pkgs/applications/science/biology/somatic-sniper/default.nix

   1 {lib, stdenv, fetchFromGitHub, cmake, zlib, ncurses}:
   2
   3 stdenv.mkDerivation rec {
   4   pname = "somatic-sniper";
   5   version = "1.0.5.0";
   6
   7   src = fetchFromGitHub {
   8     owner = "genome";
   9     repo = "somatic-sniper";
  10     rev = "v${version}";
  11     sha256 = "0lk7p9sp6mp50f6w1nppqhr40fcwy1asw06ivw8w8jvvnwaqf987";
  12   };
  13
  14   patches = [ ./somatic-sniper.patch ];
  15
  16   nativeBuildInputs = [ cmake ];
  17   buildInputs = [ zlib ncurses ];
  18
  19   enableParallelBuilding = false;
  20
  21   meta = with lib; {
  22     description = "Identify single nucleotide positions that are different between tumor and normal";
  23     mainProgram = "bam-somaticsniper";
  24     license = licenses.mit;
  25     homepage = "https://github.com/genome/somatic-sniper";
  26     maintainers = with maintainers; [ jbedo ];
  27     platforms = platforms.linux;
  28   };
  29
  30 }