html/sumo_docs.php

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 114 <div id="Layer1"
 115  style="position: absolute; left: 335px; top: 42px; width: 388px; height: 43px; z-index: 1; font-size: x-small;">
 116 <div class="style1" align="right"><span style="font-family: monospace;">sumo</span><br>
 117 </div>
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 122
 123 <h3 class="heading1">Synopsis</h3>
 124 <span class="style2">sumo.pl [ -h | -? ] [ -help ]<br>
 125           [ -debug='integer' ]<br>
 126           [ -debug_package='string' ]<br>
 127           [ -debug_subroutine='string' ]<br>
 128           outputfile(s)</span
 129
 130 <h3 class="heading1">Description</h3>
 131
 132 Sumo is short for SUmmarize Output. And it does exactly that. It
 133 gathers some usefull information from NONMEM ouputfiles and prints a
 134 summary to screen.
 135
 136 <h3 class="heading1">Options</h3>
 137 <p>
 138     The following options are valid:
 139 <p class="style2">
 140     -h | -?
 141 <p>
 142     Print a list of options.
 143 <p>
 144  <p class="style2">
 145     -help
 146 <p>
 147     Print this, longer, help message.
 148 <p>
 149 <p class="style2">
 150         -debug='integer'
 151 <p>
 152     Default value is: 0
 153 <p>
 154     This is mainly for developers who whish to debug PsN. By default
 155     'integer' is zero but you can try setting it to '1' and you might
 156     get some helpfull warnings. If you run in to problems that require
 157     support, you might be told to crank this number up and send the
 158     output to us.
 159 <p>
 160 <p class="style2">
 161     -debug_package='string'
 162 <p>
 163     Default value is: empty string
 164 <p>
 165     If use together with '-debug' it is possible to choose which part
 166     of PsN you want to see debug messages from. Again this is mostly
 167     for developers.
 168 <p>
 169 <p class="style2">
 170     -debug_subroutine='string'
 171 <p>
 172     Default value is: empty string
 173 <p>
 174     With this option it is possible to specify, with even finer
 175     granularity, which part of PsN you want to see debug messages
 176     from. This is definitly only for developers.
 177 <h3 class="heading1">Output</h3>
 178 <p>
 179 Sumo will print termination message, objective function value and a
 180 table of thetas and omegas.<p>
 181
 182 Output could look like this:<p>
 183
 184 <pre>
 185 0MINIMIZATION SUCCESSFUL
 186  NO. OF FUNCTION EVALUATIONS USED:  111
 187  NO. OF SIG. DIGITS IN FINAL EST.:  4.3
 188
 189 Objective function value: 742.051
 190
 191      THETA                         OMEGA                    SIGMA
 192 TH1  0.00555    (0.0712)     OM1   0.497      (0.632)  SI1  0.1281     (0.207)
 193 TH2  1.34       (0.0596)     OM2   0.3768     (0.246)
 194 </pre>
 195
 196 <h3 class="heading1">Examples</h3>
 197 <p>
 198     Get summary from an output file:
 199 <p class="style2">
 200     $ sumo.pl output.lst
 201 </div>
 202 <p align="justify">&nbsp;</p>
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