pkgs/development/python-modules/ome-zarr/default.nix

   1 { lib
   2 , buildPythonPackage
   3 , pythonOlder
   4 , fetchFromGitHub
   5 , pytestCheckHook
   6 , aiohttp
   7 , dask
   8 , distributed
   9 , fsspec
  10 , numpy
  11 , requests
  12 , scikit-image
  13 , toolz
  14 , zarr
  15 }:
  16
  17 buildPythonPackage rec {
  18   pname = "ome-zarr";
  19   version = "0.8.3";
  20   format = "setuptools";
  21   disabled = pythonOlder "3.6";
  22
  23   src = fetchFromGitHub {
  24     owner = "ome";
  25     repo = "ome-zarr-py";
  26     rev = "refs/tags/v${version}";
  27     hash = "sha256-JuNXVse/n/lFbNaLwMcir8NBHiRxcbYvtbxePwI6YoY=";
  28   };
  29
  30   propagatedBuildInputs = [
  31     numpy
  32     dask
  33     distributed
  34     zarr
  35     fsspec
  36     aiohttp
  37     requests
  38     scikit-image
  39     toolz
  40   ] ++ fsspec.passthru.optional-dependencies.s3;
  41
  42   nativeCheckInputs = [
  43     pytestCheckHook
  44   ];
  45
  46   disabledTests = [
  47     # attempts to access network
  48     "test_s3_info"
  49   ];
  50
  51   pythonImportsCheck = [
  52     "ome_zarr"
  53     "ome_zarr.cli"
  54     "ome_zarr.csv"
  55     "ome_zarr.data"
  56     "ome_zarr.format"
  57     "ome_zarr.io"
  58     "ome_zarr.reader"
  59     "ome_zarr.writer"
  60     "ome_zarr.scale"
  61     "ome_zarr.utils"
  62   ];
  63
  64   meta = with lib; {
  65     description = "Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.";
  66     homepage = "https://pypi.org/project/ome-zarr";
  67     changelog = "https://github.com/ome/ome-zarr-py/blob/v${version}/CHANGELOG.md";
  68     license = licenses.bsd2;
  69     maintainers = [ maintainers.bcdarwin ];
  70     mainProgram = "ome_zarr";
  71   };
  72 }