pkgs/development/python-modules/sunpy/default.nix

   1 { lib
   2 , stdenv
   3 , asdf
   4 , astropy
   5 , astropy-extension-helpers
   6 , astropy-helpers
   7 , beautifulsoup4
   8 , buildPythonPackage
   9 , drms
  10 , fetchPypi
  11 , glymur
  12 , h5netcdf
  13 , hypothesis
  14 , lxml
  15 , matplotlib
  16 , numpy
  17 , pandas
  18 , parfive
  19 , pytest-astropy
  20 , pytestCheckHook
  21 , pytest-mock
  22 , python-dateutil
  23 , pythonOlder
  24 , scikit-image
  25 , scipy
  26 , setuptools-scm
  27 , sqlalchemy
  28 , tqdm
  29 , zeep
  30 }:
  31
  32 buildPythonPackage rec {
  33   pname = "sunpy";
  34   version = "5.0.1";
  35   format = "setuptools";
  36
  37   disabled = pythonOlder "3.8";
  38
  39   src = fetchPypi {
  40     inherit pname version;
  41     hash = "sha256-7tmyywyfQw1T9qr5UbPH/KR+AmmhSaHunkeUGRKDl+Q=";
  42   };
  43
  44   nativeBuildInputs = [
  45     astropy-extension-helpers
  46     setuptools-scm
  47   ];
  48
  49   propagatedBuildInputs = [
  50     astropy
  51     astropy-helpers
  52     numpy
  53     parfive
  54   ];
  55
  56   passthru.optional-dependencies = {
  57     asdf = [
  58       asdf
  59       # asdf-astropy
  60     ];
  61     database = [
  62       sqlalchemy
  63     ];
  64     image = [
  65       scikit-image
  66       scipy
  67     ];
  68     net = [
  69       beautifulsoup4
  70       drms
  71       python-dateutil
  72       tqdm
  73       zeep
  74     ];
  75     jpeg2000 = [
  76       glymur
  77       lxml
  78     ];
  79     timeseries = [
  80       # cdflib
  81       h5netcdf
  82       # h5py
  83       matplotlib
  84       pandas
  85     ];
  86   };
  87
  88   nativeCheckInputs = [
  89     hypothesis
  90     pytest-astropy
  91     pytest-mock
  92     pytestCheckHook
  93   ] ++ passthru.optional-dependencies.asdf
  94     ++ passthru.optional-dependencies.database
  95     ++ passthru.optional-dependencies.image
  96     ++ passthru.optional-dependencies.net
  97     ++ passthru.optional-dependencies.timeseries;
  98
  99   postPatch = ''
 100     substituteInPlace setup.cfg \
 101       --replace " --dist no" ""
 102   '';
 103
 104   # darwin has write permission issues
 105   doCheck = stdenv.isLinux;
 106
 107   preCheck = ''
 108     export HOME=$(mktemp -d)
 109   '';
 110
 111   disabledTests = [
 112     "rst"
 113     "test_sunpy_warnings_logging"
 114     "test_main_nonexisting_module"
 115     "test_main_stdlib_module"
 116     "test_find_dependencies"
 117   ];
 118
 119   disabledTestPaths = [
 120     # Tests are very slow
 121     "sunpy/net/tests/test_fido.py"
 122     # asdf.extensions plugin issue
 123     "sunpy/io/special/asdf/resources/schemas/"
 124     "sunpy/io/special/asdf/resources/manifests/sunpy-1.0.0.yaml"
 125     # Requires mpl-animators package
 126     "sunpy/map/tests/test_compositemap.py"
 127     "sunpy/map/tests/test_mapbase.py"
 128     "sunpy/map/tests/test_mapsequence.py"
 129     "sunpy/map/tests/test_plotting.py"
 130     "sunpy/map/tests/test_reproject_to.py"
 131     "sunpy/net/tests/test_helioviewer.py"
 132     "sunpy/timeseries/tests/test_timeseriesbase.py"
 133     "sunpy/visualization/animator/tests/test_basefuncanimator.py"
 134     "sunpy/visualization/animator/tests/test_mapsequenceanimator.py"
 135     "sunpy/visualization/animator/tests/test_wcs.py"
 136     "sunpy/visualization/colormaps/tests/test_cm.py"
 137     # Requires cdflib package
 138     "sunpy/timeseries/tests/test_timeseries_factory.py"
 139     # Requires jplephem
 140     "sunpy/image/tests/test_transform.py"
 141     "sunpy/io/special/asdf/tests/test_coordinate_frames.py"
 142     "sunpy/io/special/asdf/tests/test_genericmap.py"
 143     # distutils is deprecated
 144     "sunpy/io/setup_package.py"
 145   ];
 146
 147   pytestFlagsArray = [
 148     "-W"
 149     "ignore::DeprecationWarning"
 150   ];
 151
 152   # Wants a configuration file
 153   # pythonImportsCheck = [
 154   #   "sunpy"
 155   # ];
 156
 157   meta = with lib; {
 158     description = "Python for Solar Physics";
 159     homepage = "https://sunpy.org";
 160     license = licenses.bsd2;
 161     maintainers = with maintainers; [ ];
 162     broken = true;
 163   };
 164 }