pkgs/development/python-modules/intensity-normalization/default.nix

   1 { lib
   2 , buildPythonPackage
   3 , fetchPypi
   4 , pythonOlder
   5 , pytestCheckHook
   6 , pythonRelaxDepsHook
   7 , matplotlib
   8 , nibabel
   9 , numpy
  10 , pydicom
  11 , pymedio
  12 , scikit-fuzzy
  13 , scikit-image
  14 , scikit-learn
  15 , scipy
  16 , simpleitk
  17 , statsmodels
  18 }:
  19
  20 buildPythonPackage rec {
  21   pname = "intensity-normalization";
  22   version = "2.2.4";
  23   format = "setuptools";
  24
  25   disabled = pythonOlder "3.6";
  26
  27   src = fetchPypi {
  28     pname = "intensity_normalization";
  29     inherit version;
  30     hash = "sha256-s/trDIRoqLFj3NO+iv3E+AEB4grBAHDlEL6+TCdsgmg=";
  31   };
  32
  33   postPatch = ''
  34     substituteInPlace setup.cfg --replace "!=3.10.*," "" --replace "!=3.11.*" ""
  35     substituteInPlace setup.cfg --replace "pytest-runner" ""
  36   '';
  37
  38   nativeBuildInputs = [ pythonRelaxDepsHook ];
  39   pythonRelaxDeps = [ "nibabel" ];
  40
  41   propagatedBuildInputs = [
  42     matplotlib
  43     nibabel
  44     numpy
  45     pydicom
  46     pymedio
  47     scikit-fuzzy
  48     scikit-image
  49     scikit-learn
  50     scipy
  51     simpleitk
  52     statsmodels
  53   ];
  54
  55   nativeCheckInputs = [
  56     pytestCheckHook
  57   ];
  58   pytestFlagsArray = [ "tests" ];
  59
  60   pythonImportsCheck = [
  61     "intensity_normalization"
  62     "intensity_normalization.normalize"
  63     "intensity_normalization.plot"
  64     "intensity_normalization.util"
  65   ];
  66
  67
  68   meta = with lib; {
  69     homepage = "https://github.com/jcreinhold/intensity-normalization";
  70     description = "MRI intensity normalization tools";
  71     maintainers = with maintainers; [ bcdarwin ];
  72     license = licenses.asl20;
  73   };
  74 }