bin/setup.pl

   1 use strict;
   2 use Config;
   3 use CPAN;
   4 use File::Spec;
   5
   6 my $version = '2.2.6_rc2';
   7
   8 my $name_safe_version = $version;
   9 $name_safe_version =~ s/\./_/g;
  10 my @utilities = ('bootstrap', 'cdd', 'execute', 'llp', 'scm', 'sumo', 'sse', 'mc_cdd',
  11                 'data_stats', 'create_extra_data_model', 'single_valued_columns',
  12                 'gam42toconf', 'create_cont_model', 'create_cont_data', 'unwrap_data', 'create_subsets',
  13                 'check_termination','se_of_eta','update_inits','npc','vpc','pind','nonpb' );
  14
  15 my @win_modules = ('Math::Random');
  16 my @nix_modules = ('Math::Random','Storable');
  17
  18 my @modules;
  19
  20 sub confirm {
  21  my $input = <STDIN>;
  22  if( $input =~ /^\s*[yY]\s*$/ ){
  23    return 1;
  24  }
  25  return 0;
  26 }
  27
  28 sub get_input {
  29  my $default = shift;
  30  my $input = <STDIN>;
  31  chomp( $input );
  32  if( $input =~ /^\s*$/ ){
  33    return( $default );
  34  } else {
  35    return( $input );
  36  }
  37
  38 }
  39
  40 $| = 1; # Make sure autoflush is on
  41 $, = ',';
  42 print "\nThis is the PsN installer. I will install version $version of PsN Core,
  43 Toolkit and the following utilities: \n", @utilities, ".
  44 You will be presented with a few questions. Just pressing ENTER means
  45 that you accept the default values, except for YES and NO questions,
  46 in which you must be explicit.\n\n";
  47 $, ='';
  48
  49 if( $Config{osname} eq 'linux' ){
  50  my $user = `whoami`;
  51  chomp($user);
  52  unless( $user =~ /^root$/ ){
  53    print "Hi $user, you don't look like root. You need root privileges to install PsN systemwide. Would you like to try anyway [y/n] ?\n";
  54    exit unless( confirm() );
  55  }
  56 }
  57
  58 my $binary_dir;
  59 my $library_dir;
  60 my $perl_binary;
  61
  62 print "PsN Utilities installation directory [$Config{bin}]:";
  63
  64 $binary_dir = get_input( $Config{bin} );
  65
  66 unless( -e $binary_dir ){
  67  print "Directory $binary_dir does not exist! Would you like to create it?[y/n]\n";
  68  if( confirm() ){
  69    unless( mkdir( $binary_dir ) ){ print "Unable to create $binary_dir!!\n"; die };
  70  } else {
  71    exit;
  72  }
  73 }
  74
  75 print "Path to perl binary used to run Utilities [$Config{perlpath}]:";
  76
  77 $perl_binary = get_input( $Config{perlpath} );
  78
  79 print "PsN Core and Toolkit installation directory [$Config{sitelib}]:";
  80
  81 $library_dir = get_input( $Config{sitelib} );
  82
  83 unless( -e $library_dir ){
  84  print "Directory $library_dir does not exist! Would you like to create it? [y/n]\n";
  85  if( confirm() ){
  86    unless( mkdir( $library_dir ) ){ print "Unable to create $library_dir!!\n"; die };
  87  } else {
  88    exit;
  89  }
  90 }
  91
  92 my $overwrite = 0;
  93 my $old_version = 'X_X_X';
  94 my $keep_conf = 0;
  95
  96 unless( mkdir( "$library_dir/PsN_$name_safe_version" ) ){
  97  print "Failed to create $library_dir/PsN_$name_safe_version: $!\n";
  98  print "PsN is probably already installed. Would you like to continue anyway [y/n] ?";
  99  exit unless( confirm() );
 100 }
 101
 102 if( -e "$library_dir/PsN_$name_safe_version/psn.conf" ){
 103  print "An older version of psn.conf exists in $library_dir/PsN_$name_safe_version.\n";
 104  print "Keep the old version [y/n] ?";
 105  $keep_conf = confirm();
 106 }
 107
 108 my $copy_cmd;
 109 my $copy_recursive_cmd;
 110
 111 if( $Config{osname} eq 'MSWin32' ){
 112  $copy_cmd = "copy /Y";
 113  $copy_recursive_cmd = "xcopy /Y /E";
 114  @modules = @win_modules;
 115 } else {
 116  @modules = @nix_modules;
 117  $copy_cmd = "cp";
 118  $copy_recursive_cmd = "cp -r";
 119 }
 120
 121 system( $copy_cmd . " \"" . File::Spec -> catfile( $library_dir, "PsN_$name_safe_version", "psn.conf" ) . "\" old.conf" ) if $keep_conf;
 122 system( $copy_recursive_cmd . " " . File::Spec -> catfile( "lib", "*" ) . " \"" . File::Spec -> catdir( $library_dir, "PsN_$name_safe_version" ) . "\"" );
 123 system( $copy_cmd . " old.conf \"" . File::Spec -> catfile( $library_dir, "PsN_$name_safe_version", "psn.conf" ) . "\"" ) if $keep_conf;
 124
 125 my $confirmed = 0;
 126 foreach my $file ( @utilities ){
 127
 128  #system( $copy_cmd . " " . File::Spec -> catfile( "bin", $file ) . " " . File::Spec -> catfile( $binary_dir, "$file-$version" ) );
 129
 130  open( INST , "<" , File::Spec -> catfile( "bin", $file ) ) or die "Unable to install $file!\n";
 131  open( UTIL , ">" , File::Spec -> catfile( $binary_dir, "$file-$version" ) ) or die "Unable to install $file!\n";
 132  my $replace_line_found = 0;
 133  while( <INST> ){
 134    if( /\# Everything above this line will be replaced \#/ ){
 135      print UTIL "\#!" , $perl_binary , "\n";
 136      print UTIL "use lib '$library_dir';\n\n";
 137      print UTIL "\# Everything above this line was entered by the setup script \#\n";
 138      $replace_line_found = 1;
 139    } elsif( /use PsN/ ){
 140      print UTIL "use PsN_$name_safe_version;\n";
 141    } elsif( /require PsN/ ){
 142      print UTIL "require PsN_$name_safe_version;\n";
 143    } elsif( $replace_line_found ){
 144      print UTIL $_;
 145    }
 146  }
 147  close UTIL;
 148  close INST;
 149
 150  chmod( 0755, File::Spec -> catfile( $binary_dir, "$file-$version" ) );
 151
 152  if( -e "$binary_dir/$file" ){
 153
 154    if( $Config{osname} ne 'MSWin32' ){
 155      my $link = readlink( "$binary_dir/execute" );
 156      if( $old_version eq 'X_X_X' and not($link eq '') ) {
 157        $link =~ /-(\d+\.\d+\.\d+)/;
 158        $old_version = $1;
 159      }
 160    }
 161    next if( $old_version eq $version );
 162
 163    if( not $confirmed ){
 164
 165      print( "\nAn older version($old_version) of PsN is installed. Would you like to\n",
 166             "make this version ($version) the default?  Your old version will not be\n",
 167             "removed - it will be available as\n",
 168             "[bootstrap|cdd|execute|llp|scm|sumo]-$old_version [y/n]" );
 169
 170      $confirmed = 1;
 171      $overwrite = confirm();
 172    }
 173    if( $overwrite ){
 174      unlink( "$binary_dir/$file" );
 175      if( $Config{osname} eq 'MSWin32' ){
 176        system( "copy /Y \"$binary_dir\\$file-$version\" \"$binary_dir\\$file\"" );
 177        system( "copy /Y \"$Config{bin}\\runperl.bat\" \"$binary_dir\\$file.bat\"" );
 178      } else {
 179        symlink( "$binary_dir/$file-$version", "$binary_dir/$file" );
 180      }
 181    }
 182  } else {
 183
 184    if( $Config{osname} eq 'MSWin32' ){
 185      system( "copy /Y \"$binary_dir\\$file-$version\" \"$binary_dir\\$file\"" );
 186      system( "copy /Y \"$Config{bin}\\runperl.bat\" \"$binary_dir\\$file.bat\"" );
 187    } else {
 188      symlink( "$binary_dir/$file-$version", "$binary_dir/$file" );
 189    }
 190  }
 191 }
 192
 193 open( TEMPLATE, "lib/PsN_template.pm" ) or die "Unable to open PsN_template.pm in $library_dir: $!\n";
 194 open( PSN, '>', "$library_dir" . "/PsN_$name_safe_version.pm" ) or die "Unable to install PsN-$name_safe_version.pm in $library_dir: $!\n";
 195
 196 if( $Config{osname} eq 'MSWin32' ){
 197   require Win32;
 198   $library_dir = Win32::GetShortPathName($library_dir);
 199 }
 200
 201 print( PSN "package PsN;\n" );
 202 print( PSN "use lib '$library_dir/PsN_$name_safe_version';\n" );
 203 print( PSN "\$lib_dir = '$library_dir/PsN_$name_safe_version';\n" );
 204 print( PSN "\$config_file = '$library_dir/PsN_$name_safe_version/psn.conf';\n" );
 205 print( PSN "\$version = '$version';\n" );
 206
 207 for ( <TEMPLATE> ) {
 208  print PSN $_;
 209 }
 210 close( PSN );
 211 close( TEMPLATE );
 212
 213
 214 if( -e "$library_dir/PsN.pm" ){
 215  if( $overwrite ){
 216    unlink( "$library_dir/PsN.pm" );
 217    if( $Config{osname} eq 'MSWin32' ){
 218      system( "copy \"$library_dir\\PsN_$name_safe_version.pm\" \"$library_dir\\PsN.pm\"" );
 219    } else {
 220      symlink( "$library_dir/PsN_$name_safe_version.pm", "$library_dir/PsN.pm" );
 221    }
 222  }
 223 } else {
 224  if( $Config{osname} eq 'MSWin32' ){
 225    system("copy \"$library_dir\\PsN_$name_safe_version.pm\" \"$library_dir\\PsN.pm\"" );
 226  } else {
 227    symlink( "$library_dir/PsN_$name_safe_version.pm", "$library_dir/PsN.pm" );
 228  }
 229 }
 230
 231 open( PSN, '<', "$library_dir" . "/PsN_$name_safe_version/nonmem.pm" ) or die "Unable to install PsN-$name_safe_version/nonmem.pm in $library_dir: $!\n";
 232
 233 my @nonmem_pm = <PSN>;
 234
 235 close( PSN );
 236
 237 open( PSN, '>', "$library_dir" . "/PsN_$name_safe_version/nonmem.pm" ) or die "Unable to install PsN-$name_safe_version/nonmem.pm in $library_dir: $!\n";
 238
 239 for( @nonmem_pm ){
 240  if( /require PsN/ ){
 241    print PSN "require PsN_$name_safe_version;\n";
 242  } else {
 243    print PSN;
 244  }
 245 }
 246 close PsN;
 247 print "\nPsN has been successfully installed.
 248
 249 The next step is to install module dependencies. If you
 250 know that all dependencies are installed or you'd
 251 like to install them yourself, then you are finished now.
 252
 253 Would you like this script to install dependencies [y/n]?";
 254
 255 if(confirm()){
 256
 257 #  my $inst = ExtUtils::Installed->new();
 258 #  my @modules = $inst -> modules();
 259
 260 #  my %modules;
 261
 262 #  foreach my $module ( @modules ){
 263 #    $modules{$module} = 1;
 264 #  }
 265
 266  foreach my $module( @modules ){
 267
 268    my $mod_file = $module;
 269    $mod_file =~ s/::/-/g;
 270    print "\nInstalling $mod_file\n", "=" x 80, "\n";
 271    if( $Config{osname} eq 'MSWin32' ){
 272      if( -e "modules/$mod_file-Win" ){
 273        chdir( "modules/$mod_file-Win" );
 274        system( "ppm install $mod_file.ppd" );
 275        chdir( "../.." );
 276      } else {
 277        print( "$module might not be installed and you don't have a source distribution. Would you like to try installing using ppm over internet?[y/n]" );
 278        next unless( confirm() );
 279        system( "ppm install $mod_file" );
 280      }
 281    } elsif ( -e "modules/$mod_file" ){
 282      chdir( "modules/$mod_file" );
 283      system( "$Config{bin}/perl Makefile.PL" );
 284      system( "make install" );
 285      chdir( "../.." );
 286    } else {
 287      print( "$module might not be installed and you don't have a source distribution. Would you like to try installing from CPAN?[y/n]" );
 288      next unless( confirm() );
 289      CPAN::install( $module );
 290    }
 291    print "=" x80, "\n";
 292  }
 293 }
 294
 295 print "\nInstallation complete!\n";
 296 print "\nNow you should edit $library_dir/PsN_$name_safe_version/psn.conf so that PsN can find your NONMEM installations.\n\nPress the ENTER key to finish.";
 297
 298 confirm(); # Wait here so windows users see the message
 299
 300 # Uninstall ?
 301 # rm -rf /usr/lib/perl5/site_perl/5.8.4/PsN* /usr/bin/*-2.1.?.pl /usr/bin/execute.pl /usr/bin/llp.pl /usr/bin/cdd.pl /usr/bin/bootstrap.pl /usr/bin/scm.pl /usr/bin/sumo.pl