pkgs/development/python-modules/orange3/default.nix

   1 { lib
   2 , baycomp
   3 , bottleneck
   4 , buildPythonPackage
   5 , chardet
   6 , copyDesktopItems
   7 , cython
   8 , fetchFromGitHub
   9 , fetchurl
  10 , httpx
  11 , joblib
  12 , keyring
  13 , keyrings-alt
  14 , makeDesktopItem
  15 , matplotlib
  16 , nix-update-script
  17 , numpy
  18 , oldest-supported-numpy
  19 , openpyxl
  20 , opentsne
  21 , orange-canvas-core
  22 , orange-widget-base
  23 , pandas
  24 , pyqtgraph
  25 , pyqtwebengine
  26 , python
  27 , python-louvain
  28 , pythonOlder
  29 , pyyaml
  30 , qt5
  31 , qtconsole
  32 , recommonmark
  33 , requests
  34 , scikit-learn
  35 , scipy
  36 , serverfiles
  37 , setuptools
  38 , sphinx
  39 , wheel
  40 , xlrd
  41 , xlsxwriter
  42 }:
  43
  44 let
  45   self = buildPythonPackage rec {
  46     pname = "orange3";
  47     version = "3.36.2";
  48
  49     disabled = pythonOlder "3.7";
  50
  51     src = fetchFromGitHub {
  52       owner = "biolab";
  53       repo = "orange3";
  54       rev = "refs/tags/${version}";
  55       hash = "sha256-v9lk5vGhBaR2PHZ+Jq0hy1WaCsbeLe+vZlTaHBkfacU=";
  56     };
  57
  58     postPatch = ''
  59       substituteInPlace pyproject.toml \
  60         --replace "setuptools>=41.0.0,<50.0" "setuptools"
  61       sed -i 's;\(scikit-learn\)[^$]*;\1;g' requirements-core.txt
  62       sed -i 's;pyqtgraph[^$]*;;g' requirements-gui.txt # TODO: remove after bump with a version greater than 0.13.1
  63     '';
  64
  65     nativeBuildInputs = [
  66       copyDesktopItems
  67       cython
  68       oldest-supported-numpy
  69       qt5.wrapQtAppsHook
  70       recommonmark
  71       setuptools
  72       sphinx
  73       wheel
  74     ];
  75
  76     enableParallelBuilding = true;
  77
  78     propagatedBuildInputs = [
  79       numpy
  80       scipy
  81       chardet
  82       openpyxl
  83       opentsne
  84       qtconsole
  85       bottleneck
  86       matplotlib
  87       joblib
  88       requests
  89       keyring
  90       scikit-learn
  91       pandas
  92       pyqtwebengine
  93       serverfiles
  94       orange-canvas-core
  95       python-louvain
  96       xlrd
  97       xlsxwriter
  98       httpx
  99       pyqtgraph
 100       orange-widget-base
 101       keyrings-alt
 102       pyyaml
 103       baycomp
 104     ];
 105
 106     # FIXME: ImportError: cannot import name '_variable' from partially initialized module 'Orange.data' (most likely due to a circular import) (/build/source/Orange/data/__init__.py)
 107     doCheck = false;
 108
 109     pythonImportsCheck = [ "Orange" "Orange.data._variable" ];
 110
 111     desktopItems = [
 112       (makeDesktopItem {
 113         name = "orange";
 114         exec = "orange-canvas";
 115         desktopName = "Orange Data Mining";
 116         genericName = "Data Mining Suite";
 117         comment = "Explore, analyze, and visualize your data";
 118         icon = "orange-canvas";
 119         mimeTypes = [ "application/x-extension-ows" ];
 120         categories = [ "Science" "Education" "ArtificialIntelligence" "DataVisualization" "NumericalAnalysis" "Qt" ];
 121         keywords = [ "Machine Learning" "Scientific Visualization" "Statistical Analysis" ];
 122       })
 123     ];
 124
 125     postInstall = ''
 126       wrapProgram $out/bin/orange-canvas \
 127         "${"$"}{qtWrapperArgs[@]}"
 128       mkdir -p $out/share/icons/hicolor/{256x256,48x48}/apps
 129       cp distribute/icon-256.png $out/share/icons/hicolor/256x256/apps/orange-canvas.png
 130       cp distribute/icon-48.png $out/share/icons/hicolor/48x48/apps/orange-canvas.png
 131     '';
 132
 133     passthru = {
 134       updateScript = nix-update-script { };
 135       tests.unittests = self.overridePythonAttrs (old: {
 136         pname = "${old.pname}-tests";
 137         format = "other";
 138
 139         preCheck = ''
 140           export HOME=$(mktemp -d)
 141           export QT_PLUGIN_PATH="${qt5.qtbase.bin}/${qt5.qtbase.qtPluginPrefix}"
 142           export QT_QPA_PLATFORM_PLUGIN_PATH="${qt5.qtbase.bin}/lib/qt-${qt5.qtbase.version}/plugins";
 143           export QT_QPA_PLATFORM=offscreen
 144
 145           rm Orange -rf
 146           cp -r ${self}/${python.sitePackages}/Orange .
 147           chmod +w -R .
 148
 149           rm Orange/tests/test_url_reader.py # uses network
 150           rm Orange/tests/test_ada_boost.py # broken: The 'base_estimator' parameter of AdaBoostRegressor must be an object implementing 'fit' and 'predict' or a str among {'deprecated'}. Got None instead.
 151         '';
 152
 153         checkPhase = ''
 154           runHook preCheck
 155           ${python.interpreter} -m unittest -b -v ./Orange/**/test*.py
 156           runHook postCheck
 157         '';
 158
 159         postInstall = "";
 160
 161         doBuild = false;
 162         doInstall = false;
 163
 164         nativeBuildInputs = [ self ] ++ old.nativeBuildInputs;
 165       });
 166     };
 167
 168     meta = with lib; {
 169       description = "Data mining and visualization toolbox for novice and expert alike";
 170       homepage = "https://orangedatamining.com/";
 171       changelog = "https://github.com/biolab/orange3/blob/${version}/CHANGELOG.md";
 172       license = with licenses; [ gpl3Plus ];
 173       maintainers = with maintainers; [ lucasew ];
 174       mainProgram = "orange-canvas";
 175     };
 176   };
 177 in
 178 self