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descriptionautomatic DNA-based phylogenetic tree generator
ownerpasky@ucw.cz
last changeTue, 8 Feb 2011 08:14:52 +0000 (8 09:14 +0100)
URLgit://repo.or.cz/autophylo.git
https://repo.or.cz/autophylo.git
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readme

This is a tool for automatic creation of phylogenetic tree based on a set of genome files. It works based on minimum spanning tree out of an each-to-each distance matrix.

It is made from a couple of modular scripts that can be put together as needed, and has support for custom plug-in DNA metric.

shortlog
2011-02-08 Petr BaudisAdd comparator based on Needleman-Wunsch scoremaster commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-08 Petr Baudisex_rna16s: Add some procaryota RNA 16S samples commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-08 Petr Baudiscmp_diff: Account for replaces properly commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-08 Petr Baudisex_hoxa1: Add real tree description commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-08 Petr BaudisAdd hoxa1-mrna, hoxa1 (dna) DNA sample sets commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-07 Petr BaudisAdd ex_betaglobin mammals HBB sample set commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-07 Petr Baudismatrix_to_tree.sh: Allow for large number of samples commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-07 Petr Baudistree_render.sh: Allow for labels containing spaces commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-07 Petr BaudisREADME: Add usage example commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-07 Petr Baudiscmp_diff, cmp_gzip: Implement naive comparators commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-07 Petr Baudismatrix_gen.sh: Fix output order commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-07 Petr BaudisCreate virtual ancestors for joints of components commit | commitdiff | tree | snapshot (tar.gz zip)
2011-02-06 Petr BaudisInitial commit - base framework, cmp_gencompress, ex_class commit | commitdiff | tree | snapshot (tar.gz zip)
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13 years ago master log | tree
automatic DNA-based phylogenetic tree generator