t/SearchIO/Writer/HTMLWriter.t

   1 # -*-Perl-*- Test Harness script for Bioperl
   2 # $Id: SearchIO_HTMLWriter.t 14995 2008-11-16 06:20:00Z cjfields $
   3
   4 use strict;
   5
   6 BEGIN {
   7     use lib '.';
   8     use Bio::Root::Test;
   9
  10     test_begin(-tests => 8);
  11
  12     use_ok('Bio::SearchIO');
  13     use_ok('Bio::SearchIO::Writer::HTMLResultWriter');
  14 }
  15
  16 my ($searchio, $result,$iter,$hit,$hsp);
  17
  18 $searchio = Bio::SearchIO->new('-format' => 'blast',
  19                    '-file'   => test_input_file('HUMBETGLOA.tblastx'));
  20
  21 $result = $searchio->next_result;
  22
  23 isa_ok($result,'Bio::Search::Result::ResultI');
  24 $hit = $result->next_hit;
  25 is($hit->accession, 'AE000479');
  26 is($hit->bits, 33.6);
  27 $hsp = $hit->next_hsp;
  28 is($hit->hsp->bits,$hsp->bits);
  29 isa_ok($hsp->get_aln,'Bio::Align::AlignI');
  30
  31 my $outfile = test_output_file();
  32 my $writerhtml = Bio::SearchIO::Writer::HTMLResultWriter->new();
  33 my $outhtml = Bio::SearchIO->new(-writer => $writerhtml,
  34                 -file   => ">$outfile");
  35 $outhtml->write_result($result, 1);
  36 ok(-s $outfile);
  37
  38 # tests checking HTML file output?