pkgs/development/python-modules/deid/default.nix

   1 {
   2   lib,
   3   buildPythonPackage,
   4   fetchFromGitHub,
   5   pythonOlder,
   6   pytestCheckHook,
   7   matplotlib,
   8   pydicom,
   9   python-dateutil,
  10   setuptools,
  11 }:
  12
  13 let
  14   deid-data = buildPythonPackage rec {
  15     pname = "deid-data";
  16     version = "unstable-2022-12-06";
  17     pyproject = true;
  18
  19     disabled = pythonOlder "3.7";
  20
  21     build-system = [ setuptools ];
  22
  23     dependencies = [ pydicom ];
  24
  25     src = fetchFromGitHub {
  26       owner = "pydicom";
  27       repo = "deid-data";
  28       rev = "5750d25a5048fba429b857c16bf48b0139759644";
  29       hash = "sha256-c8NBAN53NyF9dPB7txqYtM0ac0Y+Ch06fMA1LrIUkbc=";
  30     };
  31
  32     meta = {
  33       description = "Supplementary data for deid package";
  34       homepage = "https://github.com/pydicom/deid-data";
  35       license = lib.licenses.mit;
  36       maintainers = [ lib.maintainers.bcdarwin ];
  37     };
  38   };
  39 in
  40 buildPythonPackage rec {
  41   pname = "deid";
  42   version = "0.3.25";
  43   pyproject = true;
  44
  45   disabled = pythonOlder "3.7";
  46
  47   # Pypi version has no tests
  48   src = fetchFromGitHub {
  49     owner = "pydicom";
  50     repo = pname;
  51     # the github repo does not contain Pypi version tags:
  52     rev = "830966d52846c6b721fabb4cc1c75f39eabd55cc";
  53     hash = "sha256-+slwnQSeRHpoCsvZ24Gq7rOBpQL37a6Iqrj4Mqj6PCo=";
  54   };
  55
  56   build-system = [ setuptools ];
  57
  58   dependencies = [
  59     matplotlib
  60     pydicom
  61     python-dateutil
  62   ];
  63
  64   nativeCheckInputs = [
  65     deid-data
  66     pytestCheckHook
  67   ];
  68
  69   pythonImportsCheck = [ "deid" ];
  70
  71   meta = {
  72     description = "Best-effort anonymization for medical images";
  73     mainProgram = "deid";
  74     changelog = "https://github.com/pydicom/deid/blob/${version}/CHANGELOG.md";
  75     homepage = "https://pydicom.github.io/deid";
  76     license = lib.licenses.mit;
  77     maintainers = with lib.maintainers; [ bcdarwin ];
  78   };
  79 }