pkgs/development/python-modules/niworkflows/default.nix

   1 {
   2   lib,
   3   buildPythonPackage,
   4   fetchFromGitHub,
   5   hatch-vcs,
   6   hatchling,
   7   pytestCheckHook,
   8   attrs,
   9   importlib-resources,
  10   jinja2,
  11   looseversion,
  12   matplotlib,
  13   nibabel,
  14   nilearn,
  15   nipype,
  16   nitransforms,
  17   numpy,
  18   packaging,
  19   pandas,
  20   pybids,
  21   pyyaml,
  22   scikit-image,
  23   scipy,
  24   seaborn,
  25   svgutils,
  26   templateflow,
  27   traits,
  28   transforms3d,
  29 }:
  30
  31 buildPythonPackage rec {
  32   pname = "niworkflows";
  33   version = "1.10.2";
  34   pyproject = true;
  35
  36   src = fetchFromGitHub {
  37     owner = "nipreps";
  38     repo = "niworkflows";
  39     tag = version;
  40     hash = "sha256-29ZxLuKrvgCIOMMCUpi0HHhlNlgqUrUrSCiikwecmKw=";
  41   };
  42
  43   pythonRelaxDeps = [ "traits" ];
  44
  45   build-system = [
  46     hatch-vcs
  47     hatchling
  48   ];
  49
  50   dependencies = [
  51     attrs
  52     importlib-resources
  53     jinja2
  54     looseversion
  55     matplotlib
  56     nibabel
  57     nilearn
  58     nipype
  59     nitransforms
  60     numpy
  61     packaging
  62     pandas
  63     pybids
  64     pyyaml
  65     scikit-image
  66     scipy
  67     seaborn
  68     svgutils
  69     templateflow
  70     traits
  71     transforms3d
  72   ];
  73
  74   env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
  75
  76   nativeCheckInputs = [ pytestCheckHook ];
  77   preCheck = ''export HOME=$(mktemp -d)'';
  78   pytestFlagsArray = [ "niworkflows" ];
  79   # try to download data:
  80   disabledTests = [
  81     "test_GenerateCifti"
  82     "ROIsPlot"
  83     "ROIsPlot2"
  84     "test_SimpleShowMaskRPT"
  85     "test_cifti_surfaces_plot"
  86     "niworkflows.utils.misc.get_template_specs"
  87     "niworkflows.interfaces.cifti._prepare_cifti"
  88   ];
  89   disabledTestPaths = [ "niworkflows/tests/test_registration.py" ];
  90
  91   pythonImportsCheck = [ "niworkflows" ];
  92
  93   meta = with lib; {
  94     description = "Common workflows for MRI (anatomical, functional, diffusion, etc.)";
  95     mainProgram = "niworkflows-boldref";
  96     homepage = "https://github.com/nipreps/niworkflows";
  97     changelog = "https://github.com/nipreps/niworkflows/blob/${src.rev}/CHANGES.rst";
  98     license = licenses.asl20;
  99     maintainers = with maintainers; [ bcdarwin ];
 100   };
 101 }