Dockerfile

   1
   2 ### Dockerfile for SMID-DB.org
   3
   4 FROM debian:buster
   5
   6 LABEL maintainer="lam87@cornell.edu"
   7
   8 EXPOSE 8088
   9
  10 RUN mkdir -p  /home/production/local-lib
  11
  12 # install prerequisites (libexpat1-dev is needed for XML libraries)
  13 #
  14 RUN apt-get update && apt-get -y install apt-utils imagemagick screen nmap git lynx postgresql postgresql-server-dev-11 cpanminus build-essential perl-doc curl libexpat1-dev libpq-dev
  15
  16 RUN curl -sSL https://deb.nodesource.com/gpgkey/nodesource.gpg.key | apt-key add -
  17
  18 # Add the desired NodeSource repository
  19 #
  20 ENV VERSION=node_10.x
  21
  22 RUN echo "deb https://deb.nodesource.com/node_10.x  buster main" | tee /etc/apt/sources.list.d/nodesource.list
  23 RUN echo "deb-src https://deb.nodesource.com/node_10.x buster main" | tee -a /etc/apt/sources.list.d/nodesource.list
  24
  25 # Update package lists and install Node.js
  26 #
  27 RUN apt-get update && apt-get install nodejs -y
  28
  29 RUN git clone https://github.com/solgenomics/SMMID /home/production/SMMID
  30
  31 COPY build.sh /
  32
  33 RUN bash /build.sh
  34
  35 COPY entrypoint.sh /
  36 COPY smmid_local.conf.docker /home/production/SMMID/smmid_local.conf
  37
  38 WORKDIR /home/production/SMMID
  39
  40 RUN git checkout relational_smid
  41
  42 ENV PERL5LIB=/home/production/SMMID/lib:/home/production/local-lib/lib/perl5
  43 ENV CATALYST_HOME=/home/production/SMMID
  44
  45 ENTRYPOINT bash /entrypoint.sh
  46
  47
  48