test/em_fire/chem/12x1.pbs

   1 #!/bin/bash
   2 # copy this script to your run directory and modify as desired
   3
   4 # Set the number of nodes and processes per node
   5 # each node contains 12 processing cores
   6 #PBS -l nodes=1:ppn=12
   7
   8 # Set the maximum amount of the time the job will run (HH:MM:SS)
   9 #PBS -l walltime=09:00:00
  10
  11 # Give the job a name
  12 #PBS -N chem_12x1
  13
  14 # Keep all environment variables from the current session (PATH, LD_LIBRARY_PATH, etc)
  15 #PBS -V
  16
  17 # Merge stderr and stdout
  18 #PBS -j oe
  19
  20 # Set log file
  21 #PBS -o 12x1.log
  22
  23 # Change to the run directory (where job was submitted)
  24 cd $PBS_O_WORKDIR
  25
  26 WD=12x1
  27 rm -rf $WD
  28 mkdir $WD
  29 cd $WD
  30 rm -f rsl.* wrfout* wrfrst* core*
  31 pwd
  32 ln -s ../ideal.exe .
  33 #ln -s ../input_fc .
  34 #ln -s ../input_ht .
  35 #ln -s ../input_lu .
  36 ln -s ../input_sounding .
  37 ln -s ../LANDUSE.TBL .
  38 ln -s ../namelist.fire .
  39 ln -s ../namelist.fire_emissions .
  40 ln -s ../namelist.input .
  41 ln -s ../wrf.exe .
  42 if [ -e ../input_tign_g ]
  43 then
  44   ln -s ../input_tign_g .
  45 fi
  46
  47
  48 #cat $PBS_NODEFILE | sort -u > nodes
  49 cat $PBS_NODEFILE > nodes
  50 env > env.log
  51 which mpirun_rsh >> env.log
  52 mpirun -np 1 -f nodes ./ideal.exe
  53 mv rsl.error.0000 ideal.error.log
  54 mv rsl.out.0000 ideal.out.log
  55 #matlab < ../make_usgs.m
  56 mpirun -np 12 -f nodes ./wrf.exe
  57