Dockerfile

   1
   2 ### Dockerfile for SMID-DB.org
   3
   4 FROM debian:buster
   5
   6 LABEL maintainer="lam87@cornell.edu"
   7
   8 EXPOSE 8088
   9
  10 RUN mkdir -p  /home/production/local-lib
  11
  12
  13 # install prerequisites (libexpat1-dev is needed for XML libraries)
  14
  15 RUN apt-get update && apt-get -y install apt-utils imagemagick screen nmap git lynx postgresql postgresql-server-dev-11 cpanminus build-essential perl-doc curl libexpat1-dev
  16
  17 RUN curl -sSL https://deb.nodesource.com/gpgkey/nodesource.gpg.key | apt-key add -
  18
  19 # Add the desired NodeSource repository
  20 ENV VERSION=node_10.x
  21
  22 RUN echo "deb https://deb.nodesource.com/node_10.x  buster main" | tee /etc/apt/sources.list.d/nodesource.list
  23 RUN echo "deb-src https://deb.nodesource.com/node_10.x buster main" | tee -a /etc/apt/sources.list.d/nodesource.list
  24
  25 # Update package lists and install Node.js
  26 RUN apt-get update && apt-get install nodejs -y
  27
  28 RUN git clone https://github.com/solgenomics/SMMID /home/production/SMMID
  29
  30 WORKDIR /home/production/SMMID
  31
  32 COPY build.sh /
  33
  34 RUN bash /build.sh
  35
  36 COPY entrypoint.sh /
  37 COPY smmid_local.conf.docker /home/production/SMMID/smmid_local.conf
  38
  39 RUN git checkout relational_smid
  40
  41 ENV PERL5LIB=/home/production/SMMID/lib:/home/production/local-lib/lib/perl5
  42 ENV CATALYST_HOME=/home/production/SMMID
  43
  44 ENTRYPOINT bash /entrypoint.sh
  45
  46
  47