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[PsN.git] / html / download.php
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113 <div id="Layer1"
114 style="position: absolute; left: 335px; top: 42px; width: 388px; height: 43px; z-index: 1; font-size: x-small;">
115 <div class="style1" align="right">Download</div>
116 </div>
117 <div id="Layer2"
118 style="position: absolute; left: 226px; width: 497px; z-index: 2; top: 188px; height: 877px;">
119 <h3 class="heading1">Download</h3>
121 <p style="text-align: justify;">
123 PsN is distributed as a gziped tar ball and zipped file. Both should work
124 on Windows and UNIX (Including Linux an OS X).</p>
126 <table style="width: 100%;" border="0" cellpadding="4" cellspacing="4">
127 <tbody>
128 <!-- <tr>
129 <td>
130 <p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.1.10.tar.gz?download" target="_blank">PsN-2.1.10.tar.gz</a></p>
131 </td>
132 <td>
133 <p>This is the latest development release.</p>
134 </td>
135 <td>
136 <p>2005-10-14</p>
137 </td>
138 </tr>
139 <tr>
140 <td>
141 <p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.1.10.zip?download" target="_blank">PsN-2.1.10.zip</a></p>
142 </td>
143 <td>
144 <p>This is the latest development release.</p>
145 </td>
146 <td>
147 <p>2005-10-14</p>
148 </td>
149 </tr> -->
150 <tr>
151 <td colspan="3">
152 <p><b>Latest stable release</b></p> </td>
153 </tr>
155 <tr>
156 <td colspan="3">
157 <tr>
158 <td width="27%"><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.5.tar.gz?download" target="_blank">PsN-2.2.5.tar.gz</a></p></td>
159 <td width="55%">Please see the <a href="http://sourceforge.net/project/shownotes.php?group_id=101419&release_id=601480">change log</a> or the README.txt file for details. </td>
160 <td width="18%"><p>2008-05-26</p></td>
161 </tr>
162 <tr>
163 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.5.zip?download" target="_blank">PsN-2.2.5.zip</a></p></td>
164 <td><p>&nbsp;</p></td>
165 <td><p>2008-05-26</p></td>
166 </tr>
168 <tr>
169 <td colspan="3">
170 <p><b>Older releases</b></p></td>
171 </tr>
173 <tr>
174 <td colspan="3">
175 <tr>
176 <td width="27%"><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.4.tar.gz?download" target="_blank">PsN-2.2.4.tar.gz</a></p></td>
177 <td width="55%">Please see the <a href="http://sourceforge.net/project/shownotes.php?group_id=101419&release_id=537859">change log</a> or the README.txt file for details. </td>
178 <td width="18%"><p>2007-09-10</p></td>
179 </tr>
180 <tr>
181 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.4.zip?download" target="_blank">PsN-2.2.4.zip</a></p></td>
182 <td><p>&nbsp;</p></td>
183 <td><p>2007-09-10</p></td>
184 </tr>
186 <tr>
187 <td colspan="3">
188 <tr>
189 <td width="27%"><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.3.tar.gz?download" target="_blank">PsN-2.2.3.tar.gz</a></p></td>
190 <td width="55%">Please see the <a href="http://sourceforge.net/project/shownotes.php?group_id=101419&release_id=504936">change log</a> or the README.txt file for details. </td>
191 <td width="18%"><p>2007-04-30</p></td>
192 </tr>
193 <tr>
194 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.3.zip?download" target="_blank">PsN-2.2.3.zip</a></p></td>
195 <td><p>&nbsp;</p></td>
196 <td><p>2007-04-30</p></td>
197 </tr>
198 <tr>
199 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.2.tar.gz?download" target="_blank">PsN-2.2.2.tar.gz</a></p></td>
200 <td>Includes a rather large re-write of the jobs submission. Memory foot print should be much lower. See the README.txt for details.</td>
201 <td><p>2007-03-05</p></td>
202 </tr>
203 <tr>
204 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.2.zip?download" target="_blank">PsN-2.2.2.zip</a></p></td>
205 <td><p>&nbsp;</p></td>
206 <td><p>2007-03-05</p></td>
207 </tr>
208 <tr>
209 <td colspan="3">
210 <tr>
211 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.1.tar.gz?download" target="_blank">PsN-2.2.1.tar.gz</a></p></td>
212 <td><p>Version 2.2.1</p></td>
213 <td><p>2006-11-07</p></td>
214 </tr>
215 <tr>
216 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.1.zip?download" target="_blank">PsN-2.2.1.zip</a></p></td>
217 <td><p>&nbsp;</p></td>
218 <td><p>2006-11-07</p></td>
219 </tr>
220 <tr>
221 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.0.tar.gz?download" target="_blank">PsN-2.2.0.tar.gz</a></p></td>
222 <td><p>The new 2.2.0 release</p></td>
223 <td><p>2006-08-09</p></td>
224 </tr>
225 <tr>
226 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.0.zip?download" target="_blank">PsN-2.2.0.zip</a></p></td>
227 <td><p>&nbsp;</p></td>
228 <td><p>2006-08-09</p></td>
229 </tr>
232 <tr>
233 <td colspan="3" style="vertical-align: top;"><p>&nbsp;</p></td>
234 </tr>
235 <tr>
236 <td colspan="3">
237 <p><b>Beta releases</b></p></td>
238 </tr>
239 <tr>
240 <td colspan="3">
241 <tr>
242 <td colspan="3" style="vertical-align: top;"><p>We have begun to release beta tests of the stable releases. In these we will include all bug fixes and feature additions that we think are suitable to add quickly to the stable branch. </p></td>
243 </tr>
244 <tr>
245 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.2-beta4.tar.gz?download" target="_blank">PsN-2.2.2-beta4.tar.gz</a></p></td>
246 <td><p>4:th beta of the 2.2.2 release. Please use the stable release 2.2.3. It is newer than this beta release. </p></td>
247 <td><p>2007-01-29</p></td>
248 </tr>
249 <tr>
250 <td><p><a href="http://prdownloads.sourceforge.net/psn/PsN-2.2.2-beta4.zip?download" target="_blank">PsN-2.2.2-beta4.zip</a></p></td>
251 <td><p>&nbsp;</p></td>
252 <td><p>2007-01-29</p></td>
253 </tr>
254 <tr>
255 <td colspan="3" style="vertical-align: top;"><p>&nbsp;</p></td>
256 </tr>
257 <tr>
258 <td colspan="3" style="vertical-align: top;"><p><b>PsN Development release</b></p></td>
259 </tr>
260 <tr>
261 <td colspan="3" style="vertical-align: top;"><p>There is currently no development version available, but we are
262 planning to implement some interresting features and a release
263 of 2.3.0 might appear here then.</p></td>
264 </tr>
265 </tbody>
266 </table>
268 <p>&nbsp;</p>
269 <h3 class="heading1">Version numbers</h3>
271 <p style="text-align: justify;">
273 The PsN project follows the Linux style version numbering. The format
274 is X.Y.Z where X is major version. The Y is minor version and
275 increases when significant features are added or changed. The minor
276 version is even for stable release, and odd for development
277 releases. The Z is a revision number, it changes more often and
278 signifies smaller changes, mostly bug fixes.<br> </p>
280 <p style="text-align: justify;">
282 Older PsN versions is available from the <a target="_blank"
283 href="http://sourceforge.net/projects/psn/">SourceForge project
284 page</a>. (Look under the <a
285 href="http://sourceforge.net/project/showfiles.php?group_id=101419">files</a>
286 section). The project page also explains how to access the SourceForge
287 CVS, the repository where the latest changes to PsN are stored. However, if you
288 download PsN from the CVS the stability is not guaranteed - it might
289 be broken. </p>
291 <h3 class="heading1">Compatibility<br> </h3>
293 <p align="justify">PsN is tested on various platfiorms.
294 <table width="499" border="1">
295 <tr>
296 <th scope="col">&nbsp;</th>
297 <th scope="col">Operating system version </th>
298 <th scope="col">Perl</th>
299 <th scope="col">NONMEM</th>
300 <th scope="col">Fortran compiler </th>
301 </tr>
302 <tr>
303 <th scope="row">Microsoft Windows</th>
304 <td>XP</td>
305 <td><a target="_blank"
306 href="http://www.activestate.com/Products/ActivePerl/">ActiveState</a> ActivePerl 5.6.8.811 and 5.8.8.819 </td>
307 <td>5 and 6 </td>
308 <td><a
309 target="_blank" href="http://www.qtsoftware.de/dvf/">Digital Visual
310 Fortran</a> version 6.5 </td>
311 </tr>
312 <tr>
313 <th scope="row">&nbsp;</th>
314 <td>2000</td>
315 <td><a target="_blank"
316 href="http://www.activestate.com/Products/ActivePerl/">ActiveState</a> ActivePerl 5.6.8.811 and 5.8.8.819 </td>
317 <td>5 and 6</td>
318 <td><a
319 target="_blank" href="http://www.qtsoftware.de/dvf/">Digital Visual
320 Fortran</a> version 6.5</td>
321 </tr>
322 <tr>
323 <th scope="row">Macintosh</th>
324 <td>OS X 10.4.7 and above </td>
325 <td>5.8.6 and 5.8.8</td>
326 <td>5 and 6</td>
327 <td>Intel Fortran 9.1 </td>
328 </tr>
329 <tr>
330 <th scope="row">Linux</th>
331 <td>Red Hat 9, Gentoo </td>
332 <td>&nbsp;</td>
333 <td>5 and 6</td>
334 <td><a target="_blank"
335 href="http://www.gnu.org">GNU</a> g77 2.96 and 3.3 </td>
336 </tr>
337 <tr>
338 <th scope="row">&nbsp;</th>
339 <td>&nbsp;</td>
340 <td>&nbsp;</td>
341 <td>&nbsp;</td>
342 <td>&nbsp;</td>
343 </tr>
344 </table>
345 <p align="justify">
347 <p align="justify">
349 Our aim is to make PsN platform independent. Please try
350 PsN on other platforms and with other Perl versions and compilers and
351 report your success or failure.
352 <h3 class="heading1">Installation instructions<br> </h3>
354 <p>Installation is easy and consists of five simple
355 steps.</p>
357 <p style="font-weight: bold;">Installation using the provided setup
358 script</p> <ol>
359 <li>
360 <p>Unpack the file you downloaded. It will create a directory
361 called <tt>PsN-Source.</tt></p>
362 </li>
363 <li>
364 <div style="text-align: justify;">
366 <p align="justify">Run the installation script from within <tt>PsN-Source</tt>.
367 If you are running windows and have <a target="_blank"
368 href="http://www.activestate.com/Products/ActivePerl/">ActiveState
369 ActivePerl</a> installed you should be able to double-click on
370 <tt>setup.pl</tt>. Otherwise open a command line window (Windows Start-&gt;Run, type 'cmd'), go to
371 the <tt>PsN-Source </tt>directory and type: </p>
372 </div>
373 <p><tt>perl setup.pl</tt></p>
374 <p>Unix users should open their favorite terminal go to the <tt>PsN-Source</tt> directory and type: </p>
375 <p><tt>perl setup.pl</tt></p>
376 </li>
377 <li style="text-align: justify;">
379 <p>Answer the questions on screen. The default is probably the
380 best for most users. If you cannot install PsN where the install
381 script suggests and you wish to use PsN in your own perl
382 scripts, you must make sure that the directory where you
383 installed the PsN core and toolkit is in Perl's include
384 path. For convenience you should also check that the directory
385 where the utilities are installed is in your search path. </p>
386 </li>
387 <li>
389 <p style="text-align: justify;">Edit the configuration file <tt>psn.conf</tt> to make PsN aware your NONMEM
390 installation. If you accept the default options in the PsN setup script, this file is usually found in C:\Perl\site\lib\PsN_version_number\ (Windows) or /usr/local/lib/perl5/site_perl/perl_version/PsN_version/ or /usr/lib/perl5/site_perl/perl_version/PsN_version/ (Linux and Macintosh). </p> <p> For a more detailed documentation of the psn.conf <a href="psn_conf.php">look here.</a></p>
392 <p><span style="font-family: monospace;">[nm_versions]</span><br style="font-family: monospace;">
393 <span style="font-family: monospace;">default=/export/home/nmvi1.0,6 <br style="font-family: monospace;">
394 5=/export/home/nmv1.1,5
395 <br style="font-family: monospace;">
396 5_big=/export/home/nmv1.1_big,5</span><br>
397 <span style="font-family: monospace;">6=/export/home/nmvi1.0</span> <br style="font-family: monospace;">
398 <span style="font-family: monospace;"></span><br style="font-family: monospace;">
399 <span style="font-family: monospace;">[compiler]</span>
400 <br style="font-family: monospace;">
401 <span style="font-family: monospace;">; Gnu fortran compiler</span>
402 <br style="font-family: monospace;">
403 <span style="font-family: monospace;">name=g77</span>
404 <br style="font-family: monospace;">
405 <span style="font-family: monospace;">options=-W -static -O</span> </p>
406 </li>
407 <li><div style="text-align: justify;">
408 <p>The header <tt>[nm_versions]</tt> must always be present. Each
409 line under the <tt>nm_version</tt> header corresponds to a NONMEM version. To
410 the left of the equal sign is an identifier which is a number
411 or a text that names an installation of NONMEM. This is what you give to the PsN utilities using the option <tt>-nm_version</tt>.
412 Next comes the directory where the version of NONMEM is installed. Last is a version number. This is new from PsN version 2.2.2 and is needed for the computation of conditional weighted residuals. </p>
414 <p>The <tt>[compiler]</tt> section is optional but necessary if you have
415 another compiler than g77. The <tt>compiler</tt> section has two
416 lines. One starting with <tt>name</tt> on the left of the equal sign
417 which is the compiler executable name. You should include a path if you
418 don't have the compiler directory in you environment path. The second
419 line is the <tt>options</tt> line where you specify compiler options,
420 such as optimizations. (Note that
421 lines starting with ; are ignored.)</p>
422 </div>
423 </li>
424 <li>When the installation is
425 done you can safely remove the <tt>PsN-Source</tt>
426 directory if you like.</li>
427 </ol>
428 <br>
429 <p style="font-weight: bold;">Manual installation</p>
430 <p></p>
432 <p><b> As of version 2.2 we strongly encourage use of the installation
433 script, it is stable and should work fine for most people. Should it
434 fail for you, or have problems with installing an older PsN version, please contact us.</b> </p>
435 <!--
436 <ol>
437 <li>
438 <p>Unpack the file you downloaded. It will create a directory
439 called <tt>PsN-Source.</tt></p>
440 </li>
441 <li>
442 <p align="justify">Copy the <tt>PsN-Source\lib</tt> to a directory which is in the
443 Perl include path. Make sure you name the directory <tt>PsN</tt>. Then
444 copy the contents of <tt>PsN-Source\bin</tt> to a place that is in
445 your systems path.
447 On my Windows installation of Perl I place the <tt>PsN-Source\lib</tt>
448 directory in <tt>C:\perl\site\lib</tt>. And the contents of
449 <tt>PsN-Source\bin</tt> in <tt>C:\perl\bin</tt>.
451 <p align="justify"> To get the Windows command line to recognize that the programs you
452 just copied to <tt>C:\perl\bin</tt> you must create a batch file for
453 each program. The easiest way is to just copy the <tt>runperl.bat</tt>
454 that comes with ActiveState's Perl distribution. Make one copy for each
455 program with the same name as the program but with the <tt>.bat</tt>
456 extension.
457 <p align="justify">
458 For example, on a Gentoo Linux installation of Perl a good spot to place the
459 <tt>PsN-Source\lib</tt> directory is in
460 <tt>/usr/lib/perl5/site_perl/5.8.5</tt> and the
461 <tt>PsN-Source\bin</tt> contents in <tt>/usr/bin</tt>
463 </p>
464 </li>
465 <li>
466 <p align="justify">Next you must copy <span style="font-family:
467 monospace;">PsN.pm</span> from the <tt>PsN-Source\lib</tt> to the
468 directory just above the <tt>PsN</tt> you just created. Then you must
469 edit it to find the PsN directory. The file looks something like this.<p align="justify">
472 <span style="font-family: monospace;">package PsN;</span>
473 <br style="font-family: monospace;">
474 <span style="font-family: monospace;">use lib 'c:\perl\site\lib\PsN';</span>
475 <br style="font-family: monospace;">
476 <span style="font-family: monospace;">$config_file = "c:\perl\site\lib\PsN\psn.conf';</span>
477 <br style="font-family: monospace;">
478 <span style="font-family: monospace;">1;</span>
479 <p align="justify">
480 Now change the paths to where you installed PsN.<br>
481 </p>
482 </li>
483 <li>
484 <p align="justify">Edit the configuration, in the same way as in automatic
485 installation.</p>
486 </li>
487 <li>
488 <p align="justify">Install extra packages. At the time of writing, they are:</p>
489 </li>
490 <div align="justify">
492 <ul>
493 <li> <a target="_blank"
494 href="http://search.cpan.org/%7Egrommel/Math-Random-0.67/">Math::Random-0.67</a></li>
495 <li><a target="_blank"
496 href="http://search.cpan.org/%7Eams/Storable-2.13/">Storable::Store-0.67</a> (included with ActiveState Perl for Windows.)
497 </li>
498 </ul>
499 <p align="justify">All are available from <a target="_blank"
500 href="http://www.cpan.org/">CPAN.</a></p>
501 </li>
502 </div>
503 <div align="justify"><li>When the installation is done you can safely remove the <tt>PsN-Source</tt>
504 directory if you like.</div>
505 </li>
506 </ol>
508 <p>&nbsp;</p>
509 </div>
510 <table border="0" cellpadding="0" cellspacing="0" width="780">
511 <tbody>
512 <tr>
513 <td height="600" width="780">
514 <table border="0" cellpadding="0" cellspacing="0" width="780">
515 <tbody>
516 <tr>
517 <td colspan="7" height="201" width="780"><img
518 src="images/indexpane1_1_.jpg" name="" alt="" border="0" height="201"
519 width="780"></td>
520 </tr>
521 <tr>
522 <td height="46" width="26"><img
523 src="images/indexpane1_2_.jpg" name="" alt="" border="0" height="46"
524 width="26"></td>
525 <td height="46" width="73"><a href="index.php"
526 onmouseover="changeImages(/*CMP*/ 'object', /*URL*/ 'images/indexhomeov.jpg'); return true;"
527 onmouseout="changeImages(/*CMP*/ 'object', /*URL*/ 'images/indexhome.jpg'); return true;"><img
528 src="images/indexhome.jpg" name="object" alt="Home" border="0"
529 height="46" width="73"></a></td>
530 <td height="46" width="11"><img
531 src="images/indexpane3_2_.jpg" name="" alt="" border="0" height="46"
532 width="11"></td>
533 <td height="46" width="25"><img
534 src="images/indexpane4_2_.jpg" name="" alt="" border="0" height="46"
535 width="25"></td>
536 <td height="46" width="15"><img
537 src="images/indexpane5_2_.jpg" name="" alt="" border="0" height="46"
538 width="15"></td>
539 <td height="46" width="40"><img
540 src="images/indexpane6_2_.jpg" name="" alt="" border="0" height="46"
541 width="40"></td>
542 <td height="46" width="590"><img
543 src="images/indexpane7_2_.jpg" name="" alt="" border="0" height="46"
544 width="590"></td>
545 </tr>
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588 <tr>
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601 <tr>
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606 <tr>
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