.0.34";
  61     pname = "sumaclust";
  62     src = fetchFromGitLab {
  63       domain = "git.metabarcoding.org";
  64       owner = "obitools";
  65       repo = pname;
  66       rev = "${pname}_v${version}";
  67       sha256 = "0x8yi3k3jxhmv2krp4rcjlj2f9zg0qrk7gx4kpclf9c3yxgsgrds";
  68     };
  69     buildInputs = [ sumalibs ];
  70     makeFlags = [
  71       "LIBSUMA=${sumalibs}/lib/libsuma.a"
  72       "LIBSUMAPATH=-L${sumalibs}"
  73       "PREFIX=$(out)"
  74     ];
  75     inherit meta;
  76   };
  77 }