| blob | 6da374955e530d620a87423bfbd00d14f3e5ed26 |
1 #NEXUS
4 BEGIN DATA;
5 DIMENSIONS NTAX=32 NCHAR=2147;
7 [!These ribosomal sequences are those used in:
9 Lake, J.A. 1988. Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature, 331:184-186.
11 Thanks to James Lake for supplying these data, March 1990.
13 The two trees in the file are the most parsimonious trees found.
15 ]
16 FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ;OPTIONS MSTAXA=UNCERTAIN IGNORE=UNINFORM ;
18 MATRIX
20 [ 10 20 30 40 50 60 70 80 90 100]
21 [ . . . . . . . . . .]
23 Homo_sapiens --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77]
24 Rattus_norvegicus --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77]
25 Xenopus_laevis --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACG-CGGGGAGGTAGTGACGAAAA [77]
26 A._salina --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----AGCA-CGGGGAGGTAGTGACGAAAA [77]
27 S._cerevisiae --------TAT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----AATT-CAGGGAGGTAGTGACAATAA [78]
28 P.MICA ---------AT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CAGGGAGGTAGTGACAAGAA [77]
29 D.DISC --------TAA-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACTCAATCCC-----AATA-CGGGGAAGTAGTGACAATAA [78]
30 T.BRUC --------GAT-----CTGGTTGATTCTGCC---AGTAGTCATATGCTTGTTTCAAGGATGCCCAATGTCGAAAAAATA-CGATGAGGCAGCGAAAAGAA [83]
31 E.GRAC --------AAT-----CTGGTTGATCCTGCC---AGCAGTCATATGCTTTGTTCAAGGGTGCCCCATGCA-AAGACACT-CTGTGAGGCAGCGACGAACA [82]
32 Zea_mays --------TAC-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CGGGGAGGTAGTGACAATAA [78]
33 D._mobilis ------TAACT-----CCGGTTGATCCTGCC---GGTCCCGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGAAACCGTGACGGGGCCACCCCGA [81]
34 S._solfataricus --------ATT-----CCGGTTGATCCTGCC---GGACCCGACCGCTATCGGGGTAGGGTCCCCAATGCG-----CGAAAGCGTGAGGGCGCTACCCCGA [79]
35 T._tenax --------AAA-----CCGGTTGATCCTGCC---GGACCTGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGCAACCGCGACGGGGCCACCCCGA [79]
36 M._vannielii --------ATT-----CCGGTTGATCCCGCC---GGAGGCTACTGCTATTGGGGTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGGACCCCAA [79]
37 MB._formicicum --------AGT-----CCGTTTGATCCTGGC---GGAGGCCACTGCTATTGGGTTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGAAACCCAA [79]
38 MS._hungatei --------ATT-----CTGGTTGATCCTGCC---AGAGGCCACTGCTATCGGGGTTTGATTTACCATGCG-----GGCAACCGTGATAAGGAAACCCCGA [79]
39 H._volacanii --------ATT-----CCGGTTGATCCTGCC---GGAGGTCATTGCTATTGGGGTCCGATTTACACTGCA-----CGCAAGTGCGATAAGGGGACCCCAA [79]
40 HC._morrhuae --------ATT-----CCGGTTGATCCTGCC---GGAGGCTATTGCTATCGGGGTCCGATTTACACTGCA-----CGCCAGTGCGATAAGGGGACCCCGA [79]
41 H.HALO --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79]
42 H._cutirubrum --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79]
43 AN._nidulans --CAAAATGGA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTGGCGGCGTGC--TCCGCAATGGG-----CGCAAGCCTGACGGAGCAACGCCGC [84]
44 HE.CHL ----------------------GATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [69]
45 Bc._subtilis --TTTATCGGA-----GAGTTTGATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGA-----CGAAAGTCTGACGGAGCAACGCCGC [84]
46 MY.CAP ----AAAATGA-----GAGTTTGATCCTGGCTCAGGAT--AAACGCTGGCGGCTGGC--TTCACAATGGA-----CGAAAGTCTGATGAAGCAATGCCGC [82]
47 E._coli ---AAATTGAA-----GAGTTTGATCATGGCTCAGATT--GAACGCTGGCGGCAGGC--TGCACAATGGG-----CGCAAGCCTGATGCAGCCATGCCGC [83]
48 MYX.XA ---CAATTGGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCAACGCCGC [83]
49 P.TEST --CGAACTATA-----GAGTTTGATCCTGGCTCAGATT--GAACGCTGGCGGCATGC--TGGACAATGGG-----CGAAAGCCTGATCCAGCAATGCCGC [84]
50 AG.TUM -CTCAACTTGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCAGGC--TGGACAATGGG-----CGCAAGCCTGATCCAGCCATGCCGC [85]
51 DV.DES --TGAACTGGA-----GAGTTTGATTCTGGCTCAGATT--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCGACGCCGC [84]
52 BA.FRG -TTACAACGAA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTAGCTACAGGC--TGGTCAATGGG-----CGCTAGCCTGAACCAGCCAAGTAGC [85]
53 'Zea_mays_(chloroplast)' --CTCAT-GGA-----GAGTTCGATCCTGGCTCAGGAT--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [83]
54 T.AMIT ATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAG--GAACGCTAGCTATATGC--TGGACAATGGG-----CGAAAGCCCGATCCAGCAATATCGC [91]
56 [ 110 120 130 140 150 160 170 180 190 200]
57 [ . . . . . . . . . .]
59 Homo_sapiens ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148]
60 Rattus_norvegicus ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148]
61 Xenopus_laevis ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCT [148]
62 A._salina ATAACG-AT-GC-AGG-------------------ACTCATCCGAGGCC--CTGTGATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCC [148]
63 S._cerevisiae ATAACG-AT-AC-AGG-------------------GCCCATTCG-GGTC--TTGTAATTGGAATGAGTACAATGT-AA---ATACCTTAACGAGGA-ACA [148]
64 P.MICA ATAACA-AT-AC-AGG-------------------GCATATCTG---TC--TTGTAATTGGAATGAGTAGAATTT-AA---ATCCCTTTACGAGTA-CCA [145]
65 D.DISC ATATCA-AT-AC-CTA-------------------TCCTTTTTG-GAGG----GCAATTGAAATGAACACAAATT-AA---AACTCTTAATTAACA--CA [145]
66 T.BRUC ATAGAG-CCGAC-CGT-------------------GCCCTAGTG-CATG--GTTGTTTTCAATGGGGGATACTCA-AACCCATCCAATATCGAGTA-ACA [157]
67 E.GRAC GTAGCA-AC-CC-CGTC------------------GGCCTTACG-TGCCGATGGGGCTTGGAATGGACGCTATCC-AA---AGACAGCCGTGAGTA-TCA [155]
68 Zea_mays ATAACA-AT-AC-CGG-------------------GCGCGTTAG-TGTC--TGGTAATTGGAATGAGTACAATCT-AA---ATCCCTTAACGAGGA-TCC [148]
69 D._mobilis GTGCCC-CC-TT-ACG-------------------GG------G-GCTT--TTCCC-------------CGCTGT-AG---GAAGGCGGGG---GA-ATA [129]
70 S._solfataricus GTGCCT-CC-GC-AAG-------------------GA------G-GCTT--TTCCC-------------CGCTCT-AA---AAAGGCGGGG---GA-ATA [127]
71 T._tenax GTGCCG-GG-CG-AAG-------------------AGCC---CG-GCTT--TTGCC-------------CGGTGT-AA---GGAGCCGGGC---GA-ATA [130]
72 M._vannielii GTGC-T-CA-TGCACA-------------------GCAT---GG-GCTT--TTATC-------------AAGTGT-AA---ACAGCTTGAG---GA-ATA [130]
73 MB._formicicum GTGCCA-CT-CTTAAC-------------------GGGG---TG-GCTT--TTCTT-------------AAGTGT-AA---AAAGCTTTTG---GA-ATA [131]
74 MS._hungatei GTGC----C-AGCACA-------------------GGCT---GG-CTGT--CCACC--------------AGTGT-AA---ATAACT-GGT---GA-AGA [126]
75 H._volacanii GTGCGAGGG-CA-TAT-------------------AGTC---CTCGCTT--TTCTC-------------GACCGT-AA---GGCGGTCGAG---GA-ATA [132]
76 HC._morrhuae GTGCGAGGG-CA-TAC-------------------AGTC---CTCGCTT--TTCGT-------------GACCGT-AA---GAAGGTCTCA---GA-ATA [132]
77 H.HALO GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132]
78 H._cutirubrum GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132]
79 AN._nidulans GTGGGG-GA-GG-AAGGTT--TT-T-GGACTGTAAACCC---CT-TTTC--TCAGG-------------GAAGAA-GA---AAG---------------- [138]
80 HE.CHL GTGGGG-GA-TG-AAGGTC--TT-C-GGATTGTAAACCC---TT-GTCT--TCGGG-------------GAAGAA------------GTT---------- [121]
81 Bc._subtilis GTGAGT-GA-TG-AAGGTT--TT-C-GGATCGTAAAGCT---CT-GTTG--TTAGG-------------GAAGAA-CA---AGTACCGTTC---GA-ATA [150]
82 MY.CAP GTGAGT-GA-TG-ACGGCC--TT-C-GGGTTGTAAAGCT---CT-GTTG--TAAGG-------------GAAGAA-AA---AATAGAGTAG---GA-A-A [147]
83 E._coli GTGTAT-GA-AG-AAGGCC--TT-C-GGGTTGTAAAGTA---CT-TTCA--GCGGG-------------GAGGAAGGG---AGTAAAGTT-----A-ATA [148]
84 MYX.XA GTGTGT-GA-TG-AAGGTC--TT-T-GGATTGTAAAGCA---CT-TTCG--ACCGG-------------GAAGAA-AA---CCCGTTGGCT---AACATC [150]
85 P.TEST GTGCAG-GA-TG-AAGGCC--CT-C-GGGTTGTAAACTG---CT-TTTG--TACGG-------------AACGAA--A---AGCCTGGGGC---TA-ATA [149]
86 AG.TUM GTGAGT-GA-TG-AAGGCC--TT-A-GGGTTGTAAAGCT---CT-TTCA--CCGGA-------------GAAGAT-AA---------------------- [136]
87 DV.DES GTGAGG-GA-TG-AAGGTT--TT-C-GGATCGTAAACCT---CT-GTCA--GAAGG-------------GAAGAA-AC---TACGTTGTGC---TA-ATC [150]
88 BA.FRG GTGAAG-GA-TG-AAGGCT--CTATGGGTCGTAAACTT---CT-TTTA-?-TATAA-------------GAATAA------AGTGCAGTAT---GT-ATA [151]
89 'Zea_mays_(chloroplast)' GTGGAG-GT-GG-AAGGCC--TA-C-GGGTCGTCAACTT---CT-TTTC--TCGGA-------------GAAGAA------------------------- [132]
90 T.AMIT GTGAGT-GA-AG-AAGGGCAATG-C-CGCTTGTAAAGCT---CT-TTCG--TCGAG-------------TGCG--------------------------- [140]
92 [ 210 220 230 240 250 260 270 280 290 300]
93 [ . . . . . . . . . .]
95 Homo_sapiens ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219]
96 Rattus_norvegicus ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219]
97 Xenopus_laevis ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219]
98 A._salina ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCG [219]
99 S._cerevisiae ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219]
100 P.MICA ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCG [216]
101 D.DISC ATTG?AG-----------------------------GGCAAGTCTGGTGCCAGCRGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCA [216]
102 T.BRUC ATTGGAG-----------------------------GACAAGTCTGGTGCCAGCACCCGCGGTAATTCCAGCTCCAAAAGCGTATATTAATGCTGTTGCT [228]
103 E.GRAC ACCGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCTGCGGTAATTCCAGCTCCGAGGGCGTATACTAACATTGCTGCT [226]
104 Zea_mays ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219]
105 D._mobilis AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGATTATTGGG [200]
106 S._solfataricus AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCTCCGCGAGTGGTCGGGGTGATTACTGGG [198]
107 T._tenax AGCGGGG-----------------------------GGTAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCAGGGTGATTACTGGG [201]
108 M._vannielii AGGGCTG-----------------------------GGCAAGTTCGGTGCCAGCAGCCGCGGTAATACCGACGGCCCGAGTGGTAGCCACTCTTATTGGG [201]
109 MB._formicicum AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTGGCCGTTTTTATTGGG [202]
110 MS._hungatei AGGGC?G-----------------------------GGCAAG?????--------------GTAATACCG-------GAGTGGTGGCCGCTATTACTGGG [176]
111 H._volacanii AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGACCGATATTATTGGG [203]
112 HC._morrhuae AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCGAGTGATAGCCACTATTATTGGG [203]
113 H.HALO AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203]
114 H._cutirubrum AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203]
115 AN._nidulans -----------TGACGGTACCTGAGGAATAAGCCTCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGGAGAGGCAAGCGTTATCCGGAATTATTGGG [227]
116 HE.CHL ----------TTGACGGTACCCGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGG [211]
117 Bc._subtilis GGGCGGTACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGG [250]
118 MY.CAP TGACTTTATCTTGACAGTACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTATCCGGATTTATTGGG [247]
119 E._coli CCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [248]
120 MYX.XA CAACGG---CTTGACGGTACCGGGAGAAGAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATTATTGGG [247]
121 P.TEST TCCCCGGGTCATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGG [249]
122 AG.TUM -----------TGACGGTATCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATTACTGGG [225]
123 DV.DES AG-CAGCGTACTGACGGTACCTTCAAAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [249]
124 BA.FRG C-----TGTTTTGTATGTATTATATGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGG [246]
125 'Zea_mays_(chloroplast)' -------ACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGG [225]
126 T.AMIT ----CGATCAT-GACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGG [235]
128 [ 310 320 330 340 350 360 370 380 390 400]
129 [ . . . . . . . . . .]
131 Homo_sapiens GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266]
132 Rattus_norvegicus GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266]
133 Xenopus_laevis GTTAAAAAGCTCGTAGTTGGATCTTGGGATCGAGCTGGCGGTCCGCCGCGAGGC---------------------------------------------- [273]
134 A._salina GTTAAAAAGCTCGTAGTTGGATATGGGTCTCGGTCGGGTGGTGCCGCCTCAC------------------------------------------------ [271]
135 S._cerevisiae GTTAAAAAGCTCGTAGTTGAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTT------------------------------------------------ [271]
136 P.MICA GTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGACGACCGGTCCGCCTCT-------------------------------------------------- [266]
137 D.DISC GTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTT------------------------------------------- [273]
138 T.BRUC GTTAAAGGGTTCGTAGTTGAACTGTGGGCCACGTAGTTTTGTGCCGTGCCAGTC----------CCGTCCA--------CCTCGGAC-------GTGTT- [302]
139 E.GRAC GTTAAAACACTTGTAGTCTGCCTACGGGCTGCA-GGTCTGCTGGGTGGCCGGTTTGTTGTTTCTCTGGCCAGGGAAGGACCTCGGTTCGACCCTGTGTTG [325]
140 Zea_mays GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGGTGCCGCCGCC---------------------------------------------------- [267]
141 D._mobilis CCTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCCCCTC-------------------------------------------------------- [236]
142 S._solfataricus CCTAAAGCGCCTGTAGCCG--------GCCCACCAAGTCGCCCC-------------------------------------------------------- [234]
143 T._tenax CTTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCGCTCC-------------------------------------------------------- [237]
144 M._vannielii CCTAAAGCGTCCGTAGCCG--------GTCCAGTAAGTCCCTGT-------------------------------------------------------- [237]
145 MB._formicicum CCTAAAGCGTTCGTAGCCG--------GCTTGATAAGTCTCTGG-------------------------------------------------------- [238]
146 MS._hungatei CTTAAAGGGTCCGTAGCTG--------GATATACAAGTCCCTTG-------------------------------------------------------- [212]
147 H._volacanii CCTAAAGCGTCCGTAGCCG--------GCCACGAAGGTTCATCG-------------------------------------------------------- [239]
148 HC._morrhuae CCTAAAGCGTCCGTAGCCG--------GCCGAACAGGTCCGTCG-------------------------------------------------------- [239]
149 H.HALO CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239]
150 H._cutirubrum CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239]
151 AN._nidulans CGTAAAGCGCCTGCAGGCG--------GTTAATCAAGTCTGTTG-------------------------------------------------------- [263]
152 HE.CHL CGTAAAGCGCGTGCAGGCG--------GACATGTAAGTCTGAGG-------------------------------------------------------- [247]
153 Bc._subtilis CGTAAAGCGCTCGCAGGCG--------GTTTCTTAAGTCTGATG-------------------------------------------------------- [286]
154 MY.CAP CGTATAGGGTGCGTAGGCG--------GTTTTGCAAGTTTGAGG-------------------------------------------------------- [283]
155 E._coli CGTAAAGCGCACGCAGGCG--------GTTTGTTAAGTCAGATG-------------------------------------------------------- [284]
156 MYX.XA CGTAAAGCGCGTGTAGGCG--------GCGTGACAAGTCGGGTG-------------------------------------------------------- [283]
157 P.TEST CGTAAAGCGTGCGCAGGCG--------GTTTTGTAAGACAGTGG-------------------------------------------------------- [285]
158 AG.TUM CGTAAAGCGCACGTAGGCG--------GATATTTAAGTCAGGGG-------------------------------------------------------- [261]
159 DV.DES CGTAAAGCGCACGTAGGCT--------GTAGTGTAAGTCAGGGG-------------------------------------------------------- [285]
160 BA.FRG TTTAAAGGGAGCGTAGGTG--------GACTGGTAAGTCAGTTG-------------------------------------------------------- [282]
161 'Zea_mays_(chloroplast)' CGTAAAGCGTCTGTAGGTG--------GCTTTTCAAGTCCGCCG-------------------------------------------------------- [261]
162 T.AMIT CGTAAAGGGCACGTAGGCG--------GTGAATCGGGTTGAAAG-------------------------------------------------------- [271]
164 [ 410 420 430 440 450 460 470 480 490 500]
165 [ . . . . . . . . . .]
167 Homo_sapiens ---------GCGAGGCGAGCCACCGCCC-GTCCCC---GCCCCTTGCCTCTCGG-CG-CCCC-------------------------------------- [313]
168 Rattus_norvegicus ---------GCGAGGCGGCTCAGCGCCCTGTCCCC---AGCCCCTGCCTCTCGG-CG-CCCC-------------------------------------- [314]
169 Xenopus_laevis --------GGCTAC-CGCCTGTCCCAGCCCCTGCCTCTCGGCGCCTCCCCGATG-CT-CTTG-------------------------------------- [324]
170 A._salina --------GGTGGTCACTGCCTCGATCGGACAATTCATTGGATCGTTCGGGGTG-CT-CTTA-------------------------------------- [323]
171 S._cerevisiae --------CGTGTACTGGATTTCCAACGGGGCCTT---TCCTTCTGGCTAACCT-TG-AGTC-------------------------------------- [320]
172 P.MICA ---------GGGTGAGTATCTGCTCGCCTGGCATC---TTCTT--GGAGAACGT-AG-CTGG-------------------------------------- [312]
173 D.DISC --------CGTGGT-TAAATCGACACCGGTATCTCT-TTCTTAATAGTTCAGCT-TG-TATT-------------------------------------- [323]
174 T.BRUC ------------TTGACCCACGCCCTCGTGGCCCG---TGAACACACTCAGATA-CA-AG--AAACACGGGAGCGGTTCCT------------CCTCACT [371]
175 E.GRAC GGCTGCAACGGCTGGACTCAACCCCCAGTGGTACG---TCCCTGCGCCCACCTC-TC-AGTCGATGGTGAGATCTGCTCCTGCCAAAAGTCTGCTTCACT [420]
176 Zea_mays ---------GTACG-GGCAGAACCGACCGGCTCGA---CCCTTCTGCCGGCGAT-GC-GCTC-------------------------------------- [314]
177 D._mobilis ---------------CTAAATTCCCG-------------------GGCTCAACC-CG-GG---------------------------------------- [260]
178 S._solfataricus ---------------TTAAAGTCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [258]
179 T._tenax ---------------TGAAATCCCCA-------------------GGCTCAACC-TG-GG---------------------------------------- [261]
180 M._vannielii ---------------TTAAATTCTCT-------------------GGCTTAACCA-G-AG---------------------------------------- [261]
181 MB._formicicum ---------------TGAAATCTCAC-------------------GGCTTAACCGTG-AG---------------------------------------- [263]
182 MS._hungatei ---------------AGAAATCCGCC-------------------GGCTTAACCG-G-TG---------------------------------------- [236]
183 H._volacanii ---------------GGAAATCCGCC-------------------AGCTCAACT-GG-CG---------------------------------------- [263]
184 HC._morrhuae ---------------GGAAATCCACC-------------------CGCTCAACG-GGTGG---------------------------------------- [264]
185 H.HALO ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263]
186 H._cutirubrum ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263]
187 AN._nidulans ---------------TCAAAGCGTGG-------------------GGCTCAACC-TC-AT---------------------------------------- [287]
188 HE.CHL ---------------TGAAAGCTTGG-------------------AGCTCAACT-CC-GA---------------------------------------- [271]
189 Bc._subtilis ---------------TGAAAGCCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [310]
190 MY.CAP ---------------TTAAAGTCCGG-------------------AGCTCAACT-CC-GG---------------------------------------- [307]
191 E._coli ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [308]
192 MYX.XA ---------------TGAAAGCCCTC-------------------AGCTCAACT-GA-GG---------------------------------------- [307]
193 P.TEST ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [309]
194 AG.TUM ---------------TGAAATCCCAG-------------------AGCTCAACT-CT-GG---------------------------------------- [285]
195 DV.DES ---------------TGAAATCCCAC-------------------GGCTCAACC-GT-GG---------------------------------------- [309]
196 BA.FRG ---------------TGAAAGTTTGC-------------------GGCTCAACC-GT-AA---------------------------------------- [306]
197 'Zea_mays_(chloroplast)' ---------------TCAAATCCCAG-------------------GGCTCAACC-CT-GG---------------------------------------- [285]
198 T.AMIT ---------------TGAAAGTCGCC-------------------AAA--AAGT-GG-CG---------------------------------------- [293]
200 [ 510 520 530 540 550 560 570 580 590 600]
201 [ . . . . . . . . . .]
203 Homo_sapiens --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [360]
204 Rattus_norvegicus --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [361]
205 Xenopus_laevis --------------ACTGAGTGTCC-CGG-----------------------------------GG-GC--------------CCGAAGCGTTTACTT-- [357]
206 A._salina --------------ACCGAGTGTCC-TGG-----------------------------------GT-GG--------------CCGATACGTTTACTT-- [356]
207 S._cerevisiae --------------CTTGTGGCTCT-TGG-----------------------------------CG-AA--------------CCAGGACTTTTACTT-- [353]
208 P.MICA --------------CACTTGACTGTGTGG-------------------------------TGCGGT-AT--------------CCAGGACTTTTACTT-- [350]
209 D.DISC --------------ATCTTTGATAG-TGC-----------------------------------TT-GT--------------TTGGACATTTCACTG-- [356]
210 T.BRUC --------------TTCACGCATGT-CATGCATGCGAGGGG------------------------G-CG--------------TCCGTGAATTTTACTGT [417]
211 E.GRAC GCAGGCCAAAGCGGTTTATGCCTCC-CGCACTGGCAACGGACACCAACAGGGGACCCAGC--CTCG-AG--------------CTGGGTAGTCTACCTCT [502]
212 Zea_mays --------------CTGGCCTTAAC-TGG-----------------------------------CC-GGGT------CGTGCCTCCGGGCCGTTACTT-- [355]
213 D._mobilis -------------------GACTGG-AGG-----------------------------------GG-A-------------------------------- [272]
214 S._solfataricus -------------------AACTGG-GGG-----------------------------------CG-A-------------------------------- [270]
215 T._tenax -------------------GGCAGG-GGG-----------------------------------CG-A-------------------------------- [273]
216 M._vannielii -------------------GACTGG-CAG-----------------------------------GG-A-------------------------------- [273]
217 MB._formicicum -------------------AATTGC-TGG-----------------------------------AG-A-------------------------------- [275]
218 MS._hungatei -------------------GCGTTC-AGG-----------------------------------GG-A-------------------------------- [248]
219 H._volacanii -------------------GGCGTC-CGG-----------------------------------TGAA-------------------------------- [276]
220 HC._morrhuae -------------------GACGTC-CGG-----------------------------------CGGA-------------------------------- [277]
221 H.HALO -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276]
222 H._cutirubrum -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276]
223 AN._nidulans -------------------ACAGGC-AAT-----------------------------------GG-A-------------------------------- [299]
224 HE.CHL -------------------AACGGC-CTT-----------------------------------GG-A-------------------------------- [283]
225 Bc._subtilis -------------------AGGGTC-ATT-----------------------------------GG-A-------------------------------- [322]
226 MY.CAP -------------------TTCGCC--TT-----------------------------------GA-A-------------------------------- [318]
227 E._coli -------------------AACTGC-ATC-----------------------------------TG-A-------------------------------- [320]
228 MYX.XA -------------------AAGTGC-GCC-----------------------------------CG-A-------------------------------- [319]
229 P.TEST -------------------AACTGC-CAT-----------------------------------TG-T-------------------------------- [321]
230 AG.TUM -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [297]
231 DV.DES -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [321]
232 BA.FRG -------------------AATTGC-AGC-----------------------------------TG-A-------------------------------- [318]
233 'Zea_mays_(chloroplast)' -------------------ACAGGC-GGT-----------------------------------GG-A-------------------------------- [297]
234 T.AMIT -------------------GAATGC-TCT-----------------------------------CG-A-------------------------------- [305]
236 [ 610 620 630 640 650 660 670 680 690 700]
237 [ . . . . . . . . . .]
239 Homo_sapiens ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [408]
240 Rattus_norvegicus ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [409]
241 Xenopus_laevis ----------------------------------TGAAAAAATTAGAGTGTTCCAAGCA----------GGC-CGCGTCGCCT-------GGATACTT-C [404]
242 A._salina ----------------------------------TGAACAAATTAGAGTGCTTAAAGCA----------GGTGCACCGCGCCT-------GAATATCA-C [404]
243 S._cerevisiae ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGC--GTATTGCTC-------GAATATAT-T [399]
244 P.MICA ----------------------------------TGAGGAAATTAGAGTGTTTCAAGCC----------AGT---TACGCCTT-------GAATACAT-T [395]
245 D.DISC ----------------------------------TGAGAAAATTGTGGTGTTTAAAGCA----------GGC--GTCTCGCCT-------GATCTTTTGC [403]
246 T.BRUC GACC--------------------------------AAAAA----AGTGCGACCAAAGCAGTCTGCCGAC-T--TGAATTACAAAGCATGGGATAACG-A [477]
247 E.GRAC GGTCCACCACCGGAGCCCACCGTCTTCGACACCCTGGAAAACTCAGTGTGCTCAAAGCATCCCCGCGACGGC--TGAATGTCCATCCATGGAATGTCA-A [599]
248 Zea_mays ----------------------------------TGAAGAAATTAGAGTGCTCAAAGCA----------AGC---CATCGCTCT------GGATACAT-T [401]
249 D._mobilis ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [285]
250 S._solfataricus ---------------------------------------------------------------------------TACTGGTG-------GGCTA----- [283]
251 T._tenax ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [286]
252 M._vannielii ---------------------------------------------------------------------------TACTGCTG-------GACTT----- [286]
253 MB._formicicum ---------------------------------------------------------------------------TACTATTA-------GCCTT----- [288]
254 MS._hungatei ---------------------------------------------------------------------------AACTGTAT-------TTCTA----- [261]
255 H._volacanii ---------------------------------------------------------------------------AACCACGT-------GGCTT----- [289]
256 HC._morrhuae ---------------------------------------------------------------------------AACCAGTC-------GGCTT----- [290]
257 H.HALO ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289]
258 H._cutirubrum ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289]
259 AN._nidulans ---------------------------------------------------------------------------AACTGATT-------GACTA----- [312]
260 HE.CHL ---------------------------------------------------------------------------AACTGGAT-------GTCTT----- [296]
261 Bc._subtilis ---------------------------------------------------------------------------AACTGGGG-------AACTT----- [335]
262 MY.CAP ---------------------------------------------------------------------------GACTGTTT-------TACTA----- [331]
263 E._coli ---------------------------------------------------------------------------TACTGGCA-------AGCTT----- [333]
264 MYX.XA ---------------------------------------------------------------------------AACTGTTG-------TGCTT----- [332]
265 P.TEST ---------------------------------------------------------------------------GACTGCAA-------GGCTA----- [334]
266 AG.TUM ---------------------------------------------------------------------------TACTGGGT-------ATCTT----- [310]
267 DV.DES ---------------------------------------------------------------------------TACTGCAC-------AACTT----- [334]
268 BA.FRG ---------------------------------------------------------------------------TACTGTCA-------GTCTT----- [331]
269 'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------AACTACCA-------AGCTG----- [310]
270 T.AMIT ---------------------------------------------------------------------------AACCAATT-------CACTT----- [318]
272 [ 710 720 730 740 750 760 770 780 790 800]
273 [ . . . . . . . . . .]
275 Homo_sapiens AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [462]
276 Rattus_norvegicus AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [463]
277 Xenopus_laevis AGCTAGGAATAA---TGGAATAGGA-------------C-TCCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [458]
278 A._salina AGCATGGAATGA---TGGAATAGGA-------------C-CTCGGTCTTATTATG-------------TTGGTTTTC------TGGACTTG--------- [459]
279 S._cerevisiae AGCATGGAATAA---TAGAATAGGA-------------CGTTTGGTTCTATTTTG-------------TTGGTTTCT------AGGACC-A--------- [454]
280 P.MICA AGCATGGAATAA---TAAGATAGGA-------------C-CTCGGTTCTATTTTG-------------TTGGTTTCT------AGAGCT-G--------- [449]
281 D.DISC AGCATGGTATGA---TGAAACATGA-------------CATTTTACGCTATTGGT-------------TTGCGTTTA------AAG-------------- [454]
282 T.BRUC AGCATCAGCCCTGGG-GCCACCGTTTCGGCTTTTGTTGGTTTTAGAAGTCCTTGGGAGATTATGGGGCCGCGTGCCTTGGGTCGGTGTT-TCGTGTCTCA [575]
283 E.GRAC GGCATCGACCAAGTGTGGCA----TTGGAGTTGTGCTGCCTTGGGGCCCACTCTGGACAACCTGGTGGTGTGTTCCTG----CAGGATC-AACAGGATCG [690]
284 Zea_mays AGCATGGGATAA---CATCATAGGA-------------T-TCCGGTCCTATTGTG-------------TTGGCCTTC------GGGATC-G--------- [455]
285 D._mobilis ---------------------------------------------------------------------------------------------------- [285]
286 S._solfataricus ---------------------------------------------------------------------------------------------------- [283]
287 T._tenax ---------------------------------------------------------------------------------------------------- [286]
288 M._vannielii ---------------------------------------------------------------------------------------------------- [286]
289 MB._formicicum ---------------------------------------------------------------------------------------------------- [288]
290 MS._hungatei ---------------------------------------------------------------------------------------------------- [261]
291 H._volacanii ---------------------------------------------------------------------------------------------------- [289]
292 HC._morrhuae ---------------------------------------------------------------------------------------------------- [290]
293 H.HALO ---------------------------------------------------------------------------------------------------- [289]
294 H._cutirubrum ---------------------------------------------------------------------------------------------------- [289]
295 AN._nidulans ---------------------------------------------------------------------------------------------------- [312]
296 HE.CHL ---------------------------------------------------------------------------------------------------- [296]
297 Bc._subtilis ---------------------------------------------------------------------------------------------------- [335]
298 MY.CAP ---------------------------------------------------------------------------------------------------- [331]
299 E._coli ---------------------------------------------------------------------------------------------------- [333]
300 MYX.XA ---------------------------------------------------------------------------------------------------- [332]
301 P.TEST ---------------------------------------------------------------------------------------------------- [334]
302 AG.TUM ---------------------------------------------------------------------------------------------------- [310]
303 DV.DES ---------------------------------------------------------------------------------------------------- [334]
304 BA.FRG ---------------------------------------------------------------------------------------------------- [331]
305 'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------------------------------- [310]
306 T.AMIT ---------------------------------------------------------------------------------------------------- [318]
308 [ 810 820 830 840 850 860 870 880 890 900]
309 [ . . . . . . . . . .]
311 Homo_sapiens -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [497]
312 Rattus_norvegicus -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [498]
313 Xenopus_laevis -------------------------GGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [493]
314 A._salina -------------------------AGGTAATGGTT----------------------------------------AACAGAGACAGACGGGGGCATTCG [494]
315 S._cerevisiae -------------------------TCGTAATGATT----------------------------------------AATAGGGACGGTCGGGGGCATCGG [489]
316 P.MICA -------------------------AGGTAATGATT----------------------------------------AATAGGGATAGTTGGGGGCATTCG [484]
317 D.DISC --------------------------TGTAATGATT----------------------------------------AATAGGGATGGATGGGGGTGTTCA [488]
318 T.BRUC TTTTTGTGGCGCGCACATTCGGCTCTTCGTGATGTTTTTTTACATTCATTGCGACGCGCGGCTTCCAGGAAT--GAAGGAGGGTAGTTCGGGGGAGAACG [673]
319 E.GRAC TTGCCCTGCCTGGCC--TTCGGGTCTCGTCAGGCTTCGTCCCCTGTCCCTGCAGCTTGCACCCATCGATCGTAAGTGATGGGACTGTTCGGGGTGAAAGA [788]
320 Zea_mays -------------------------GAGTAATGATT----------------------------------------AATAGGGACAGTCGGGGGCATTCG [490]
321 D._mobilis -------------------------------------------------------------------------------GGGGGTGGGAGAGGCCGAGGG [306]
322 S._solfataricus -------------------------------------------------------------------------------GGGGGCGGGAGAGGCGGGGGG [304]
323 T._tenax -------------------------------------------------------------------------------GGGGGCGGGAGAGGCCGCCGG [307]
324 M._vannielii -------------------------------------------------------------------------------GGGACCGGGAGAGGACAAGGG [307]
325 MB._formicicum -------------------------------------------------------------------------------GAGGCCGGGAGAGGTTAGCGG [309]
326 MS._hungatei -------------------------------------------------------------------------------GGGACCGGGAGAGGTGAGAGG [282]
327 H._volacanii -------------------------------------------------------------------------------GGGACCGGAAGGCTCGAGGGG [310]
328 HC._morrhuae -------------------------------------------------------------------------------GGGGCCGGGAGACCAGAGAGG [311]
329 H.HALO -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310]
330 H._cutirubrum -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310]
331 AN._nidulans -------------------------------------------------------------------------------GAGTATGGTAGGGGTAGCGGG [333]
332 HE.CHL -------------------------------------------------------------------------------GAGAGATGGAGAGGATAGCGG [317]
333 Bc._subtilis -------------------------------------------------------------------------------GAGTGCAGAAGAGGAGAGTGG [356]
334 MY.CAP -------------------------------------------------------------------------------GAATGCAAGAGAGGTAAGCGG [352]
335 E._coli -------------------------------------------------------------------------------GAGTCTCGTAGAGGGGGGTAG [354]
336 MYX.XA -------------------------------------------------------------------------------GAGTGCCGGA?AGGGTGGCGG [353]
337 P.TEST -------------------------------------------------------------------------------GAGTGCGGCAGAGGGGGATGG [355]
338 AG.TUM -------------------------------------------------------------------------------GAGTATGGAAGAGGTAAGTGG [331]
339 DV.DES -------------------------------------------------------------------------------GAATCCGGGAGAGGGTGGCGG [355]
340 BA.FRG -------------------------------------------------------------------------------GAGTACAGTAGAGGTGGGCGG [352]
341 'Zea_mays_(chloroplast)' -------------------------------------------------------------------------------GAGTACGGTAGGGGCAGAGGG [331]
342 T.AMIT -------------------------------------------------------------------------------GAGTGAGACAGAGGAGAGTGG [339]
344 [ 910 920 930 940 950 960 970 980 990 1000]
345 [ . . . . . . . . . .]
347 Homo_sapiens TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [595]
348 Rattus_norvegicus TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [596]
349 Xenopus_laevis TATTGTGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [591]
350 A._salina TACTGCGACGCTA--GAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAACAAGTTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTA [592]
351 S._cerevisiae TATT-CAATTGTC--GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTTGCCAAGGACGTTTTCGTTAATCAAGAACGAAAGTTG [586]
352 P.MICA TATT-TAACTGGTCAGAGGTGAAATTCTCGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCAAGAACGAAAGTTA [583]
353 D.DISC TATTGGTGGGCGA--GAGGTGAAATTCGTTGACCCTATCAAGATGAACTTCTGCGAAAGCATTCACCAAATACTTCCCCATTAATCAAGAACGAAAGTTT [586]
354 T.BRUC TACT-GGTGCGTCA-GAGGTGAAATTCTTAGACCGCACCAAGACGAACTACAGCGAAGGCATTCTTCAAGGATACCTTCCTCAATCAAGAACCAAAGTGT [771]
355 E.GRAC TACG-GGAGCGCCA-GAGGTGAAATTCTTAGATCGCTGCCAGATCCACTGCAGCGAAGGCGTTCTGCAAGTGCACGTCCGTCGATCAAGAATGAGAGTTC [886]
356 Zea_mays TATTTCATAGTCA--GAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTG [588]
357 D._mobilis TACTCCCGGGGTA--GGGGCGAAATCCTATAATCCCGGGAGGACCACCAGTGGCGAAGGCGCTCGGCTGGAACACGCCCGACGGTGAGGGGCGAAAGCCG [404]
358 S._solfataricus TACTCCCGGAGTA--GGGGCGAAATCCTTAGATACCGGGAGGACCACCAGTGGCGGAAGCGCCCCGCTAGAACGCGCCCGACGGTGAGAGGCGAAAGCCG [402]
359 T._tenax TACTCCGGGGGTA--GGGGCGAAATCCTATAATCCCCGGAGGACCACCAGTGGCGAAAGCGGGCGGCCAGAACGCGCCCGACGGTGAGGGGCGAAAGCCG [405]
360 M._vannielii TACTCCAGGGGTA--GCGGTGAAATGTGTTGATCCTTGGAGGACCACCTATGGCGAAGGCACTTGTCTGGAACGGGTCCGACGGTGAGGGACGAAAGCCA [405]
361 MB._formicicum TACTCCCGGGGTA--GGGGTGAAATCCTATAATCCCGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGGGCCTGACGGTGAGTAACGAAAGCCA [407]
362 MS._hungatei TACTGCCGGGGTA--GGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGCATCTCACCAGAACGGGTCCGACAGTGAGGGACGAAAGCTG [380]
363 H._volacanii TACGTCCGGGGTA--GGAGTGAAATCCCGTAATCCTGGACGGACCACCGATGGCGAAAGCACCTCGAGAAGACGGATCCGACGGTGAGGGACGAAAGCTA [408]
364 HC._morrhuae TACGTCCGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCACCGGTAGCGAAAGCGTCTCTGGAGAACGGACCCGACGGTGAGGGACGAAAGCTT [409]
365 H.HALO TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408]
366 H._cutirubrum TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408]
367 AN._nidulans AATTCCAGGTGTA--GCGGTGAAATGCGTAGATATCTGGAAGAACACCAGCGGCGAAAGCGCGCTACTGGGCCATAACTGACGCTCATGGACGAAAGCTA [431]
368 HE.CHL AATTCCCGGTGTA--GCGGTGAAATGCGTAGATATCGGGAGGAACACCCGTGGCGAAGGCGGCTATCTGGACATTATCTGACGCTGAGGCGCGAAAGCGT [415]
369 Bc._subtilis AATTCCACGTGTA--GCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGTAACTGACGCTGAGGAGCGAAAGCGT [454]
370 MY.CAP AATTCCATGTGTA--GCGGTGAAATGCGTAGATATATGGAAGAACACCTGTGGCGAAAGCGGCTTACTGGCTTGTTATTGACGCTGAGGCACGAAAGCGT [450]
371 E._coli AATTCCAGGTGTA--GCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGT [452]
372 MYX.XA AATTCCCCAAGTA--GAGGTGAAATTCGTAGATATGGGGAGGAACACCGGTGGCGAAGGCGGCCACCTGGACGGTAACTGACGCTGAGACGCGAAAGCGT [451]
373 P.TEST AATTCCGCGTGTA--GCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGT [453]
374 AG.TUM AATTCCGAGTGTA--GAGGTGAAATTCGTAGATATTCGGAGGAACGCCAGTGGCGAAGGCGGCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGT [429]
375 DV.DES AATTCCAGGTGTA--GGAGTGAAATCCGTAGATATCTGGAGGAACATCAGTGGCGAAGGCGGCCACCTGGACCGGTATTGACGCTGAGGTGCGAAAGCGT [453]
376 BA.FRG AATTCGTGGTGTA--GCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGT [450]
377 'Zea_mays_(chloroplast)' AATTTCCGGTGGA--GCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTA [429]
378 T.AMIT AATTTCGTGTGTA--GGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCAT [437]
380 [ 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100]
381 [ . . . . . . . . . .]
383 Homo_sapiens GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACCGGCG-------------ATGCGGCG------------------ [662]
384 Rattus_norvegicus GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTGGCG-------------ATGCGGCG------------------ [663]
385 Xenopus_laevis GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTAGCG-------------ATCCGGCG------------------ [658]
386 A._salina GAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTA--ACCATAAACGATGCCAACCAGCG-------------ATCCGCGG------------------ [659]
387 S._cerevisiae AGGGATCGAAGACGATCTGATACCGTCGTAGTCTTA--ACCATAAACTATGCCGACTAG---------------ATCGGGTG------------------ [651]
388 P.MICA GGGGATCGAAGACGATCAGATACCGTCCTAGTCTTA--ACCATAAACCATGCCGACTAG-------------AGATTGGAGG------------------ [650]
389 D.DISC GGGGATCGAAGACGATCAGATACCGTCGTAGTCCAA--ACTATAAACTATGTCGACCAGGG-------------ATCGGTTA------------------ [653]
390 T.BRUC GGGGATCAAAGATGATTAGAGACCATTGTAGTCCAC--ACTGCAAACCATGACACCCATGAATTGGGGAACATCATTGGGTGCCCGTGTGGCGGCCTTTT [869]
391 E.GRAC GGGGAGCAAAGATGATCAGACACCGTCGTAGTCCGGCCACTGTAAACGATGCCGGCCAGGCCTTGGCAGA-GCAA--GAATC------------------ [965]
392 Zea_mays GGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCA--ACCATAAACGATGCCGACCAGGG-------------AT-CAGCG------------------ [654]
393 D._mobilis GGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTTGGGTG------------------ [471]
394 S._solfataricus GGGCAGCAAACGGGATTAGATACCCCGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTCGAGTA------------------ [469]
395 T._tenax GGGGAGCAAAGGGGATTAGATACCCCTGTAGTCCCG--GCCGTAAACGATGCGGGCTAGCT-------------GTCGGCCG------------------ [472]
396 M._vannielii GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACTCTGCGAACTAGGT-------------GTCACCTG------------------ [472]
397 MB._formicicum GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACGATGTGGACTTGGT-------------GTTGGGAT------------------ [474]
398 MS._hungatei GGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCA--GCTGTAAACGATGCGCGTTAGGT-------------GTGTCAGT------------------ [447]
399 H._volacanii GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGCTCGCTAGGT-------------GTGACACA------------------ [475]
400 HC._morrhuae GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCAA--GCTGTAAACGATGCTCGCTAGGT-------------GTGGCGTT------------------ [476]
401 H.HALO GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475]
402 H._cutirubrum GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475]
403 AN._nidulans GGGGAGCGAAAGGGATTAGATACCCCTGTAGTCCTA--GCCGTAAACGATGAACACTAGGT-------------GTTGCG-T------------------ [497]
404 HE.CHL GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAGGT-------------GTTGGG-G------------------ [481]
405 Bc._subtilis GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAAGT-------------GTTAGG-G------------------ [520]
406 MY.CAP GGGGAGCAAATAGGATTAGATACCCTAGTAGTCCAC--GCCGTAAACGATGAGTACTAAGT-------------GTTGGG-G------------------ [516]
407 E._coli GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGTCGACTTGGA-------------GGTTGT-G------------------ [518]
408 MYX.XA GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGAACTAGGT-------------GTCGTG-G------------------ [517]
409 P.TEST GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCCTAAACGATGTCAACTGGTT-------------GTTGGG-T------------------ [519]
410 AG.TUM GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAATGTTAGCC-------------GTCGGG-C------------------ [495]
411 DV.DES GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCTGTAAACGATGGATGCTAGAT-------------GTCGGG-G------------------ [519]
412 BA.FRG GGGTATCAAACAGGATTAGATACCCTGGTAGTCCAC--ACAGTAAACGATGAATACTCGCT-------------GTTTGC-G------------------ [516]
413 'Zea_mays_(chloroplast)' GGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA--GCCGTAAACGATGGATACTAGGT-------------GCTGTG-C------------------ [495]
414 T.AMIT GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAT--GCCGTAAACGATG---------A-------------GTGTTC-G------------------ [494]
416 [ 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200]
417 [ . . . . . . . . . .]
419 Homo_sapiens -----------------------------------------------------------------------------------------------GCGTT [667]
420 Rattus_norvegicus -----------------------------------------------------------------------------------------------GCGTT [668]
421 Xenopus_laevis -----------------------------------------------------------------------------------------------GCGTT [663]
422 A._salina -----------------------------------------------------------------------------------------------ACGTT [664]
423 S._cerevisiae -----------------------------------------------------------------------------------------------GTGTT [656]
424 P.MICA -----------------------------------------------------------------------------------------------TCGTT [655]
425 D.DISC -----------------------------------------------------------------------------------------------AAATT [658]
426 T.BRUC GTGCCGACCCTCGGCCCCAATTTATTTATCAATTTACGTGCCTATTCTATCACCCCCGGTTCCCTCTTTTGAGGTTCTTCCGGGGTTTTTTACGGGAATA [969]
427 E.GRAC -----------------------------------------------------------------------------------------------CTAGA [970]
428 Zea_mays -----------------------------------------------------------------------------------------------GTGTT [659]
429 D._mobilis -----------------------------------------------------------------------------------------------GGCTT [476]
430 S._solfataricus -----------------------------------------------------------------------------------------------GGCTT [474]
431 T._tenax -----------------------------------------------------------------------------------------------GGCTT [477]
432 M._vannielii -----------------------------------------------------------------------------------------------GGCCT [477]
433 MB._formicicum -----------------------------------------------------------------------------------------------GGCTC [479]
434 MS._hungatei -----------------------------------------------------------------------------------------------GACCA [452]
435 H._volacanii -----------------------------------------------------------------------------------------------GGCTA [480]
436 HC._morrhuae -----------------------------------------------------------------------------------------------GGCTA [481]
437 H.HALO -----------------------------------------------------------------------------------------------GGCTA [480]
438 H._cutirubrum -----------------------------------------------------------------------------------------------GGCTA [480]
439 AN._nidulans -----------------------------------------------------------------------------------------------GAATC [502]
440 HE.CHL -----------------------------------------------------------------------------------------------GTATC [486]
441 Bc._subtilis -----------------------------------------------------------------------------------------------GGTTT [525]
442 MY.CAP -----------------------------------------------------------------------------------------------TAACT [521]
443 E._coli -----------------------------------------------------------------------------------------------CCCTT [523]
444 MYX.XA -----------------------------------------------------------------------------------------------GAGTT [522]
445 P.TEST -----------------------------------------------------------------------------------------------CTTAA [524]
446 AG.TUM -----------------------------------------------------------------------------------------------AGTAT [500]
447 DV.DES -----------------------------------------------------------------------------------------------AGTAT [524]
448 BA.FRG -----------------------------------------------------------------------------------------------ATATA [521]
449 'Zea_mays_(chloroplast)' -----------------------------------------------------------------------------------------------GACTC [500]
450 T.AMIT -----------------------------------------------------------------------------------------------CCCTT [499]
452 [ 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300]
453 [ . . . . . . . . . .]
455 Homo_sapiens ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [756]
456 Rattus_norvegicus ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [757]
457 Xenopus_laevis ATTCCCATG--ACCC-GCCGAGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [752]
458 A._salina ACTTGAATG--ACTC-CGCGGGCAGCTT----CCGGGAAA--CCA--AAGTGTTTGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [753]
459 S._cerevisiae TTTTTAATG--ACCC-ACTCGGTACCTT----ACGAGAAA--TCA--AAGTCTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [745]
460 P.MICA ATCTATACG--ACTC-CTTCAGCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [744]
461 D.DISC TTTTCAA-A--ATTT-AATCGGCACCTT----GTGAGAAA--TCAT-GAGTGTTTAGATTCCGGGGGGAGTATGGTCGCAAGTCTGAAACTTAAAGGAAT [747]
462 T.BRUC TCCTCAGCA--CGTT-TCTTACTTCTTC----ACGCGAAAGCTTG--GAGGTTACAGTCTCAGGGGGGAGTACGTTCGCAAGAGTGAAACTTAAAGAAAT [1060]
463 E.GRAC CTCTGTCAG--GGCC-ACTCCTCCCACA----ACGAGAAA-TCCA--CAGCCTGTGGGTTCAGGGGGGAGTACTGTCGCAAGGCTGAAACTTAAAGGAAT [1060]
464 Zea_mays ACTAATAGG--ACCCCGCTGGCCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAGGGCTAAAACTTAAAGGAAT [749]
465 D._mobilis ------AGA--GCCC-ACCCAGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAAT [556]
466 S._solfataricus ------AGA--GCCT-ACTCGGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [554]
467 T._tenax ------AGG--GCCC-GGCCGGTGGCGT----A-GGGAAA--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTTAAAGGAAT [557]
468 M._vannielii ------CGA--GCCC-AGGTGGTGCCGA----A-GGGAAG--CCGTTAAGTTCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [557]
469 MB._formicicum ------CGA--GCTG-CCCCAGTGCCGA----A-GGGAAG--CTGTTAAGTCCACCGCCT----GGGAAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [559]
470 MS._hungatei ------CGT--GTCA-CTGAGGTGCCGA----A-GGGAAA--CCGTGAAACGCGCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTTAAAGGAAT [532]
471 H._volacanii ------CGA--GCCT-GTGTTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [560]
472 HC._morrhuae ------CGA--GCCA-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [561]
473 H.HALO ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560]
474 H._cutirubrum ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560]
475 AN._nidulans ------GAC--CCGC---GCAGTGCCGT----A-GCCAAC--GCGTTAAGTGTTCCGCCT----GGGGAGTACGCACGCAAGTTGGAAACTCAAAGGAAT [580]
476 HE.CHL ------GAC--CCCC---CCGGTGCCGC----A-GTTCAC--GCAATAAGCACTCCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [564]
477 Bc._subtilis ------CCG--CCCC---TTAGTGCTGC----A-GCTAAC--GCATTAAGCACTCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAAT [603]
478 MY.CAP ------C-------------AGCGCTGC----A-GCTAAC--GCATTAAGTACTCCGCCT----GAGTAGTATGCTCGCAAGAGTGAAACTCAAAGGAAT [591]
479 E._coli ------GAG--GCG----TGGCTTCCGG----A-GCTAAC--GCGTTAAGTCGACCGCCT----GGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAAT [600]
480 MYX.XA ------GAC--CCCC---GCGGTGCCGA----A-GCTAAC--GCATTAAGTTCTCCGCCT----GGGAAGTACGGTCGCAAGACTAAAACTCAAAGGAAT [600]
481 P.TEST ------CTG--ACTC-----AGTAACGA----A-GCTAAC--GCGTGAAGTTGACCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [600]
482 AG.TUM --------A--CTGT---TCGGTGGCGC----A-GCTAAC--GCATTAAACATTCCGCCT----GGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAAT [576]
483 DV.DES ------TC------T---TCGGTGTCGT----A-GTTAAC--GCGTTAAGCATCCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTCAAAGAAAT [598]
484 BA.FRG ------CAG---------TAAGCGGCCA----A-GCGAAA--GCATTAAGTATTCCACCT----GGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAAT [595]
485 'Zea_mays_(chloroplast)' ------GAC--CCGT---GCAGTGCTGT----A-GCTAAC--GCGTTAAGTATCCCGCCT----GGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAAT [578]
486 T.AMIT ------GGTCTACG----CGGATCAGGGGCCCA-GCTAAC--GCGTGAAACACTCCGCCT----GGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAAT [582]
488 [ 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400]
489 [ . . . . . . . . . .]
491 Homo_sapiens TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [838]
492 Rattus_norvegicus TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [839]
493 Xenopus_laevis TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-A [834]
494 A._salina TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCAGGCCCGGACA----------------CTG-G-A [835]
495 S._cerevisiae TGACGGAAGGGCACCACTAGGAGTGGAGCCTGCGGCT-AATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACA----------------CAA-T-A [826]
496 P.MICA TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-T-A [826]
497 D.DISC TGACGGAAGGGCACACAATGGAGTGGAGCCTGCGGCTTAATTTGACTCAACTCGGGAAAACTTACCAAGCTAAGATA----------------TAG-T-A [829]
498 T.BRUC TGACGGAATGGCACCACAAGACGTGGAGCGTGCGGTTTAATTTGACTCAACACGGGGAACTTTACCAGATCCGGACA----------------GGG-T-G [1142]
499 E.GRAC TGACGGAATGGCACCACAAGGCGTGGAGTATGCGGCTTAATTTGACTCAACGCGGGGAATGTTACCAGGTCAGGACG----------------CAA-C-T [1142]
500 Zea_mays TGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-C-A [831]
501 D._mobilis TGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGTTCAATTGGAGTCAACGCCGGGAATCTCACCGGGGGA-GACA----------------GCA-G-G [637]
502 S._solfataricus TGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGGAGTCAACGCCTGGAATCTTACCGGGGGA-GACC----------------GCA-G-T [635]
503 T._tenax TGGCGGGGGGGCACCACAAGGGGTGAAGCTTGCGGCTTAATTGGAGTCAACGCCGGAAACCTTACCCGGGGC-GACA----------------GCA-G-G [638]
504 M._vannielii TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGGCATCTCACCAGGAGC-GACA----------------GCA-T-G [638]
505 MB._formicicum TGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGACATCTCACCAGGGGC-GACA----------------GCA-G-A [640]
506 MS._hungatei TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGGACTCAACGCCGGAAATCTCACCGGATAA-GACA----------------GCT-G-A [613]
507 H._volacanii TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCTCC-GACT----------------ACA-GTG [642]
508 HC._morrhuae TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCTCCGGCACC-GACA----------------GTGTGCA [644]
509 H.HALO TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642]
510 H._cutirubrum TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642]
511 AN._nidulans TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT-----CC----CCCGAAT-C-T [668]
512 HE.CHL TGACGGGGGCCCGC-ACAAGCGTTGGAGCATGTGGTTTAATTCGACGCAACGCGAAGAACCTTACCAAGGCTTGACAT-----CC----TCTGAAT-C-C [652]
513 Bc._subtilis TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACAT-----CC----TCTGACA-A-T [691]
514 MY.CAP TGACGGGGACCCGC-ACAAGTGGTGGAGCATGTGGTTTAATTCGAAGCAACACGAAGAACCTTACCAGGGCTTGACAT-----CC----AGTGTAA-A-G [679]
515 E._coli TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACAT-----CC----ACGGAAG-T-T [688]
516 MYX.XA TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGACGCAACGCGCAGAACCTTACCTGGTCTTGACAT-----CC----TCAGAAT-C-C [688]
517 P.TEST TGACGGGGACCCGC-ACAAGCGGTGGATGATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACAT-----GG----CAGGAAC-T-T [688]
518 AG.TUM TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCTCTTGACAT-----TCGGGGTTTGGGC-A-G [668]
519 DV.DES TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTAGGTTTGACAT-----CC---ACGGAACC-C-T [687]
520 BA.FRG TGACGGGGGCCCGC-ACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTAAATT-----GC----AGTGGAA-T-G [683]
521 'Zea_mays_(chloroplast)' TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAGGCGAAGAACCTTACCAGGGCTTGACAT-----GC----CGCGAAT-C-C [666]
522 T.AMIT TGACGGGGGCCTGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACA----ACAAAAC-C-T [675]
524 [ 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500]
525 [ . . . . . . . . . .]
527 Homo_sapiens AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [928]
528 Rattus_norvegicus AG-GATTGACA--G-GTTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [929]
529 Xenopus_laevis AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--TGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [924]
530 A._salina AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTC--AGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [925]
531 S._cerevisiae AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTT--TGTGGGTGGTGGTGCATGGCCGTTTCTCAGTTGGTGGAGTGATTTGTCTGCTTAATTG [917]
532 P.MICA AG-GATTGACA--G-ATTGA--TAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGTGATTTGTCTGGTTAATTC [916]
533 D.DISC AG-GATTGACA--G-ACTAA--AAGATCTTTCAT-GATTC--TATAAGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTCAATTC [919]
534 T.BRUC AG-GATTGACA--G-ATGGA--GTGTTCTTTCTC-GATCC--CCTGAATGGTGGTGCATGGCCGCTTTT-GGTCGGTGGAGTGATTTGTTTGGTTGATTC [1232]
535 E.GRAC GG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATCT--TGTGGACGGTGGTGCATGGCCGCTCCTGA-TTGGTGGAGTGATTTGTCTGGTTGATTC [1232]
536 Zea_mays AG-GATTGACA--G-ACTGA--GAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [921]
537 D._mobilis AT-GACGGCCA--G-GTTAA--AG-C-CTTGCCT-GACGC--GCTGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGCTGTGAAGTGTCCGGTTAAGTC [725]
538 S._solfataricus AT-GACGGCCA--G-GCTAA--CGAC-CTTGCCT-GACTC--GCGGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTC [724]
539 T._tenax AT-GAAGGCCA--G-GCTAA--CGAC-CTTGCCG-GACGA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGCTCGTGCCGTGAGGTGTCCGGTTAAGTC [727]
540 M._vannielii AT-GACGGCCA--G-GTTGA--CGAC-CTTGCCT-GAAGC--GCTGAGAGGTGGTGCATGGCCATC-GTCAGCTCGTACCGCGAGGCGTCCTGTTAAGTC [727]
541 MB._formicicum AT-GATAGCCA--G-GTTGA--TGAC-CTTGCTT-GACAA--GCTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [729]
542 MS._hungatei AT-GATAGTCG--G-GATGA--AGAC-TCTACTT-GACTA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGTTCGTACTGTGAAGCATCCTGTTTAGTC [702]
543 H._volacanii AT-GACGATCA--G-GTTGA--TGAC-CTTATCA-CGACGCTGTAGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733]
544 HC._morrhuae GT-GACAGTCA--G-TCCGA--TGGG-CTTACTT-GA--GCCACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733]
545 H.HALO AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-G-AGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [732]
546 H._cutirubrum AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-GGAGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733]
547 AN._nidulans CT-TGGAAACG--A-GAGAG--TGCC-TTCGGGA-GCGGG--G-AGACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756]
548 HE.CHL GA-TAGAGATA--GCGGAGT--GCCC-TTCGGGGAGCAGA--G-AGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [742]
549 Bc._subtilis CC-TAGAGATA--G-GACGT--CCCC-TTCGGGG-GCAGA--G-TGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [779]
550 MY.CAP CTATAGAGATA--T-AGTAG--AGGT-T-----A-ACATT--G-AGACAGGTGGTGCATGGTTGTC-GTCAGTTCGTGCCGTGAGGTGTTGGGTTAAGTC [763]
551 E._coli TT-CAGAGATG--A-GAATG--TGCC-TTCGGGA-ACCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTC [776]
552 MYX.XA TT-CAGAGATGAGG-GAGTG--CCCG-CAAGGGA-ACTGA--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778]
553 P.TEST AC-CAGAGATG--G-TTTGGTGCTCG-AAAGAGA-ACCTG--C-ACACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778]
554 AG.TUM TG-GAGACATT--G-TCCTT--CAGT-TAGGCTG-GCCCC--A-GAACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756]
555 DV.DES CC-CGAAAAGG--A-GGGGT--GCCC-TTCGGGGAGCCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [776]
556 BA.FRG ATGTGGAAACA--T-GTCAG--TGAG-CAATCAC--CGCT--G-TGA-AGGTGCTGCATGGTTGTC-GTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTG [770]
557 'Zea_mays_(chloroplast)' TC-TTGAAAGA--G-AGGGG--TGCC-CTCGGGA-ACGCG--G-ACACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTC [754]
558 T.AMIT GT-CCTTAACA--G-GATGG--TACT-------G-ACTTT--C-ATACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTC [757]
560 [ 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600]
561 [ . . . . . . . . . .]
563 Homo_sapiens CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CCCG [975]
564 Rattus_norvegicus CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-G [975]
565 Xenopus_laevis CGATAACGAACGAGACTCCTCCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-C [970]
566 A._salina CGATAACGAACGAGACTCTAGCCTGCTAA-ATAG-A-CG--ATGGATC--------------------------------C-TAGT----------GG-T [976]
567 S._cerevisiae CGATAACGAACGAGACCTTAACCTACTAA-ATAGTG-GT--G--------------------------------------C-TAGC----------AT-T [963]
568 P.MICA CGTTAACGAACGAGACCTTAACCTGCTAA-ATAGTT-AC--A--------------------------------------CGTAAC----------TC-C [963]
569 D.DISC CGATAACGGACGAGACCTCGACCTGCTAA-CTAGTA-GT--ATTTATTAGTCGATATAGACGATAGCTTTTCTGGGGTTTG-GAAT----------GA-T [1003]
570 T.BRUC CGTCAACGGACGAGATCC-AAGCTGCCCA-GTAG---GT--G--------------------------------------C-CGGG----------AT-T [1275]
571 E.GRAC CGATAACGAGTGAGACATCTGCCTCCCACTAGCCTG-AG--G--------------------------------------C-TCGC----------AT-T [1279]
572 Zea_mays CGTTAACGAACGAGACCTCAGCCTGCTAA-CTAGCT-AT--G--------------------------------------C-GGAG----------CC-A [967]
573 D._mobilis CGGAAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------GGG----------GC-T [768]
574 S._solfataricus CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGGTA-TT--C-----------------------------------------TGG----------AC-T [767]
575 T._tenax CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------CGC----------TC-T [770]
576 M._vannielii AGGTAACGAGCGAGACCCGTGCCC-TATG-TTGCGA-CT--A-----------------------------------------CTT----------TC-T [770]
577 MB._formicicum AGGCAACGAGCGAGACCCACGCCC-TTAG-TTACCA-GC--G-----------------------------------------GAT----------CC-T [772]
578 MS._hungatei AGGCAACGAGCGAGACCCACGCGA-GCAG-TTGCCAGCT--T-----------------------------------------GAC----------CT-T [746]
579 H._volacanii AGGCAACGAGCGAGACCCGCACTT-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------T--T [777]
580 HC._morrhuae AGGCAACGAGCGAGACCCGCGTCC-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------CC-T [778]
581 H.HALO AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCGGT-----------------------------------------TAC----------CC-T [777]
582 H._cutirubrum AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCAGT-----------------------------------------TAC----------CC-T [778]
583 AN._nidulans CCGCAACGAGCGCAACCCACGTTT-TTAG-TTGCCA-TC--A-----------------------------------------TTC----------AG-T [799]
584 HE.CHL CCGCAACGAGCGCAACCCTTATCC-CTAG-TTGCCA-GCG-A-----------------------------------------GAG----------AG-T [786]
585 Bc._subtilis CCGCAACGAGCGCAACCCTTGATC-TTAG-TTGCCA-GC--A-----------------------------------------TTC----------AG-T [822]
586 MY.CAP CCGCAACGAACGCAACCCTTGTCG-TTAG-TTACTA-AC--A-----------------------------------------TTA----------AG-T [806]
587 E._coli CCGCAACGAGCGCAACCCTTATCC-TTTG-TTGCCA-GC--G-G---------------------------------------TCC----------GG-C [820]
588 MYX.XA CCGCAACGAGCGCAACCCTCGCCT-TTAG-TTGCCA-----------------------------------------------CGC----------AA-G [818]
589 P.TEST CCGCAACGAGCGCAACCCTTGCCA-TTAG-TTGCTA--C--A-----------------------------------------TTC----------AG-T [820]
590 AG.TUM CCGCAACGAGCGCAACCCTCGCCC-TTAG-TTGCCA-GC--A-----------------------------------------TTT----------AG-T [799]
591 DV.DES CCGCAACGAGCGCAACCCCTATGG-ATAG-TTGCCA-GC--AAG---------------------------------------TAA----------TG-T [821]
592 BA.FRG CCATAACGAGCGCAACCCTTATCT-TTAG-TTACTA-AC--AGG---------------------------------------TTA----------TG-C [815]
593 'Zea_mays_(chloroplast)' TCGCAACGAGCGCAACCCTCGTGT-TTAG-TTGCCA-CT--A------------------------------------------TG----------AG-T [796]
594 T.AMIT CTATAACGAGCGAAACCCTCGTTT-TGTG-TTGCTG-AG--A-C---------------------------------------ATGCGC????GTGCG-T [811]
596 [ 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700]
597 [ . . . . . . . . . .]
599 Homo_sapiens AGCGGTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992]
600 Rattus_norvegicus AGCGCTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992]
601 Xenopus_laevis GGCGGTCGGCGT---------------------------------------------------------------------------CCA---------- [985]
602 A._salina GG-----ATCGC---------------------------------------------------------------------------T------------ [984]
603 S._cerevisiae TG---CTGGTTA---------------------------------------------------------------------------TCC---------- [975]
604 P.MICA GG---TTACGTG---------------------------------------------------------------------------GGC---------- [975]
605 D.DISC TTCGGTCATCTC---------------------------------------------------------------------------CTGCTTCAAGGAG [1028]
606 T.BRUC GT---CCACACA----------GGACAGCAGTCCCTCCGGC-----GGGGATTTTTTCCCCAACG-GTGGTCGTCATCCTTCTTTTTACA---------- [1346]
607 E.GRAC TG---GTAGGGTTCGGCTGCTCGG-TGGCAGCCCC-CTGGCAACAGGGGGAGATGTACCGGTGCATGCTCCCGAGAGCCTCCAGT--TCA---------- [1362]
608 Zea_mays TC---CCGCTAG---------------------------------------------------------------------------TTA---------- [979]
609 D._mobilis AC---GGCTCCG---------------------------------------------------------------------------GGG---------- [780]
610 S._solfataricus CC---CGGTCCA---------------------------------------------------------------------------GAA---------- [779]
611 T._tenax TC---GGGGCGG---------------------------------------------------------------------------GGG---------- [782]
612 M._vannielii CC---GGAA-GG---------------------------------------------------------------------------TAA---------- [781]
613 MB._formicicum TC---GGGATGC---------------------------------------------------------------------------CGG---------- [784]
614 MS._hungatei CG---GGTT-GA---------------------------------------------------------------------------TGG---------- [757]
615 H._volacanii TC---GACTGGC---------------------------------------------------------------------------TGG---------- [789]
616 HC._morrhuae TG---TGCTGGC---------------------------------------------------------------------------TGG---------- [790]
617 H.HALO TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [789]
618 H._cutirubrum TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [790]
619 AN._nidulans T---------------------------------------------------------------------------------------GG---------- [802]
620 HE.CHL C---------------------------------------------------------------------------------------GG---------- [789]
621 Bc._subtilis T---------------------------------------------------------------------------------------GG---------- [825]
622 MY.CAP T---------------------------------------------------------------------------------------GA---------- [809]
623 E._coli C---------------------------------------------------------------------------------------GG---------- [823]
624 MYX.XA T---------------------------------------------------------------------------------------GG---------- [821]
625 P.TEST T---------------------------------------------------------------------------------------GA---------- [823]
626 AG.TUM T---------------------------------------------------------------------------------------GG---------- [802]
627 DV.DES T---------------------------------------------------------------------------------------GG---------- [824]
628 BA.FRG T---------------------------------------------------------------------------------------GA---------- [818]
629 'Zea_mays_(chloroplast)' T---------------------------------------------------------------------------------------TG---------- [799]
630 T.AMIT G---------------------------------------------------------------------------------------CC---------- [814]
632 [ 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800]
633 [ . . . . . . . . . .]
635 Homo_sapiens -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CCCGAGATTGA-GCAATAACAGG [1046]
636 Rattus_norvegicus -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CC-GAGATTGA-GCAATAACAGG [1045]
637 Xenopus_laevis --------------------------------A----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA--CAC-GAGATCGA-GCAATAACAGG [1038]
638 A._salina -------------------------------------CTTCTTAGAGGGACAAG---TGG--CG-TC-TAGCCA--TAT-GAGAGTGA-GCAATAACAGG [1036]
639 S._cerevisiae --------------------------------A----CTTCTTAGAGGGACTAT---CGG--TT-TC-AAGCCG-ATGG-AAGTTTGAGGCAATAACAGG [1030]
640 P.MICA --------------------------------A----ACTTTTAGAGGGACTTT---GCG--TG-TC-TAACGC-AAGG-AAGTTTGAGGCAATAACAGG [1030]
641 D.DISC TGTGTAGTCTGACTCGATAGGTACGAATTAAAA----CTTCTTAGAGGGACTAC---CTG--CC-TC-AAGCAG-GCGG-AAGTCCGAGGCAATAACAGG [1115]
642 T.BRUC --------------------------------GGCCCCTTCTCTGCGGGATTCC---TTGCTTT-TC-GCGCAA-GGTG-AGATTTTGGGCAACAGCAGG [1407]
643 E.GRAC --------------------------------G----CTTCTCTGAGGTGCTGTGTCCGC--CA-CA-AAGGGC-ATGC-ATGCTAGAGCCAACAGCAGG [1420]
644 Zea_mays --------------------------------G----CTTCTTAGAGGGACTAT---GGC--CG-TT-TAGGCC-G-CG-AAGTTTGAGGCAATAACAGG [1033]
645 D._mobilis -------------------------------------CACACTAGGGGGACTGC---CGC--CG-TTTAAGGCG-GAGG-AAGGAGGGGGCCACGGCAGG [835]
646 S._solfataricus --------------------------------C----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCCACGGCAGG [833]
647 T._tenax --------------------------------G----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCGACGGCAGG [836]
648 M._vannielii --------------------------------G----CACTCATAGGGGACCGC---TAG--CGCT--AAGCTA-GAGG-AAGGAGCGGGCAACGATAGG [836]
649 MB._formicicum --------------------------------G----CACACTAAGGGGACCGC---CAG--TGAT--AAACTG-GAGG-AAGGAGTGGACGACGGTAGG [839]
650 MS._hungatei --------------------------------G----GACACTGCTCGGACCGC---CTC--TGCT--AAAGGG-GAGG-AAGGAATGGGCAACGGTAGG [812]
651 H._volacanii --------------------------------G----TACATTAGAAGGACTGC---CGC--TG-CT-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844]
652 HC._morrhuae --------------------------------G----TACATTAGGGAGACTGC---CGT--CG-CT-AAGACG-GAGG-AAGGAACGGGCAACGGTAGG [845]
653 H.HALO --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844]
654 H._cutirubrum --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [845]
655 AN._nidulans --------------------------------G----CACTCTAGAGAAACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGTGGACGACGTCAAG [857]
656 HE.CHL --------------------------------G----GACTCTAGGGAGACTGC---CCG--GGAC--GACCGG-GAGG-AAGGCGGGGATGACGTCAAA [844]
657 Bc._subtilis --------------------------------G----CACTCTAAGGTGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAA [880]
658 MY.CAP --------------------------------G----AACTCTAACGAGACTGC---TAG--TG-T--AAGCTA-GAGG-AAGGTGGGGATGACGTCAAA [863]
659 E._coli --------------------------------G----AACTCAAAGGAGACTGC---CAG--TGAT--AAACTG-GAGG-AAGGTGGGGATGACGTCAAG [878]
660 MYX.XA --------------------------------A----T-CTCTAGAGGGACTGC---CGG--TGTT--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [875]
661 P.TEST --------------------------------G----CACTCTAATGGGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [878]
662 AG.TUM --------------------------------G----CACTCTAAGGGGACTGC---CGG--TGAT--AAGCCGAGAGG-AAGGTGGGGATGACGTCAAG [858]
663 DV.DES --------------------------------G----CACTCTATTCAGACTGC---CCG--GGTT--AACCGG-GAGG-AAGGTGGGGACGACGTCAAG [879]
664 BA.FRG --------------------------------G----GACTCTAGAGAGACTGC---CGT--CGTA--AGATGT-GAGG-AAGGTGGGGATGACGTCAAA [873]
665 'Zea_mays_(chloroplast)' --------------------------------G----AACCCTGAACAGACCGC---CGG--TGTT--AAGCCG-GAGG-AAGGAGAGGATGAGGCCAAG [854]
666 T.AMIT --------------------------------G----CACTCACGAGGGACTGC---CAG--TGAG--ATACTG-GAGG-AAGGTGGGGATGACGTCAAG [869]
668 [ 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900]
669 [ . . . . . . . . . .]
671 Homo_sapiens TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1120]
672 Rattus_norvegicus TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1119]
673 Xenopus_laevis TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTG-TGTCTA------------------------CCCTGCGCC [1112]
674 A._salina TCTGTGATGCCCTTAGA-TGTCCTGGGCCGCACGCGCGCTACACTGGAAGAATCAGCGCG-T--CC-------------------------TCCCTGTCC [1107]
675 S._cerevisiae TCTGTGATGCCCTTAGAACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAG-T--CTA------------------------ACCTTGGCC [1103]
676 P.MICA TCTGTGATGCCCTTAGA-TGTTCTGGGCTGCACGCGCGCTACACTGATGCGTTCAACGAG-T--TTA----------------------TGCACTTGCCC [1104]
677 D.DISC TCTGTGATGCCCTTAGA-TACCTTGGGCCGCACGCGCGCTACAATGTAGGAAACAAAAAG-G--CT--------------------------CCTGGTCC [1185]
678 T.BRUC TCTGTGATGCTCCTCAA-TGTTCTGGGCGACACGCGCACTACAATGTCAGTGAGAACAAG-AGTCCGAGCGGCACTTCACAATGTCGCTCCCGCTTGATC [1505]
679 E.GRAC TCTGTGATGCTCCCAGA-TGTCCTGGGCCGCACGCGCACTACATTGTCACAGTGAAGGTG-T--CGA-------CATGCCCACTCCGGTGGGCCCTGGCC [1509]
680 Zea_mays TCTGTGATGCCCTTAGA-TGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAG-TATATA------------------------GCCTTGGCC [1107]
681 D._mobilis TCAGC-ATGCCCCGAAC--CCCCCGGGCTACACGCGGGCTACAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [902]
682 S._solfataricus TCAGC-ATGCCCCGAAA--CTCCCGGGCCGCACGCGGGTTACAATGGCAGGGACAACGGGAT--GCT------------------------ACC----TC [900]
683 T._tenax TCAGT-ATGCCCCGAAA--CCCCGGGGCTGCACGCGAGCTGCAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [903]
684 M._vannielii TCCGC-ATGCCCCGAAT--CTCCTGGGCTACACGCGGGCTACAATGGCTAGGACAATGGGCT--GCT------------------------ACC----CT [903]
685 MB._formicicum TCCGT-ATGCCCCGAAT--CCCCTGGGCTACACGCGGGCTACAATGGTTAGGACAATGGGTT--CCG------------------------ACA----CT [906]
686 MS._hungatei TCAGC-ATGCCCCGAAT--TATCCGGGCTACACGCGGGCTACAATGGACAGGACAATGGGTT--TCG------------------------ACA----CC [879]
687 H._volacanii TCAGT-ATGCCCCGAAT--GAGCTGGGCTACACGCGGGCTACAATGGTCGAGACAATGGGTT--GCT------------------------ATC----TC [911]
688 HC._morrhuae TCAGT-ATGCCCCGAAT--GTGCCGGGCGACACGCGGGCTACAATGGCCGAGACAGTGGGAC--GCT------------------------ACC----CC [912]
689 H.HALO TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [911]
690 H._cutirubrum TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [912]
691 AN._nidulans TCATC-ATGCCCCTTAC--ATCCTGGGCTACACACGTACTACAATGCTCCGGACAGCGAGAC--GCG------------------------AAG----CC [924]
692 HE.CHL TCATC-ATGCCCCTTAT--GTCTTGGGCTACACACGTGCTACAATGGGCGGTACAAACCGAA--GCG------------------------AAG----CC [911]
693 Bc._subtilis TCATC-ATGCCCCTTAT--GACCTGGGCTACACACGTGCTACAATGGACAGAACAAAGGGCA--GCG------------------------AAA----CC [947]
694 MY.CAP TCATC-ATGCCCCTTAT--GTCCTGGGCTACACACGTGCTACAATGGCTGGTACAAAGAGTT--GCA------------------------ATC----CT [930]
695 E._coli TCATC-ATGGCCCTTAC--GACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAA--GCG------------------------ACC----TC [945]
696 MYX.XA TCCTC-ATGGCCTTTAT--GACCAGGGCTACACACGTGCTACAATGGCCGGTACAGAGCGTT--GCC------------------------AAC----CC [942]
697 P.TEST TCCTC-ATGGCCCTTAT--AGGTGGGGCTACACACGTCATACAATGGCTGGTACAAAGGGTT--GCC------------------------AAC----CC [945]
698 AG.TUM TCCTC-ATGGCCCTTAC--GGGCTGGGCTACACACGTGCTACAATGGTGGTGACAGTGGGCA--GCG------------------------AGA----CA [925]
699 DV.DES TCATC-ATGGCCCTTAC--GCCTAGGGCTACACACGTACTACAATGGCGCGCACAAAGGGGA--GCG------------------------AGA----CC [946]
700 BA.FRG TCAGC-ACGGCCCTTAC--GTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAAGGCA--GCT------------------------AGC----GG [940]
701 'Zea_mays_(chloroplast)' TCATC-ATGCCCCTTAT--GCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTC--GCG------------------------ATC----TC [921]
702 T.AMIT TCCGC-ATGGCCCTTAT--GGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAA--GCA------------------------AGG----CT [936]
704 [ 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000]
705 [ . . . . . . . . . .]
707 Homo_sapiens -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1216]
708 Rattus_norvegicus -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1215]
709 Xenopus_laevis -GACAGGTGCGGG-TAACCCGCTGAA-CCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1208]
710 A._salina -GAGAGGACCGGG-TAACC-GCTGAA-CCTCTTCCGTGGTTGGGATTGGGGACTGCAAGGATC-CCCAT-GAACCAGGAATCCCTAGTAGGCGCAAGTCA [1201]
711 S._cerevisiae -GAGAGGTCTTGG-TAATCTTGTGAA-ACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTT-CAACGAGGAATTCCTAGTAAGCGCAAGTCA [1199]
712 P.MICA -GATAGGGTTTGGGTAATCTTTTTAA-ATCGCATCGTGATGGGGATAGATTATTGCAATTATTAATCTT-CAACGAGGAATTCCTAGTAAGCGCGAGTCA [1201]
713 D.DISC -GGAAGGATTGGG-TAATCATTTGAA-TTTCCTACGTAACTGGGCTTGATCTTTGTAATTATTGATCAT-AAACGAGGAATTCCTTGTAAGCGTAAGTCA [1281]
714 T.BRUC -AAAAGAGCGGGG-AAACCACGGAATCACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACGAGGAATGTCTCGTAGGCGCAGCTCA [1603]
715 E.GRAC TGAAGAGGCTGGG-AAATCCTGCAAG-CCTGTGACGTACTGGGGATAGATGGTTGCAACTGTCTGCCTT-GAACGTGGAATGCCTAGTATGCCTGGGTCA [1606]
716 Zea_mays -GACAGGC-CGGT-AATCTTGGGAAA-TTTCATGCGTGATGGGGATAGATCATTGCAATTGTTGGTCTT-CAACGAGGAATGCCTAGTAAGCGCGAGTCA [1202]
717 D._mobilis -GAAAGGGGAGGC-GAATCCCTC-AA-ACCCCGCCGTGGTTGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGCGTCA [997]
718 S._solfataricus -GAAAGGGGGAGC-CAATCCTT--AA-ACCCTGCCGCAGTTGGGATCGAGGGCTGAAACCCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGGGTCA [994]
719 T._tenax -GAAAGGGGGAGG-CAATCCCGT-AA-ACCCCGCCCCAGTAGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGTGGAATCCCTAGTAACCGCGTGTCA [998]
720 M._vannielii -GAAAAGGGACGC-GAATCTCCG-AA-ACCTAGTCGTAGTTCGGATCGTGGGCTGTAACTCGCCCACGT-GAAGCTGGAATCCGTAGTAATCGCAGTTCA [998]
721 MB._formicicum -GAAAGGTGGAGG-TAATCTCCT-AA-ACCTGGCCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCAT-GAAGCTGGAATGCGTAGTAATCGCGTGTCA [1001]
722 MS._hungatei -GAGAGGTGAGGA-TAATCTCCT-AA-ACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCAT-GAAGCTGGAATCCGTAGTAATCGCGTTTCA [974]
723 H._volacanii -GAAAGAGAACGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1006]
724 HC._morrhuae -GAGAGGGGACGC-TAATCTCCT-AA-CCTCGGTCGTAGTTCGGATTGCGGGTTGAAACCCACCCGCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1007]
725 H.HALO -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1006]
726 H._cutirubrum -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1007]
727 AN._nidulans -GCGAGGTGAAGC-AAATCTCCC-AA-ACCGGGGCTCAGTTCAGATTGCAGGCTGCAACTCGCCTGCAT-GAAGGCGGAATCGCTAGTAATCGCAGGTCA [1019]
728 HE.CHL -GAGAGGTGGAGC-GAACCGGAG-AA-AGCCGTTCCCAGTTCGGATTGCTCTCTGCAACTCGAGAGCAT-GAAGGCGGAATCGCTAGTAATCGCGGGTCA [1006]
729 Bc._subtilis -GCGAGGTTAAGC-CAATCCCAC-AA-ATCTGTTCTCAGTTCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGCTGGAATCGCTAGTAATCGCGGATCA [1042]
730 MY.CAP -GTGAAGGGGAGC-TAATCTCAA-AA-AACCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT-GAAGCCGGAATCACTAGTAATCGCGAATCA [1025]
731 E._coli -GCGAGAGCAAGC-GGACCTCAT-AA-AGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCAT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040]
732 MYX.XA -GCGAGGGGGAGC-TAATCGCAT-AA-AACCGGTCTCAGTTCAGATTGGAGTCTGCAACTCGACTCCAT-GAAGGAGGAATCGCTAGTAATCGCAGATCA [1037]
733 P.TEST -GCGAGGGGGAGC-TAATCCCAT-AA-AGCCAGTCGTAGTCCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040]
734 AG.TUM -GCGATGTCGAGC-TAATCTCCA-AA-AGCCAT-CTCAGTTCGGATTGCACTCTGCAACTCGAGTGCAT-GAAGTTGGAATCGCTAGTAATCGCAGATCA [1019]
735 DV.DES -GCGAGGTGGAGC-CAATCCCAA-AA-AACGCGTCCCAGTCCGGATTGCAGTCTGCAACTCGACTGCAT-GAAGTTGGAATCGCTAGTAATTCGAGATCA [1041]
736 BA.FRG -GTGACCGTATGC-TAATCCCA--AA-ATCCTCTCTCAGTTCGGATCGAAGTCTGCAACCCGACTTCGT-GAAGCTGGATTCGCTAGTAATCGCGCATCA [1034]
737 'Zea_mays_(chloroplast)' -GCGAGGGTGAGC-TAACTCCAA-AA-ACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCAT-GAAGCAGGAATCGCTAGTAATCGCCGGTCA [1016]
738 T.AMIT -GTAAGGCGGAGC-GAATC-CGG-AA-AGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACAT-GAAGTTGAAATCGCTAGTAATCGCGGATCA [1030]
740 [ 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100]
741 [ . . . . . . . . . .]
743 Homo_sapiens TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1315]
744 Rattus_norvegicus TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1314]
745 Xenopus_laevis TA-AGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1307]
746 A._salina TT-AGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGATTTAGCTTGATCCTTTAGAGGAAGTAAAAGTCG [1300]
747 S._cerevisiae TC-AGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGCTTGGTCATTTGGAGGAACTAAAAGTCG [1298]
748 P.MICA TC-AGCTCGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAGTG-----ACCTTATCACTTAGAGGAAGGAGAAGTCG [1295]
749 D.DISC TT-ACCTTATGCTGAATATGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATCGAATGATACGGTCTCATTGTTTAGAGGAAGGAGAAGTCG [1380]
750 T.BRUC TC-AAACTGTGCCGATTACGTCCCTGCCATTTGTACACACCGCCCGTCGTTGTTTCCGAT--GATGGTGCAAATTGCTTCAATAGAGGAAGCAAAAGTCG [1700]
751 E.GRAC TC-AGCCCAGACCGATTGTGTCCCTGCCATTTGTACACACCGCCCGTCGTTGCTACCGATGG--TGGCTGGAGTCCAGCCACTAGAGGAAGCAAAAGTCG [1703]
752 Zea_mays TC-AGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGCCTTATCATTTAGAGGAAGGAGAAGTCG [1301]
753 D._mobilis AC-ATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGGGGAGG-GGGAGCTCCCCCTCCCTGAGGGGGGAGAAGTCG [1095]
754 S._solfataricus AC-AACCCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGCGCGAA-AGGGGCTCCTTTCCCGCGAGGGGGGAGAAGTCG [1092]
755 T._tenax CC-AACGCGCGGTGAATACGTCCCTGCCCCTTGCACACACCGCCCGTCGCACCACCCGAGGGAGTT-CTCTGCAGAGAACTCCCGAGGGGGGTGAAGTCG [1096]
756 M._vannielii TA-ATACTGCGGTGAATGTGTCCCTGCTCCTTGCACACACCGCCCGTCACACCACCCGAGTTGGGT-TCAGGCCTGGGCTCAGCGAGGGGGGTGAAGTCG [1096]
757 MB._formicicum TA-ACCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGT-TTGGATCTAGGTTCTTTGAGGAGGGCGAAGTCG [1099]
758 MS._hungatei AC-ATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGAGGT-CTTGATCTGGGTTTTGCAAGGGGGGTTAAGTCG [1072]
759 H._volacanii AT-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGCTTAAGTCG [1097]
760 HC._morrhuae GA-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGATTAAGTCG [1098]
761 H.HALO GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1097]
762 H._cutirubrum GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1098]
763 AN._nidulans GC-ATACTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGTTGGCC-ATGCCGGTAGGGCTGATGACTGGGGTGAAGTCG [1117]
764 HE.CHL GC-ATACCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGCA-ACACCGGTGGGGTCGATGATTGGGGTGAAGTCG [1104]
765 Bc._subtilis GC-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTA-ACACCGGTGGGACAGATGATTGGGGTGAAGTCG [1140]
766 MY.CAP GCTATGTCGCGGTGAATACGTTCTCGGGTCTTGTACACACCGCCCGTCACACCATGAGAGTTGGTA-ATACCGGTAGGACTAGCGATTGGGGTGAAGTCG [1124]
767 E._coli GA-ATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTT-GCAAATTTGTGATTCATGACTGGGGTGAAGTCG [1138]
768 MYX.XA GC-ACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTCGATT-GCTCCGGAGTGGTCGGTAACTGGGGTGAAGTCG [1135]
769 P.TEST GA-ATGTCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGGAGCGGGTC-TCGCCGGCGGGGTTCGTGACTGGGGTGAAGTCG [1138]
770 AG.TUM GC-ATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTT-TTACCGGTAGGGTCAGCGACTGGGGTGAAGTCG [1117]
771 DV.DES GC-ATGCTCGGGTGAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGTT-TTACCGGTAGGGCCGATGATTGGGGTGAAGTCG [1139]
772 BA.FRG GCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGGAGCCGGGG-GTACCGGTAAAACTGGTGACTGGGGCTAAGTCG [1133]
773 'Zea_mays_(chloroplast)' GCCATACGGCGGCGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGGCC-AGGTTGGCTAGGCTTGCGACTGGAGTGAAGTCG [1115]
774 T.AMIT GC-ATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTT-TCGCCGGTGGGGTCTTCGACTGGGGTGAAGTCG [1128]
776 [ 2110 2120 2130 2140 ]
777 [ . . . . ]
779 Homo_sapiens TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1355]
780 Rattus_norvegicus TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1354]
781 Xenopus_laevis TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1347]
782 A._salina TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1340]
783 S._cerevisiae TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1338]
784 P.MICA TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTC------- [1335]
785 D.DISC TAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTT------ [1421]
786 T.BRUC TAACAAGGTAGCTGTAGGTGAACCTGCAGCTGGATCATTT------- [1740]
787 E.GRAC TAACAAGGTTGCTGTAGGTGAACCTGCAGCAGGATCATTG------- [1743]
788 Zea_mays TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG------- [1341]
789 D._mobilis TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCT---- [1138]
790 S._solfataricus TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCA----- [1134]
791 T._tenax TAACAAGGTAGCCGTAGGGGAACCTGCTTCTGGATCACCTCC----- [1138]
792 M._vannielii TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCC----- [1138]
793 MB._formicicum TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT---- [1142]
794 MS._hungatei TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1115]
795 H._volacanii TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140]
796 HC._morrhuae TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141]
797 H.HALO TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140]
798 H._cutirubrum TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141]
799 AN._nidulans TAACAAGGTAGCCGTACCGGAAGGTGTGGCTGGATCACCTCCTTT-- [1162]
800 HE.CHL TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1151]
801 Bc._subtilis TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1187]
802 MY.CAP TAACAAGGTATCCGTACGGGAACGTGCGGATGGATCACCTCCTTTCT [1171]
803 E._coli TAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA-- [1183]
804 MYX.XA TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1182]
805 P.TEST TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1185]
806 AG.TUM TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1164]
807 DV.DES TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTT-- [1184]
808 BA.FRG TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCT [1180]
809 'Zea_mays_(chloroplast)' TAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT-- [1160]
810 T.AMIT TAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCC----- [1170]
811 ;
812 END;
815 BEGIN CODONS;
816 CODESET * UNTITLED = Universal: all ;
817 END;
819 BEGIN ASSUMPTIONS;
820 OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ;
821 END;
823 BEGIN TREES;
825 TRANSLATE
826 1 Homo_sapiens,
827 2 Rattus_norvegicus,
828 3 Xenopus_laevis,
829 4 A._salina,
830 5 S._cerevisiae,
831 6 P.MICA,
832 7 D.DISC,
833 8 T.BRUC,
834 9 E.GRAC,
835 10 Zea_mays,
836 11 D._mobilis,
837 12 S._solfataricus,
838 13 T._tenax,
839 14 M._vannielii,
840 15 MB._formicicum,
841 16 MS._hungatei,
842 17 H._volacanii,
843 18 HC._morrhuae,
844 19 H.HALO,
845 20 H._cutirubrum,
846 21 AN._nidulans,
847 22 HE.CHL,
848 23 Bc._subtilis,
849 24 MY.CAP,
850 25 E._coli,
851 26 MYX.XA,
852 27 P.TEST,
853 28 AG.TUM,
854 29 DV.DES,
855 30 BA.FRG,
856 31 'Zea_mays_(chloroplast)',
857 32 T.AMIT
858 ;
859 TREE mp_tree_1 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32)))))))));
860 TREE mp_tree_2 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((26,(25,27)),(29,(28,32))))))));
861 TREE * UNTITLED = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32)))))))));
863 END;
867 BEGIN MACCLADE;
868 Version 3.05;
869 LastModified -1425155107;
870 Singles 1000&/0;
871 END;