Makefile

   1 DIAGRAMS=llp.dia tool.dia model.dia output.dia data.dia xrsl_file.dia fcon.dia nonmem.dia moshog_client.dia
   2
   3 DIAGRAMS=$(addprefix diagrams/,$(DIAGRAMS))
   4
   5 BIN=bootstrap cdd execute llp scm
   6
   7 HTML_STUBS=_synopsis.php _description.php _options.php _examples.php
   8
   9 DOCUMENTS=$(foreach pre,$(BIN),$(foreach suff,$(HTML_STUBS),$(addprefix html/$(pre),$(suff))))
  10
  11 DIA2CODE=dia2code
  12 FILLSCRIPT=perl ./bin/fill_diacode.pl
  13 DIRPM=libgen/
  14 DIRSUBS=lib/
  15 PERLDIRS=-I/home/pontus/perl
  16 LIBFILES=debug.pm \
  17         ui.pm \
  18         status_bar.pm \
  19         nonmem.pm \
  20         moshog_client.pm \
  21         file.pm \
  22         data/individual.pm \
  23         data.pm \
  24         output/problem/subproblem.pm \
  25         output/problem.pm \
  26         output.pm \
  27         grid/nordugrid/xrsl_file.pm \
  28         fcon.pm \
  29         table_file.pm \
  30         extra_data.pm \
  31         model/problem/record/option.pm \
  32         model/problem/record/init_option.pm \
  33         model/problem/record/theta_option.pm \
  34         model/problem/record.pm \
  35         model/problem/code_record.pm \
  36         model/problem/init_record.pm \
  37         model/problem/abbreviated.pm \
  38         model/problem/aes.pm \
  39         model/problem/aesinit.pm \
  40         model/problem/contr.pm \
  41         model/problem/covariance.pm \
  42         model/problem/data.pm \
  43         model/problem/des.pm \
  44         model/problem/error.pm \
  45         model/problem/estimation.pm \
  46         model/problem/infn.pm \
  47         model/problem/input.pm \
  48         model/problem/msfi.pm \
  49         model/problem/mix.pm \
  50         model/problem/model.pm \
  51         model/problem/nonparametric.pm \
  52         model/problem/omega.pm \
  53         model/problem/pk.pm \
  54         model/problem/prior.pm \
  55         model/problem/problem.pm \
  56         model/problem/pred.pm \
  57         model/problem/scatter.pm \
  58         model/problem/sigma.pm \
  59         model/problem/simulation.pm \
  60         model/problem/subroutine.pm \
  61         model/problem/table.pm \
  62         model/problem/theta.pm \
  63         model/problem/tol.pm \
  64         model/cwres_module.pm \
  65         model/mirror_plot_module.pm \
  66         model/iofv_module.pm \
  67         model/shrinkage_module.pm \
  68         model/nonparametric_module.pm \
  69         model/problem.pm \
  70         model.pm \
  71         tool.pm \
  72         tool/modelfit.pm \
  73         tool/llp.pm \
  74         tool/cdd.pm \
  75         tool/cdd/jackknife.pm \
  76         tool/sse.pm \
  77         tool/npc.pm \
  78         tool/pind.pm \
  79         tool/nonpb.pm \
  80         tool/bootstrap.pm \
  81         tool/scm/config_file.pm \
  82         tool/scm.pm \
  83         tool/xv_step.pm \
  84         tool/xv.pm \
  85
  86 PERLFILES=$(addprefix lib/,$(LIBFILES))
  87
  88 RELFILES=$(addprefix PsN-Source/lib/,$(LIBFILES)) \
  89         $(addprefix PsN-Source/, \
  90         lib/PsN_template.pm \
  91         lib/common_options.pm \
  92         lib/psn.conf \
  93         lib/OSspecific.pm \
  94         lib/hotkey.pm \
  95         lib/ext/Math/SigFigs.pm \
  96         lib/ext/Math/MatrixReal.pm \
  97         lib/ext/Statistics/Distributions.pm \
  98         lib/ext/Parallel/ForkManager.pm \
  99         lib/ext/Config/Tiny.pm \
 100         lib/ext/Color/Output.pm \
 101         lib/ext/File/HomeDir.pm \
 102         lib/ext/IPC/Run3.pm \
 103         lib/matlab/bca.m \
 104         lib/matlab/histograms.m \
 105         lib/matlab/profiles.m \
 106         lib/R-scripts/llp.R \
 107         lib/R-scripts/cdd.R \
 108         lib/R-scripts/bootstrap.R \
 109         bin/execute \
 110         bin/cdd \
 111         bin/mc_cdd \
 112         bin/sse \
 113         bin/pind \
 114         bin/nonpb \
 115         bin/npc \
 116         bin/vpc \
 117         bin/llp \
 118         bin/scm \
 119         bin/bootstrap \
 120         bin/sumo \
 121         bin/single_valued_columns \
 122         bin/check_termination \
 123         bin/create_extra_data_model \
 124         bin/create_cont_model \
 125         bin/create_cont_data \
 126         bin/create_subsets \
 127         bin/unwrap_data \
 128         bin/data_stats \
 129         bin/gam42toconf \
 130         bin/se_of_eta \
 131         bin/update_inits \
 132         doc/SSE_userguide.pdf \
 133         doc/NPC_VPC_userguide.pdf \
 134         setup.pl \
 135         README.txt )
 136
 137 GENFILES=$(addprefix libgen/,$(LIBFILES))
 138
 139 all: libgen $(PERLFILES)
 140
 141 .PRECIOUS: $(GENFILES)
 142
 143 libgen:
 144         @ mkdir -p libgen
 145
 146 lib/%.pm: libgen/%.pm lib/%_subs.pm
 147          @ cp libgen/$*.pm libgen/$*_temp.pm
 148          @ $(FILLSCRIPT) libgen/$*_temp.pm lib/$*_subs.pm
 149          @ cp libgen/$*_temp.pm $@
 150          @ perl $(PERLDIRS) -I./$(@D) -I./lib -c $@ -W -t -T|| (rm $@ && false)
 151
 152 .PHONY : clean
 153
 154 clean:
 155         @-rm -rf $(PERLFILES) $(DOCUMENTS) libgen PsN-Source
 156
 157 libgen/debug.pm : diagrams/debug.dia
 158         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/debug.dia
 159
 160 libgen/ui.pm : diagrams/ui.dia
 161         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/ui.dia
 162
 163 libgen/status_bar.pm : diagrams/status_bar.dia
 164         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/status_bar.dia
 165
 166 libgen/nonmem.pm : diagrams/nonmem.dia
 167         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/nonmem.dia
 168
 169 libgen/moshog_client.pm : diagrams/moshog_client.dia
 170         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/moshog_client.dia
 171
 172 libgen/file.pm : diagrams/file.dia
 173         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/file.dia
 174
 175 libgen/tool/modelfit.pm : diagrams/modelfit.dia
 176         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/modelfit.dia
 177
 178 libgen/tool/llp.pm : diagrams/llp.dia
 179         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/llp.dia
 180
 181 libgen/tool/cdd/jackknife.pm libgen/tool/cdd.pm : diagrams/cdd.dia
 182         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/cdd.dia
 183
 184 libgen/tool/sse.pm : diagrams/sse.dia
 185         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/sse.dia
 186
 187 libgen/tool/npc.pm : diagrams/npc.dia
 188         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/npc.dia
 189
 190 libgen/tool/pind.pm : diagrams/pind.dia
 191         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/pind.dia
 192
 193 libgen/tool/nonpb.pm : diagrams/nonpb.dia
 194         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/nonpb.dia
 195
 196 libgen/tool/bootstrap.pm : diagrams/bootstrap.dia
 197         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/bootstrap.dia
 198
 199 libgen/tool/scm/config_file.pm libgen/tool/scm.pm : diagrams/scm.dia
 200         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/scm.dia
 201
 202 libgen/tool/xv_step.pm libgen/tool/xv.pm : diagrams/xv.dia
 203         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/xv.dia
 204
 205 libgen/tool.pm : diagrams/tool.dia
 206         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/tool.dia
 207
 208 libgen/table_file.pm libgen/extra_data.pm libgen/model%.pm : diagrams/model.dia
 209         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/model.dia
 210
 211 libgen/output%.pm : diagrams/output.dia
 212         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/output.dia
 213
 214 libgen/data%.pm : diagrams/data.dia
 215         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/data.dia
 216
 217 libgen/grid/nordugrid/xrsl_file.pm : diagrams/xrsl_file.dia
 218         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/xrsl_file.dia
 219
 220 libgen/fcon.pm : diagrams/fcon.dia
 221         $(DIA2CODE) -nd -t perl -d $(DIRPM) diagrams/fcon.dia
 222
 223 documents: $(DOCUMENTS)
 224
 225 $(addprefix html/bootstrap,$(HTML_STUBS)) : bin/bootstrap lib/common_options.pm
 226         perl $< --help --html
 227
 228 $(addprefix html/cdd,$(HTML_STUBS)) : bin/cdd lib/common_options.pm
 229         perl $< --help --html
 230
 231 $(addprefix html/execute,$(HTML_STUBS)) : bin/execute lib/common_options.pm
 232         perl $< --help --html
 233
 234 $(addprefix html/llp,$(HTML_STUBS)) : bin/llp lib/common_options.pm
 235         perl $< --help --html
 236
 237 $(addprefix html/scm,$(HTML_STUBS)) : bin/scm lib/common_options.pm
 238         perl $< --help --html
 239
 240
 241 release: libgen rel_dir $(RELFILES) documents
 242         @ cp -ar modules/Math-Random \
 243                  modules/Math-Random-Win \
 244                  modules/Storable PsN-Source/modules
 245         @ zip -r PsN-Source PsN-Source/
 246         @ tar czf PsN-Source.tar.gz PsN-Source/
 247
 248 PsN-Source/setup.pl: bin/setup.pl
 249         @ cp bin/setup.pl $@
 250
 251 PsN-Source/lib/matlab/% : matlab/%
 252         @ cp matlab/$* $@
 253
 254 PsN-Source/lib/R-scripts/% : R-scripts/%
 255         @ cp R-scripts/$* $@
 256
 257 PsN-Source/%: %
 258         @ cp -ar $* $@
 259
 260 rel_dir:
 261         @mkdir -p $(sort $(dir $(RELFILES))) PsN-Source/modules
 262