pkgs/development/python-modules/sourmash/default.nix

   1 { lib
   2 , fetchPypi
   3 , buildPythonPackage
   4 , pythonOlder
   5 , rustPlatform
   6 , bitstring
   7 , cachetools
   8 , cffi
   9 , deprecation
  10 , iconv
  11 , matplotlib
  12 , numpy
  13 , scipy
  14 , screed
  15 , hypothesis
  16 , pytest-xdist
  17 , pyyaml
  18 , pytestCheckHook
  19 }:
  20
  21 buildPythonPackage rec {
  22   pname = "sourmash";
  23   version = "4.8.4";
  24   format = "pyproject";
  25   disabled = pythonOlder "3.8";
  26
  27   src = fetchPypi {
  28     inherit pname version;
  29     hash = "sha256-Q1hMESwzEHGXcd4XW4nLqU8cLTCxrqRgAOr1qB77roo=";
  30   };
  31
  32   cargoDeps = rustPlatform.fetchCargoTarball {
  33     inherit src;
  34     name = "${pname}-${version}";
  35     hash = "sha256-HisWvJgx15OfYoMzzqYm1JyY1/jmGXBSZZmuNaKTDjI=";
  36   };
  37
  38   nativeBuildInputs = with rustPlatform; [
  39     cargoSetupHook
  40     maturinBuildHook
  41   ];
  42
  43   buildInputs = [ iconv ];
  44
  45   propagatedBuildInputs = [
  46     bitstring
  47     cachetools
  48     cffi
  49     deprecation
  50     matplotlib
  51     numpy
  52     scipy
  53     screed
  54   ];
  55
  56   pythonImportsCheck = [ "sourmash" ];
  57   nativeCheckInputs = [
  58     hypothesis
  59     pytest-xdist
  60     pytestCheckHook
  61     pyyaml
  62   ];
  63
  64   # TODO(luizirber): Working on fixing these upstream
  65   disabledTests = [
  66     "test_compare_no_such_file"
  67     "test_do_sourmash_index_multiscaled_rescale_fail"
  68     "test_metagenome_kreport_out_fail"
  69   ];
  70
  71   meta = with lib; {
  72     description = "Quickly search, compare, and analyze genomic and metagenomic data sets";
  73     homepage = "https://sourmash.bio";
  74     changelog = "https://github.com/sourmash-bio/sourmash/releases/tag/v${version}";
  75     maintainers = with maintainers; [ luizirber ];
  76     license = licenses.bsd3;
  77   };
  78 }