Makefile

   1 DIAGRAMS=diagrams/llp.dia diagrams/tool.dia diagrams/model.dia diagrams/output.dia diagrams/data.dia diagrams/xrsl_file.dia diagrams/fcon.dia diagrams/nonmem.dia diagrams/moshog_client.dia
   2 DOCUMENTS=html/bootstrap_synopsis.php html/bootstrap_description.php html/bootstrap_options.php html/bootstrap_examples.php \
   3         html/cdd_synopsis.php html/cdd_description.php html/cdd_options.php html/cdd_examples.php \
   4         html/execute_synopsis.php html/execute_description.php html/execute_options.php html/execute_examples.php \
   5         html/llp_synopsis.php html/llp_description.php html/llp_options.php html/llp_examples.php \
   6         html/scm_synopsis.php html/scm_description.php html/scm_options.php html/scm_examples.php
   7 DIA2CODE=dia2code
   8 FILLSCRIPT=perl ./bin/fill_diacode.pl
   9 DIRPM=libgen/
  10 DIRSUBS=lib/
  11 PERLDIRS=-I/home/pontus/perl
  12 PERLFILES=lib/debug.pm \
  13         lib/ui.pm \
  14         lib/status_bar.pm \
  15         lib/nonmem.pm \
  16         lib/moshog_client.pm \
  17         lib/file.pm \
  18         lib/data/individual.pm \
  19         lib/data.pm \
  20         lib/output/problem/subproblem.pm \
  21         lib/output/problem.pm \
  22         lib/output.pm \
  23         lib/grid/nordugrid/xrsl_file.pm \
  24         lib/fcon.pm \
  25         lib/table_file.pm \
  26         lib/extra_data.pm \
  27         lib/model/problem/record/option.pm \
  28         lib/model/problem/record/init_option.pm \
  29         lib/model/problem/record/theta_option.pm \
  30         lib/model/problem/record.pm \
  31         lib/model/problem/code_record.pm \
  32         lib/model/problem/init_record.pm \
  33         lib/model/problem/abbreviated.pm \
  34         lib/model/problem/aes.pm \
  35         lib/model/problem/aesinit.pm \
  36         lib/model/problem/contr.pm \
  37         lib/model/problem/covariance.pm \
  38         lib/model/problem/data.pm \
  39         lib/model/problem/des.pm \
  40         lib/model/problem/error.pm \
  41         lib/model/problem/estimation.pm \
  42         lib/model/problem/infn.pm \
  43         lib/model/problem/input.pm \
  44         lib/model/problem/msfi.pm \
  45         lib/model/problem/mix.pm \
  46         lib/model/problem/model.pm \
  47         lib/model/problem/nonparametric.pm \
  48         lib/model/problem/omega.pm \
  49         lib/model/problem/pk.pm \
  50         lib/model/problem/problem.pm \
  51         lib/model/problem/pred.pm \
  52         lib/model/problem/scatter.pm \
  53         lib/model/problem/sigma.pm \
  54         lib/model/problem/simulation.pm \
  55         lib/model/problem/subroutine.pm \
  56         lib/model/problem/table.pm \
  57         lib/model/problem/theta.pm \
  58         lib/model/problem/tol.pm \
  59         lib/model/problem.pm \
  60         lib/model/shrinkage_module.pm \
  61         lib/model/nonparametric_module.pm \
  62         lib/model.pm \
  63         lib/tool.pm \
  64         lib/tool/modelfit.pm \
  65         lib/tool/llp.pm \
  66         lib/tool/cdd.pm \
  67         lib/tool/cdd/jackknife.pm \
  68         lib/tool/mc.pm \
  69         lib/tool/bootstrap.pm \
  70         lib/tool/scm/config_file.pm \
  71         lib/tool/scm.pm \
  72         lib/tool/xv_step.pm \
  73         lib/tool/xv.pm \
  74
  75 RELFILES=PsN-Source/lib/PsN_template.pm \
  76         PsN-Source/lib/debug.pm \
  77         PsN-Source/lib/ui.pm \
  78         PsN-Source/lib/status_bar.pm \
  79         PsN-Source/lib/nonmem.pm \
  80         PsN-Source/lib/moshog_client.pm \
  81         PsN-Source/lib/file.pm \
  82         PsN-Source/lib/data/individual.pm \
  83         PsN-Source/lib/data.pm \
  84         PsN-Source/lib/output/problem/subproblem.pm \
  85         PsN-Source/lib/output/problem.pm \
  86         PsN-Source/lib/output.pm \
  87         PsN-Source/lib/grid/nordugrid/xrsl_file.pm \
  88         PsN-Source/lib/fcon.pm \
  89         PsN-Source/lib/table_file.pm \
  90         PsN-Source/lib/extra_data.pm \
  91         PsN-Source/lib/model/problem/record/option.pm \
  92         PsN-Source/lib/model/problem/record/init_option.pm \
  93         PsN-Source/lib/model/problem/record/theta_option.pm \
  94         PsN-Source/lib/model/problem/record.pm \
  95         PsN-Source/lib/model/problem/code_record.pm \
  96         PsN-Source/lib/model/problem/init_record.pm \
  97         PsN-Source/lib/model/problem/abbreviated.pm \
  98         PsN-Source/lib/model/problem/aes.pm \
  99         PsN-Source/lib/model/problem/aesinit.pm \
 100         PsN-Source/lib/model/problem/contr.pm \
 101         PsN-Source/lib/model/problem/covariance.pm \
 102         PsN-Source/lib/model/problem/data.pm \
 103         PsN-Source/lib/model/problem/des.pm \
 104         PsN-Source/lib/model/problem/error.pm \
 105         PsN-Source/lib/model/problem/estimation.pm \
 106         PsN-Source/lib/model/problem/infn.pm \
 107         PsN-Source/lib/model/problem/input.pm \
 108         PsN-Source/lib/model/problem/msfi.pm \
 109         PsN-Source/lib/model/problem/mix.pm \
 110         PsN-Source/lib/model/problem/model.pm \
 111         PsN-Source/lib/model/problem/nonparametric.pm \
 112         PsN-Source/lib/model/problem/omega.pm \
 113         PsN-Source/lib/model/problem/pk.pm \
 114         PsN-Source/lib/model/problem/problem.pm \
 115         PsN-Source/lib/model/problem/pred.pm \
 116         PsN-Source/lib/model/problem/scatter.pm \
 117         PsN-Source/lib/model/problem/sigma.pm \
 118         PsN-Source/lib/model/problem/simulation.pm \
 119         PsN-Source/lib/model/problem/subroutine.pm \
 120         PsN-Source/lib/model/problem/table.pm \
 121         PsN-Source/lib/model/problem/theta.pm \
 122         PsN-Source/lib/model/problem/tol.pm \
 123         PsN-Source/lib/model/problem.pm \
 124         PsN-Source/lib/model/shrinkage_module.pm \
 125         PsN-Source/lib/model/nonparametric_module.pm \
 126         PsN-Source/lib/model.pm \
 127         PsN-Source/lib/tool.pm \
 128         PsN-Source/lib/tool/modelfit.pm \
 129         PsN-Source/lib/tool/llp.pm \
 130         PsN-Source/lib/tool/cdd.pm \
 131         PsN-Source/lib/tool/cdd/jackknife.pm \
 132         PsN-Source/lib/tool/mc.pm \
 133         PsN-Source/lib/tool/bootstrap.pm \
 134         PsN-Source/lib/tool/scm/config_file.pm \
 135         PsN-Source/lib/tool/scm.pm \
 136         PsN-Source/lib/tool/xv_step.pm \
 137         PsN-Source/lib/tool/xv.pm \
 138         PsN-Source/lib/common_options.pm \
 139         PsN-Source/lib/psn.conf \
 140         PsN-Source/setup.pl \
 141         PsN-Source/bin/execute \
 142         PsN-Source/bin/cdd \
 143         PsN-Source/bin/mc_cdd \
 144         PsN-Source/bin/mcs \
 145         PsN-Source/bin/llp \
 146         PsN-Source/bin/scm \
 147         PsN-Source/bin/bootstrap \
 148         PsN-Source/bin/sumo \
 149         PsN-Source/bin/single_valued_columns \
 150         PsN-Source/bin/check_termination \
 151         PsN-Source/bin/create_extra_data_model \
 152         PsN-Source/bin/create_cont_model \
 153         PsN-Source/bin/create_cont_data \
 154         PsN-Source/bin/create_subsets \
 155         PsN-Source/bin/unwrap_data \
 156         PsN-Source/bin/data_stats \
 157         PsN-Source/bin/gam42toconf \
 158         PsN-Source/lib/OSspecific.pm \
 159         PsN-Source/lib/hotkey.pm \
 160         PsN-Source/README.txt \
 161         PsN-Source/lib/ext/Math/SigFigs.pm \
 162         PsN-Source/lib/ext/Math/MatrixReal.pm \
 163         PsN-Source/lib/ext/Statistics/Distributions.pm \
 164         PsN-Source/lib/ext/Parallel/ForkManager.pm \
 165         PsN-Source/lib/ext/Config/Tiny.pm \
 166         PsN-Source/lib/ext/Color/Output.pm \
 167         PsN-Source/lib/ext/File/HomeDir.pm \
 168         PsN-Source/lib/ext/IPC/Run3.pm \
 169         PsN-Source/lib/matlab/bca.m \
 170         PsN-Source/lib/matlab/histograms.m \
 171         PsN-Source/lib/matlab/profiles.m \
 172         PsN-Source/lib/R-scripts/llp.R \
 173         PsN-Source/lib/R-scripts/cdd.R \
 174         PsN-Source/lib/R-scripts/bootstrap.R
 175
 176 RELDIRS=PsN-Source \
 177         PsN-Source/bin \
 178         PsN-Source/lib \
 179         PsN-Source/lib/data \
 180         PsN-Source/lib/output/problem/ \
 181         PsN-Source/lib/model/problem/record \
 182         PsN-Source/lib/tool/scm \
 183         PsN-Source/lib/tool/cdd \
 184         PsN-Source/lib/grid/nordugrid \
 185         PsN-Source/modules \
 186         PsN-Source/lib/ext \
 187         PsN-Source/lib/ext/Math \
 188         PsN-Source/lib/ext/Statistics \
 189         PsN-Source/lib/ext/Parallel \
 190         PsN-Source/lib/ext/IPC \
 191         PsN-Source/lib/ext/Config \
 192         PsN-Source/lib/ext/File \
 193         PsN-Source/lib/ext/Color \
 194         PsN-Source/lib/matlab \
 195         PsN-Source/lib/R-scripts
 196
 197 GENFILES=libgen/debug.pm \
 198         libgen/ui.pm \
 199         libgen/status_bar.pm \
 200         libgen/nonmem.pm \
 201         libgen/moshog_client.pm \
 202         libgen/file.pm \
 203         libgen/tool.pm \
 204         libgen/tool/modelfit.pm \
 205         libgen/tool/llp.pm \
 206         libgen/tool/cdd.pm \
 207         libgen/tool/cdd/jackknife.pm \
 208         libgen/tool/mc.pm \
 209         libgen/tool/bootstrap.pm \
 210         libgen/tool/scm/config_file.pm \
 211         libgen/tool/scm.pm \
 212         libgen/tool/xv_step.pm \
 213         libgen/tool/xv.pm \
 214         libgen/model/problem/record/option.pm \
 215         libgen/model/problem/record/init_option.pm \
 216         libgen/model/problem/record/theta_option.pm \
 217         libgen/model/problem/record.pm \
 218         libgen/model/problem/code_record.pm \
 219         libgen/model/problem/init_record.pm \
 220         libgen/model/problem/abbreviated.pm \
 221         libgen/model/problem/aes.pm \
 222         libgen/model/problem/aesinit.pm \
 223         libgen/model/problem/contr.pm \
 224         libgen/model/problem/covariance.pm \
 225         libgen/model/problem/data.pm \
 226         libgen/model/problem/des.pm \
 227         libgen/model/problem/error.pm \
 228         libgen/model/problem/estimation.pm \
 229         libgen/model/problem/infn.pm \
 230         libgen/model/problem/input.pm \
 231         libgen/model/problem/msfi.pm \
 232         libgen/model/problem/mix.pm \
 233         libgen/model/problem/model.pm \
 234         libgen/model/problem/nonparametric.pm \
 235         libgen/model/problem/omega.pm \
 236         libgen/model/problem/pk.pm \
 237         libgen/model/problem/problem.pm \
 238         libgen/model/problem/pred.pm \
 239         libgen/model/problem/scatter.pm \
 240         libgen/model/problem/sigma.pm \
 241         libgen/model/problem/simulation.pm \
 242         libgen/model/problem/subroutine.pm \
 243         libgen/model/problem/table.pm \
 244         libgen/model/problem/theta.pm \
 245         libgen/model/problem/tol.pm \
 246         libgen/model/problem.pm \
 247         libgen/model/shrinkage_module.pm \
 248         libgen/model/nonparametric_module.pm \
 249         libgen/model.pm \
 250         libgen/data/individual.pm \
 251         libgen/data.pm \
 252         libgen/output/problem/subproblem.pm \
 253         libgen/output/problem.pm \
 254         libgen/output.pm \
 255         libgen/table_file.pm \
 256         libgen/extra_data.pm \
 257         libgen/grid/nordugrid/xrsl_file.pm \
 258         libgen/fcon.pm \
 259
 260 all: libgen $(PERLFILES)
 261
 262 .SECONDARY: $(GENFILES)
 263
 264 libgen:
 265         @ mkdir -p libgen
 266
 267 lib/%.pm: libgen/%.pm lib/%_subs.pm
 268         @ cp libgen/$*.pm libgen/$*_temp.pm
 269         @ $(FILLSCRIPT) libgen/$*_temp.pm lib/$*_subs.pm
 270         @ cp libgen/$*_temp.pm $@
 271         @ perl $(PERLDIRS) -I./$(@D) -I./lib -c $@ -W -t -T|| (rm $@ && false)
 272
 273 .PHONY : clean
 274 clean:
 275         @-rm -rf $(PERLFILES) $(GENFILES) $(DOCUMENTS) libgen PsN-Source
 276
 277 libgen/debug.pm : diagrams/debug.dia
 278         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/debug.dia
 279
 280 libgen/ui.pm : diagrams/ui.dia
 281         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/ui.dia
 282
 283 libgen/status_bar.pm : diagrams/status_bar.dia
 284         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/status_bar.dia
 285
 286 libgen/nonmem.pm : diagrams/nonmem.dia
 287         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/nonmem.dia
 288
 289 libgen/moshog_client.pm : diagrams/moshog_client.dia
 290         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/moshog_client.dia
 291
 292 libgen/file.pm : diagrams/file.dia
 293         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/file.dia
 294
 295 libgen/tool/modelfit.pm : diagrams/modelfit.dia
 296         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/modelfit.dia
 297
 298 libgen/tool/llp.pm : diagrams/llp.dia
 299         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/llp.dia
 300
 301 libgen/tool/cdd/jackknife.pm libgen/tool/cdd.pm : diagrams/cdd.dia
 302         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/cdd.dia
 303
 304 libgen/tool/mc.pm : diagrams/mc.dia
 305         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/mc.dia
 306
 307 libgen/tool/bootstrap.pm : diagrams/bootstrap.dia
 308         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/bootstrap.dia
 309
 310 libgen/tool/scm/config_file.pm libgen/tool/scm.pm : diagrams/scm.dia
 311         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/scm.dia
 312
 313 libgen/tool/xv_step.pm libgen/tool/xv.pm : diagrams/xv.dia
 314         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/xv.dia
 315
 316 libgen/tool.pm : diagrams/tool.dia
 317         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/tool.dia
 318
 319 libgen/table_file.pm libgen/extra_data.pm libgen/model%.pm : diagrams/model.dia
 320         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/model.dia
 321
 322 libgen/output%.pm : diagrams/output.dia
 323         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/output.dia
 324
 325 libgen/data%.pm : diagrams/data.dia
 326         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/data.dia
 327
 328 libgen/grid/nordugrid/xrsl_file.pm : diagrams/xrsl_file.dia
 329         $(DIA2CODE) -t perl -d $(DIRPM) diagrams/xrsl_file.dia
 330
 331 libgen/fcon.pm : diagrams/fcon.dia
 332         $(DIA2CODE) -nd -t perl -d $(DIRPM) diagrams/fcon.dia
 333
 334 documents: $(DOCUMENTS)
 335
 336 html/bootstrap_synopsis.php html/bootstrap_description.php html/bootstrap_options.php html/bootstrap_examples.php : bin/bootstrap lib/common_options.pm
 337         $^ --help --html
 338
 339 html/cdd_synopsis.php html/cdd_description.php html/cdd_options.php html/cdd_examples.php : bin/cdd lib/common_options.pm
 340         $^ --help --html
 341
 342 html/execute_synopsis.php html/execute_description.php html/execute_options.php html/execute_examples.php : bin/execute lib/common_options.pm
 343         $^ --help --html
 344
 345 html/llp_synopsis.php html/llp_description.php html/llp_options.php html/llp_examples.php : bin/llp lib/common_options.pm
 346         $^ --help --html
 347
 348 html/scm_synopsis.php html/scm_description.php html/scm_options.php html/scm_examples.php : bin/scm lib/common_options.pm
 349         $^ --help --html
 350
 351
 352 release: $(RELDIRS) $(RELFILES) documents
 353         @ cp -ar modules/Math-Random \
 354                  modules/Math-Random-Win \
 355                  modules/Storable PsN-Source/modules
 356         @ zip -r PsN-Source PsN-Source/
 357         @ tar czf PsN-Source.tar.gz PsN-Source/
 358
 359 PsN-Source/setup.pl: bin/setup.pl
 360         @ cp bin/setup.pl $@
 361
 362 PsN-Source/lib/matlab/% : matlab/%
 363         @ cp matlab/$* $@
 364
 365 PsN-Source/lib/R-scripts/% : matlab/%
 366         @ cp R-scripts/$* $@
 367
 368 PsN-Source/%: %
 369         @ cp -ar $* $@
 370
 371 $(RELDIRS):
 372         @ mkdir -p $@