t/data/blastp2215.blast

   1 BLASTP 2.2.15 [Oct-15-2006]
   2 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
   3 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman
   4 (1997), "Gapped BLAST and PSI-BLAST: a new generation of
   5 protein database search programs", Nucleic Acids Res. 25:3389-3402.
   6
   7 Reference: Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei
   8 Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
   9 Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
  10 protein database searches with composition-based statistics
  11 and other refinements", Nucleic Acids Res. 29:2994-3005.
  12
  13 RID: 1169055516-21385-22799250964.BLASTQ4
  14
  15
  16 Database: All non-redundant GenBank CDS
  17 translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  18            4,460,989 sequences; 1,533,424,333 total letters
  19 Query= gi|15608519|ref|NP_215895.1| pyrimidine regulatory protein PyrR [Mycobacterium
  20 tuberculosis H37Rv]
  21 Length=193
  22
  23
  24                                                                    Score     E
  25 Sequences producing significant alignments:                       (Bits)  Value
  26
  27 gi|15608519|ref|NP_215895.1|  pyrimidine regulatory protein Py...   332    8e-90
  28 gi|55670580|pdb|1W30|A  Chain A, Pyrr Of Mycobacterium Tubercu...   331    1e-89
  29 gi|41407212|ref|NP_960048.1|  pyrimidine regulatory protein Py...   286    5e-76
  30 gi|118464931|ref|YP_882576.1|  PyrR bifunctional protein [Myco...   285    1e-75
  31 gi|118617395|ref|YP_905727.1|  pyrimidine operon regulatory pr...   273    2e-72
  32 gi|118473305|ref|YP_887358.1|  PyrR bifunctional protein [Myco...   258    1e-67
  33 gi|89341207|ref|ZP_01193452.1|  Phosphoribosyltransferase [Myc...   254    1e-66
  34 gi|120403643|ref|YP_953472.1|  Uracil phosphoribosyltransferas...   254    2e-66
  35 gi|92907430|ref|ZP_01276210.1|  Uracil phosphoribosyltransfera...   244    2e-63
  36 gi|111024097|ref|YP_707069.1|  probable uracil phosphoribosylt...   238    8e-62
  37 Query= gi|15595598|ref|NP_249092.1| dihydroorotase [Pseudomonas aeruginosa PAO1]
  38 Length=423
  39
  40
  41                                                                    Score     E
  42 Sequences producing significant alignments:                       (Bits)  Value
  43
  44 gi|15595598|ref|NP_249092.1|  dihydroorotase [Pseudomonas aeru...   775    0.0
  45 gi|84324488|ref|ZP_00972546.1|  COG0044: Dihydroorotase and re...   771    0.0
  46 gi|116054132|ref|YP_788575.1|  noncatalytic dihydroorotase-lik...   770    0.0
  47 gi|309886|gb|AAA25977.1|  dihydroorotase-like                       768    0.0
  48 gi|94415759|ref|ZP_01295595.1|  hypothetical protein PaerP_010...   744    0.0
  49 gi|26991676|ref|NP_747101.1|  dihydroorotase [Pseudomonas puti...   628    4e-179
  50 gi|82736201|ref|ZP_00899061.1|  Dihydroorotase multifunctional...   627    7e-179
  51 gi|77461536|ref|YP_351043.1|  dihydroorotase [Pseudomonas fluo...   624    7e-178
  52 gi|66043748|ref|YP_233589.1|  dihydroorotase [Pseudomonas syri...   622    4e-177
  53 gi|118056991|ref|ZP_01525457.1|  dihydroorotase, multifunction...   621    5e-177
  54 Query= gi|15595600|ref|NP_249094.1| pyrimidine regulatory protein PyrR [Pseudomonas
  55 aeruginosa PAO1]
  56 Length=170
  57
  58
  59                                                                    Score     E
  60 Sequences producing significant alignments:                       (Bits)  Value
  61
  62 gi|15595600|ref|NP_249094.1|  pyrimidine regulatory protein Py...   320    2e-86
  63 gi|49081516|gb|AAT50158.1|  PA0403 [synthetic construct]            317    2e-85
  64 gi|94415757|ref|ZP_01295593.1|  hypothetical protein PaerP_010...   310    3e-83
  65 gi|119856461|ref|ZP_01637894.1|  Uracil phosphoribosyltransfer...   262    8e-69
  66 gi|67154890|ref|ZP_00416635.1|  Uracil phosphoribosyltransfera...   261    2e-68
  67 gi|26991674|ref|NP_747099.1|  pyrimidine regulatory protein Py...   260    3e-68
  68 gi|28872153|ref|NP_794772.1|  pyrimidine regulatory protein Py...   258    9e-68
  69 gi|104783978|ref|YP_610476.1|  transcriptional regulator PyrR ...   256    3e-67
  70 gi|71736513|ref|YP_272777.1|  pyrimidine operon regulatory pro...   256    5e-67
  71 gi|70733117|ref|YP_262890.1|  pyrimidine regulatory protein Py...   256    5e-67
  72 Query= gi|15598723|ref|NP_252217.1| dihydroorotase [Pseudomonas aeruginosa PAO1]
  73 Length=348
  74
  75
  76                                                                    Score     E
  77 Sequences producing significant alignments:                       (Bits)  Value
  78
  79 gi|15598723|ref|NP_252217.1|  dihydroorotase [Pseudomonas aeru...   690    0.0
  80 gi|84319753|ref|ZP_00968143.1|  COG0418: Dihydroorotase [Pseud...   687    0.0
  81 gi|116051526|ref|YP_789638.1|  dihydroorotase, homodimeric typ...   686    0.0
  82 gi|94415333|ref|ZP_01295177.1|  hypothetical protein PaerP_010...   677    0.0
  83 gi|104780416|ref|YP_606914.1|  dihydroorotase [Pseudomonas ent...   618    5e-176
  84 gi|77460740|ref|YP_350247.1|  dihydroorotase [Pseudomonas fluo...   617    1e-175
  85 gi|26987822|ref|NP_743247.1|  dihydroorotase [Pseudomonas puti...   616    2e-175
  86 gi|70732180|ref|YP_261936.1|  dihydroorotase [Pseudomonas fluo...   614    8e-175
  87 gi|118058820|ref|ZP_01527280.1|  dihydroorotase, homodimeric t...   613    1e-174
  88 gi|82737454|ref|ZP_00900303.1|  Dihydroorotase homodimeric typ...   613    2e-174
  89 Query= gi|15600734|ref|NP_254228.1| dihydroorotase [Pseudomonas aeruginosa PAO1]
  90 Length=445
  91
  92
  93                                                                    Score     E
  94 Sequences producing significant alignments:                       (Bits)  Value
  95
  96 gi|15600734|ref|NP_254228.1|  dihydroorotase [Pseudomonas aeru...   871    0.0
  97 gi|116053692|ref|YP_794019.1|  dihydroorotase [Pseudomonas aer...   870    0.0
  98 gi|84318214|ref|ZP_00966642.1|  COG0044: Dihydroorotase and re...   869    0.0
  99 gi|94417254|ref|ZP_01297073.1|  hypothetical protein PaerP_010...   831    0.0
 100 gi|77461883|ref|YP_351390.1|  dihydroorotase [Pseudomonas fluo...   658    0.0
 101 gi|104782179|ref|YP_608677.1|  dihydroorotase [Pseudomonas ent...   634    0.0
 102 gi|70733466|ref|YP_263241.1|  dihydroorotase [Pseudomonas fluo...   622    2e-177
 103 gi|118059665|ref|ZP_01528121.1|  amidohydrolase [Pseudomonas m...   606    2e-172
 104 gi|50084596|ref|YP_046106.1|  dihydroorotase [Acinetobacter sp...   562    3e-159
 105 gi|117621557|ref|YP_857112.1|  dihydroorotase [Aeromonas hydro...   482    3e-135
 106
 107   Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding
 108 environmental samples
 109     Posted date:  Jan 16, 2007  5:53 PM
 110   Number of letters in database: 1,533,424,333
 111   Number of sequences in database:  4,460,989
 112 Lambda     K      H
 113    0.319    0.139    0.394
 114 Gapped
 115 Lambda     K      H
 116    0.267   0.0410    0.140
 117 Matrix: BLOSUM62
 118 Gap Penalties: Existence: 11, Extension: 1
 119 Number of Sequences: 4460989
 120 Number of Hits to DB: 469576580
 121 Number of extensions: 20639621
 122 Number of successful extensions: 52293
 123 Number of sequences better than 10: 358
 124 Number of HSP's better than 10 without gapping: 0
 125 Number of HSP's gapped: 52059
 126 Number of HSP's successfully gapped: 644
 127 Length of database: 1533424333
 128 T: 11
 129 A: 40
 130 X1: 16 (7.4 bits)
 131 X2: 38 (14.6 bits)
 132 X3: 64 (24.7 bits)
 133 S1: 41 (20.4 bits)
 134
 135