pkgs/by-name/me/megahit/package.nix

   1 {
   2   lib,
   3   stdenv,
   4   fetchFromGitHub,
   5   fetchpatch,
   6   cmake,
   7   zlib,
   8 }:
   9
  10 stdenv.mkDerivation rec {
  11   pname = "megahit";
  12   version = "1.2.9";
  13
  14   src = fetchFromGitHub {
  15     owner = "voutcn";
  16     repo = "megahit";
  17     rev = "v${version}";
  18     sha256 = "1r5d9nkdmgjsbrpj43q9hy3s8jwsabaz3ji561v18hy47v58923c";
  19   };
  20
  21   patches = [
  22     # Fix gcc-13 build failure:
  23     #   https://github.com/voutcn/megahit/pull/366
  24     (fetchpatch {
  25       name = "gcc-13.patch";
  26       url = "https://github.com/voutcn/megahit/commit/4cb2f793503087163bda8592222f105f27e33e66.patch";
  27       hash = "sha256-b5mhzif+OPcMjmg+BnaUc5CB6Acn/KTBOJEw+WYEhbs=";
  28     })
  29   ];
  30
  31   nativeBuildInputs = [ cmake ];
  32   buildInputs = [ zlib ];
  33
  34   cmakeFlags = lib.optionals stdenv.hostPlatform.isStatic [
  35     "-DSTATIC_BUILD=ON"
  36   ];
  37   meta = with lib; {
  38     description = "Ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph";
  39     license = licenses.gpl3;
  40     homepage = "https://github.com/voutcn/megahit";
  41     maintainers = with maintainers; [ luispedro ];
  42     platforms = [ "x86_64-linux" ];
  43   };
  44 }