pkgs/development/python-modules/stytra/default.nix

   1 {
   2   lib,
   3   anytree,
   4   arrayqueues,
   5   av,
   6   buildPythonPackage,
   7   colorspacious,
   8   fetchPypi,
   9   flammkuchen,
  10   git,
  11   gitpython,
  12   imageio,
  13   imageio-ffmpeg,
  14   lightparam,
  15   matplotlib,
  16   numba,
  17   numpy,
  18   opencv4,
  19   pandas,
  20   pims,
  21   pyqt5,
  22   pyqtgraph,
  23   pyserial,
  24   pytestCheckHook,
  25   pythonOlder,
  26   qdarkstyle,
  27   qimage2ndarray,
  28   scikit-image,
  29   scipy,
  30   tables,
  31 }:
  32
  33 buildPythonPackage rec {
  34   pname = "stytra";
  35   version = "0.8.34";
  36   pyproject = true;
  37   disabled = pythonOlder "3.7";
  38
  39   src = fetchPypi {
  40     inherit pname version;
  41     sha256 = "aab9d07575ef599a9c0ae505656e3c03ec753462df3c15742f1f768f2b578f0a";
  42   };
  43
  44   patches = [
  45     # https://github.com/portugueslab/stytra/issues/87
  46     ./0000-workaround-pyqtgraph.patch
  47   ];
  48
  49   propagatedBuildInputs = [
  50     opencv4
  51     pyqt5
  52     pyqtgraph
  53     numpy
  54     scipy
  55     numba
  56     pandas
  57     tables
  58     git
  59     scikit-image
  60     matplotlib
  61     qdarkstyle
  62     gitpython
  63     anytree
  64     qimage2ndarray
  65     flammkuchen
  66     pims
  67     colorspacious
  68     lightparam
  69     imageio
  70     imageio-ffmpeg
  71     arrayqueues
  72     av
  73   ];
  74
  75   nativeCheckInputs = [
  76     pytestCheckHook
  77     pyserial
  78   ];
  79
  80   disabledTestPaths = [
  81     # Crashes python
  82     "stytra/tests/test_z_experiments.py"
  83   ];
  84
  85   meta = with lib; {
  86     description = "Modular package to control stimulation and track behaviour";
  87     homepage = "https://github.com/portugueslab/stytra";
  88     license = licenses.gpl3Plus;
  89     maintainers = with maintainers; [ tbenst ];
  90   };
  91 }