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115 <div
class="style1" align
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</div
>
118 style
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119 <h3
class="heading1">Download
</h3
>
121 <p style
="text-align: justify;">
123 PsN is distributed
as a gziped tar ball
and zipped file
. Both should work
124 on Windows
and UNIX (Including Linux an OS X
).</p
>
126 <table style
="width: 100%;" border
="0" cellpadding
="4" cellspacing
="4">
130 <p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.1.10.tar.gz?download" target
="_blank">PsN
-2.1.10.tar
.gz
</a
></p
>
133 <p
>This is the latest development release
.</p
>
141 <p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.1.10.zip?download" target
="_blank">PsN
-2.1.10.zip
</a
></p
>
144 <p
>This is the latest development release
.</p
>
152 <p
><b
>Latest stable release
</b
></p
> </td
>
158 <td width
="27%"><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.5.tar.gz?download" target
="_blank">PsN
-2.2.5.tar
.gz
</a
></p
></td
>
159 <td width
="55%">Please see the
<a href
="http://sourceforge.net/project/shownotes.php?group_id=101419&release_id=601480">change log
</a
> or the README
.txt file
for details
. </td
>
160 <td width
="18%"><p
>2008-05-26</p
></td
>
163 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.5.zip?download" target
="_blank">PsN
-2.2.5.zip
</a
></p
></td
>
164 <td
><p
> 
;</p
></td
>
165 <td
><p
>2008-05-26</p
></td
>
170 <p
><b
>Older releases
</b
></p
></td
>
176 <td width
="27%"><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.4.tar.gz?download" target
="_blank">PsN
-2.2.4.tar
.gz
</a
></p
></td
>
177 <td width
="55%">Please see the
<a href
="http://sourceforge.net/project/shownotes.php?group_id=101419&release_id=537859">change log
</a
> or the README
.txt file
for details
. </td
>
178 <td width
="18%"><p
>2007-09-10</p
></td
>
181 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.4.zip?download" target
="_blank">PsN
-2.2.4.zip
</a
></p
></td
>
182 <td
><p
> 
;</p
></td
>
183 <td
><p
>2007-09-10</p
></td
>
189 <td width
="27%"><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.3.tar.gz?download" target
="_blank">PsN
-2.2.3.tar
.gz
</a
></p
></td
>
190 <td width
="55%">Please see the
<a href
="http://sourceforge.net/project/shownotes.php?group_id=101419&release_id=504936">change log
</a
> or the README
.txt file
for details
. </td
>
191 <td width
="18%"><p
>2007-04-30</p
></td
>
194 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.3.zip?download" target
="_blank">PsN
-2.2.3.zip
</a
></p
></td
>
195 <td
><p
> 
;</p
></td
>
196 <td
><p
>2007-04-30</p
></td
>
199 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.2.tar.gz?download" target
="_blank">PsN
-2.2.2.tar
.gz
</a
></p
></td
>
200 <td
>Includes a rather large re
-write of the jobs submission
. Memory foot
print should be much lower
. See the README
.txt
for details
.</td
>
201 <td
><p
>2007-03-05</p
></td
>
204 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.2.zip?download" target
="_blank">PsN
-2.2.2.zip
</a
></p
></td
>
205 <td
><p
> 
;</p
></td
>
206 <td
><p
>2007-03-05</p
></td
>
211 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.1.tar.gz?download" target
="_blank">PsN
-2.2.1.tar
.gz
</a
></p
></td
>
212 <td
><p
>Version
2.2.1</p
></td
>
213 <td
><p
>2006-11-07</p
></td
>
216 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.1.zip?download" target
="_blank">PsN
-2.2.1.zip
</a
></p
></td
>
217 <td
><p
> 
;</p
></td
>
218 <td
><p
>2006-11-07</p
></td
>
221 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.0.tar.gz?download" target
="_blank">PsN
-2.2.0.tar
.gz
</a
></p
></td
>
222 <td
><p
>The
new 2.2.0 release
</p
></td
>
223 <td
><p
>2006-08-09</p
></td
>
226 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.0.zip?download" target
="_blank">PsN
-2.2.0.zip
</a
></p
></td
>
227 <td
><p
> 
;</p
></td
>
228 <td
><p
>2006-08-09</p
></td
>
233 <td colspan
="3" style
="vertical-align: top;"><p
> 
;</p
></td
>
237 <p
><b
>Beta releases
</b
></p
></td
>
242 <td colspan
="3" style
="vertical-align: top;"><p
>We have begun to release beta tests of the stable releases
. In these we will
include all bug fixes
and feature additions that we think are suitable to add quickly to the stable branch
. </p
></td
>
245 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.2-beta4.tar.gz?download" target
="_blank">PsN
-2.2.2-beta4
.tar
.gz
</a
></p
></td
>
246 <td
><p
>4:th beta of the
2.2.2 release
. Please
use the stable release
2.2.3. It is newer than this beta release
. </p
></td
>
247 <td
><p
>2007-01-29</p
></td
>
250 <td
><p
><a href
="http://prdownloads.sourceforge.net/psn/PsN-2.2.2-beta4.zip?download" target
="_blank">PsN
-2.2.2-beta4
.zip
</a
></p
></td
>
251 <td
><p
> 
;</p
></td
>
252 <td
><p
>2007-01-29</p
></td
>
255 <td colspan
="3" style
="vertical-align: top;"><p
> 
;</p
></td
>
258 <td colspan
="3" style
="vertical-align: top;"><p
><b
>PsN Development release
</b
></p
></td
>
261 <td colspan
="3" style
="vertical-align: top;"><p
>There is currently no development version available
, but we are
262 planning to implement some interresting features
and a release
263 of
2.3.0 might appear here then
.</p
></td
>
269 <h3
class="heading1">Version numbers
</h3
>
271 <p style
="text-align: justify;">
273 The PsN project follows the Linux style version numbering
. The format
274 is X
.Y
.Z where X is major version
. The Y is minor version
and
275 increases when significant features are added
or changed
. The minor
276 version is even
for stable release
, and odd
for development
277 releases
. The Z is a revision number
, it changes more often
and
278 signifies smaller changes
, mostly bug fixes
.<br
> </p
>
280 <p style
="text-align: justify;">
282 Older PsN versions is available from the
<a target
="_blank"
283 href
="http://sourceforge.net/projects/psn/">SourceForge project
284 page
</a
>. (Look under the
<a
285 href
="http://sourceforge.net/project/showfiles.php?group_id=101419">files
</a
>
286 section
). The project page also explains how to access the SourceForge
287 CVS
, the repository where the latest changes to PsN are stored
. However
, if you
288 download PsN from the CVS the stability is not guaranteed
- it might
291 <h3
class="heading1">Compatibility
<br
> </h3
>
293 <p align
="justify">PsN is tested on various platfiorms
.
294 <table width
="499" border
="1">
296 <th scope
="col"> 
;</th
>
297 <th scope
="col">Operating system version
</th
>
298 <th scope
="col">Perl
</th
>
299 <th scope
="col">NONMEM
</th
>
300 <th scope
="col">Fortran compiler
</th
>
303 <th scope
="row">Microsoft Windows
</th
>
305 <td
><a target
="_blank"
306 href
="http://www.activestate.com/Products/ActivePerl/">ActiveState
</a
> ActivePerl
5.6.8.811 and 5.8.8.819 </td
>
309 target
="_blank" href
="http://www.qtsoftware.de/dvf/">Digital Visual
310 Fortran
</a
> version
6.5 </td
>
313 <th scope
="row"> 
;</th
>
315 <td
><a target
="_blank"
316 href
="http://www.activestate.com/Products/ActivePerl/">ActiveState
</a
> ActivePerl
5.6.8.811 and 5.8.8.819 </td
>
319 target
="_blank" href
="http://www.qtsoftware.de/dvf/">Digital Visual
320 Fortran
</a
> version
6.5</td
>
323 <th scope
="row">Macintosh
</th
>
324 <td
>OS X
10.4.7 and above
</td
>
325 <td
>5.8.6 and 5.8.8</td
>
327 <td
>Intel Fortran
9.1 </td
>
330 <th scope
="row">Linux
</th
>
331 <td
>Red Hat
9, Gentoo
</td
>
334 <td
><a target
="_blank"
335 href
="http://www.gnu.org">GNU
</a
> g77
2.96 and 3.3 </td
>
338 <th scope
="row"> 
;</th
>
349 Our aim is to make PsN platform independent
. Please
try
350 PsN on other platforms
and with other Perl versions
and compilers
and
351 report your success
or failure
.
352 <h3
class="heading1">Installation instructions
<br
> </h3
>
354 <p
>Installation is easy
and consists of five simple
357 <p style
="font-weight: bold;">Installation using the provided setup
360 <p
>Unpack the file you downloaded
. It will create a directory
361 called
<tt
>PsN
-Source
.</tt
></p
>
364 <div style
="text-align: justify;">
366 <p align
="justify">Run the installation script from within
<tt
>PsN
-Source
</tt
>.
367 If you are running windows
and have
<a target
="_blank"
368 href
="http://www.activestate.com/Products/ActivePerl/">ActiveState
369 ActivePerl
</a
> installed you should be able to
double-click on
370 <tt
>setup
.pl
</tt
>. Otherwise open a command line
window (Windows Start
->
;Run
, type
'cmd'), go to
371 the
<tt
>PsN
-Source
</tt
>directory
and type
: </p
>
373 <p
><tt
>perl setup
.pl
</tt
></p
>
374 <p
>Unix users should open their favorite terminal go to the
<tt
>PsN
-Source
</tt
> directory
and type
: </p
>
375 <p
><tt
>perl setup
.pl
</tt
></p
>
377 <li style
="text-align: justify;">
379 <p
>Answer the questions on screen
. The
default is probably the
380 best
for most users
. If you cannot install PsN where the install
381 script suggests
and you wish to
use PsN in your own perl
382 scripts
, you must make sure that the directory where you
383 installed the PsN core
and toolkit is in Perl
's include
384 path. For convenience you should also check that the directory
385 where the utilities are installed is in your search path. </p>
389 <p style="text-align: justify;">Edit the configuration file <tt>psn.conf</tt> to make PsN aware your NONMEM
390 installation. If you accept the default options in the PsN setup script, this file is usually found in C:\Perl\site\lib\PsN_version_number\ (Windows) or /usr/local/lib/perl5/site_perl/perl_version/PsN_version/ or /usr/lib/perl5/site_perl/perl_version/PsN_version/ (Linux and Macintosh). </p> <p> For a more detailed documentation of the psn.conf <a href="psn_conf.php">look here.</a></p>
392 <p><span style="font-family: monospace;">[nm_versions]</span><br style="font-family: monospace;">
393 <span style="font-family: monospace;">default=/export/home/nmvi1.0,6 <br style="font-family: monospace;">
394 5=/export/home/nmv1.1,5
395 <br style="font-family: monospace;">
396 5_big=/export/home/nmv1.1_big,5</span><br>
397 <span style="font-family: monospace;">6=/export/home/nmvi1.0</span> <br style="font-family: monospace;">
398 <span style="font-family: monospace;"></span><br style="font-family: monospace;">
399 <span style="font-family: monospace;">[compiler]</span>
400 <br style="font-family: monospace;">
401 <span style="font-family: monospace;">; Gnu fortran compiler</span>
402 <br style="font-family: monospace;">
403 <span style="font-family: monospace;">name=g77</span>
404 <br style="font-family: monospace;">
405 <span style="font-family: monospace;">options=-W -static -O</span> </p>
407 <li><div style="text-align: justify;">
408 <p>The header <tt>[nm_versions]</tt> must always be present. Each
409 line under the <tt>nm_version</tt> header corresponds to a NONMEM version. To
410 the left of the equal sign is an identifier which is a number
411 or a text that names an installation of NONMEM. This is what you give to the PsN utilities using the option <tt>-nm_version</tt>.
412 Next comes the directory where the version of NONMEM is installed. Last is a version number. This is new from PsN version 2.2.2 and is needed for the computation of conditional weighted residuals. </p>
414 <p>The <tt>[compiler]</tt> section is optional but necessary if you have
415 another compiler than g77. The <tt>compiler</tt> section has two
416 lines. One starting with <tt>name</tt> on the left of the equal sign
417 which is the compiler executable name. You should include a path if you
418 don't have the compiler directory in you environment path
. The second
419 line is the
<tt
>options
</tt
> line where you specify compiler options
,
420 such
as optimizations
. (Note that
421 lines starting with
; are ignored
.)</p
>
424 <li
>When the installation is
425 done you can safely remove the
<tt
>PsN
-Source
</tt
>
426 directory
if you like
.</li
>
429 <p style
="font-weight: bold;">Manual installation
</p
>
432 <p
><b
> As of version
2.2 we strongly encourage
use of the installation
433 script
, it is stable
and should work fine
for most people
. Should it
434 fail
for you
, or have problems with installing an older PsN version
, please contact us
.</b
> </p
>
438 <p
>Unpack the file you downloaded
. It will create a directory
439 called
<tt
>PsN
-Source
.</tt
></p
>
442 <p align
="justify">Copy the
<tt
>PsN
-Source\lib
</tt
> to a directory which is in the
443 Perl
include path
. Make sure you name the directory
<tt
>PsN
</tt
>. Then
444 copy the contents of
<tt
>PsN
-Source\bin
</tt
> to a place that is in
447 On my Windows installation of Perl I place the
<tt
>PsN
-Source\lib
</tt
>
448 directory in
<tt
>C
:\perl\site\lib
</tt
>. And the contents of
449 <tt
>PsN
-Source\bin
</tt
> in
<tt
>C
:\perl\bin
</tt
>.
451 <p align
="justify"> To get the Windows command line to recognize that the programs you
452 just copied to
<tt
>C
:\perl\bin
</tt
> you must create a batch file
for
453 each program
. The easiest way is to just copy the
<tt
>runperl
.bat
</tt
>
454 that comes with ActiveState
's Perl distribution. Make one copy for each
455 program with the same name as the program but with the <tt>.bat</tt>
458 For example, on a Gentoo Linux installation of Perl a good spot to place the
459 <tt>PsN-Source\lib</tt> directory is in
460 <tt>/usr/lib/perl5/site_perl/5.8.5</tt> and the
461 <tt>PsN-Source\bin</tt> contents in <tt>/usr/bin</tt>
466 <p align="justify">Next you must copy <span style="font-family:
467 monospace;">PsN.pm</span> from the <tt>PsN-Source\lib</tt> to the
468 directory just above the <tt>PsN</tt> you just created. Then you must
469 edit it to find the PsN directory. The file looks something like this.<p align="justify">
472 <span style="font-family: monospace;">package PsN;</span>
473 <br style="font-family: monospace;">
474 <span style="font-family: monospace;">use lib 'c
:\perl\site\lib\PsN
';</span>
475 <br style="font-family: monospace;">
476 <span style="font-family: monospace;">$config_file = "c:\perl\site\lib\PsN\psn.conf';</span
>
477 <br style
="font-family: monospace;">
478 <span style
="font-family: monospace;">1;</span
>
480 Now change the paths to where you installed PsN
.<br
>
484 <p align
="justify">Edit the configuration
, in the same way
as in automatic
488 <p align
="justify">Install extra packages
. At the time of writing
, they are
:</p
>
490 <div align
="justify">
493 <li
> <a target
="_blank"
494 href
="http://search.cpan.org/%7Egrommel/Math-Random-0.67/">Math
::Random
-0.67</a
></li
>
495 <li
><a target
="_blank"
496 href
="http://search.cpan.org/%7Eams/Storable-2.13/">Storable
::Store
-0.67</a
> (included with ActiveState Perl
for Windows
.)
499 <p align
="justify">All are available from
<a target
="_blank"
500 href
="http://www.cpan.org/">CPAN
.</a
></p
>
503 <div align
="justify"><li
>When the installation is done you can safely remove the
<tt
>PsN
-Source
</tt
>
504 directory
if you like
.</div
>
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="46" width
="73"></a
></td
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530 <td height
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="images/indexpane3_2_.jpg" name
="" alt
="" border
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533 <td height
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534 src
="images/indexpane4_2_.jpg" name
="" alt
="" border
="0" height
="46"
536 <td height
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537 src
="images/indexpane5_2_.jpg" name
="" alt
="" border
="0" height
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539 <td height
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="40"><img
540 src
="images/indexpane6_2_.jpg" name
="" alt
="" border
="0" height
="46"
542 <td height
="46" width
="590"><img
543 src
="images/indexpane7_2_.jpg" name
="" alt
="" border
="0" height
="46"
547 <td colspan
="7" height
="7" width
="780"><img
548 src
="images/indexpane1_3_.jpg" name
="" alt
="" border
="0" height
="7"
552 <td height
="46" width
="26"><img
553 src
="images/indexpane1_4_.jpg" name
="" alt
="" border
="0" height
="46"
555 <td colspan
="5" height
="46" width
="164"><a href
="docs.php"
556 onmouseover
="changeImages(/*CMP*/ 'object1', /*URL*/ 'images/indexdocumentationov.jpg'); return true;"
557 onmouseout
="changeImages(/*CMP*/ 'object1', /*URL*/ 'images/indexdocumentation.jpg'); return true;"><img
558 src
="images/indexdocumentation.jpg" name
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="Documentation"
559 border
="0" height
="46" width
="164"></a
></td
>
560 <td height
="46" width
="590"><img
561 src
="images/indexpane7_4_.jpg" name
="" alt
="" border
="0" height
="46"
565 <td colspan
="7" height
="7" width
="780"><img
566 src
="images/indexpane1_5_.jpg" name
="" alt
="" border
="0" height
="7"
570 <td height
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="26"><img
571 src
="images/indexpane1_6_.jpg" name
="" alt
="" border
="0" height
="46"
573 <td colspan
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="46" width
="109"><a
575 onmouseover
="changeImages(/*CMP*/ 'object2', /*URL*/ 'images/indexdownloadov.jpg'); return true;"
576 onmouseout
="changeImages(/*CMP*/ 'object2', /*URL*/ 'images/indexdownload.jpg'); return true;"><img
577 src
="images/indexdownload.jpg" name
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="Download" border
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578 height
="46" width
="109"></a
></td
>
579 <td colspan
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="46" width
="645"><img
580 src
="images/indexpane5_6_.jpg" name
="" alt
="" border
="0" height
="46"
584 <td colspan
="7" height
="7" width
="780"><img
585 src
="images/indexpane1_7_.jpg" name
="" alt
="" border
="0" height
="7"
589 <td height
="46" width
="26"><img
590 src
="images/indexpane1_8_.jpg" name
="" alt
="" border
="0" height
="46"
592 <td colspan
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="46" width
="84"><a href
="buglist.php"
593 onmouseover
="changeImages(/*CMP*/ 'object3', /*URL*/ 'images/indexbuglistov.jpg'); return true;"
594 onmouseout
="changeImages(/*CMP*/ 'object3', /*URL*/ 'images/indexbuglist.jpg'); return true;"><img
595 src
="images/indexbuglist.jpg" name
="object3" alt
="Buglist" border
="0"
596 height
="46" width
="84"></a
></td
>
597 <td colspan
="4" height
="46" width
="670"><img
598 src
="images/indexpane4_8_.jpg" name
="" alt
="" border
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="46"
602 <td colspan
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="7" width
="780"><img
603 src
="images/indexpane1_9_.jpg" name
="" alt
="" border
="0" height
="7"
607 <td height
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608 src
="images/indexpane1_10_.jpg" name
="" alt
="" border
="0" height
="46"
610 <td colspan
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="46" width
="124"><a href
="list.php"
611 onmouseover
="changeImages(/*CMP*/ 'object4', /*URL*/ 'images/indexmailing_listov.jpg'); return true;"
612 onmouseout
="changeImages(/*CMP*/ 'object4', /*URL*/ 'images/indexmailing_list.jpg'); return true;"><img
613 src
="images/indexmailing_list.jpg" name
="object4" alt
="Mailing List"
614 border
="0" height
="46" width
="124"></a
></td
>
615 <td colspan
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="46" width
="630"><img
616 src
="images/indexpane6_10_.jpg" name
="" alt
="" border
="0" height
="46"
620 <td colspan
="7" height
="141" width
="780"><img
621 src
="images/indexpane1_11_.jpg" name
="" alt
="" border
="0" height
="141"
629 <td
><img src
="images/is_single_pixel_gif.gif" alt
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