t/data/gf-s71.needle

   1 ########################################
   2 # Program:  needle
   3 # Rundate:  Thu Jun 20 10:53:54 2002
   4 # Report_file: /tmp/jason/water/1/gf.s71.44_Y50C1A.2.water
   5 ########################################
   6 #=======================================
   7 #
   8 # Aligned_sequences: 2
   9 # 1: gf.s71.44
  10 # 2: Y50C1A.2
  11 # Matrix: EBLOSUM62
  12 # Gap_penalty: 10.0
  13 # Extend_penalty: 0.5
  14 #
  15 # Length: 468
  16 # Identity:     285/468 (60.9%)
  17 # Similarity:   339/468 (72.4%)
  18 # Gaps:          82/468 (17.5%)
  19 # Score: 1394.0
  20 #
  21 #
  22 #=======================================
  23
  24 gf.s71.44          1 MEDVTLHHFRWRKPVENKNGEIVYKTSETQTAEISRKDVECVANFQKSQE     50
  25                      ||||||..|.||||: ...||||||||||||.|.::||||||||||:::|
  26 Y50C1A.2           1 MEDVTLFQFTWRKPI-RLQGEIVYKTSETQTIETNKKDVECVANFQENKE     49
  27
  28 gf.s71.44         51 SQTDDFMQNGVGDGIKKEIRISKEVLGHIYDFLRDDSKVNYDRLLEFHKF    100
  29                      .|||. :.||||:.:||:|.||||||..:|||:|||||||||||||||||
  30 Y50C1A.2          50 VQTDS-VDNGVGENVKKDITISKEVLNLLYDFVRDDSKVNYDRLLEFHKF     98
  31
  32 gf.s71.44        101 DKVSLETVQKYHVETRNENIILMISNSSRKTLILFGGLSHETFCSHQARA    150
  33                      |||:|||||||||||||||||||||:|||||||||||:||||||||||||
  34 Y50C1A.2          99 DKVALETVQKYHVETRNENIILMISSSSRKTLILFGGISHETFCSHQARA    148
  35
  36 gf.s71.44        151 VLCSSSTTSSLPLPVCAISAVFYSSTQFLLGDISGNISMWTKEKMIFENK    200
  37                      :||||||:.|:|||||||||||||||||:|||:||||||.:|:|:|||.|
  38 Y50C1A.2         149 LLCSSSTSFSIPLPVCAISAVFYSSTQFILGDVSGNISMCSKDKIIFEKK    198
  39
  40 gf.s71.44        201 VTDGSVTSLELCRYGLLSGSDDGNVILWKVEESKIEKIEGIKLTVSDLSR    250
  41                      :|||:||.||:||:||||||||||:|||::..|.:||:.|.|||||||||
  42 Y50C1A.2         199 ITDGAVTCLEMCRHGLLSGSDDGNIILWQIGTSGLEKLGGTKLTVSDLSR    248
  43
  44 gf.s71.44        251 KIRRSSTSNKPVAIVSMQV----SGDEVCVATETGGLYLLTLPTLESKPL    296
  45                      |||||||||||||||||||    ||:|.|||||||||||||||||:.|||
  46 Y50C1A.2         249 KIRRSSTSNKPVAIVSMQVYVWPSGEEACVATETGGLYLLTLPTLDYKPL    298
  47
  48 gf.s71.44        297 T-QSATSIFKILYEHPYIAVVYHTSNSAIFNSEGLVDEIPFVATLAVRCG    345
  49                      : |:||||.|||:|:.::||:|||||:|:|||||||||||||||||||
  50 Y50C1A.2         299 SHQTATSINKILFENQFVAVIYHTSNAAVFNSEGLVDEIPFVATLAVR--    346
  51
  52 gf.s71.44        346 AYFIFSNQSRLIIWSMNTRSTVIDENLNCHS-ICSLSND-----------    383
  53                              .:|:::  .|...|.|..|||.| ....:|:
  54 Y50C1A.2         347 --------PKLVLF--YTSVCVQDITLNCTSPFREFNNEYNPVIKFSKIR    386
  55
  56 gf.s71.44        384 ---TLQVLDGDFNLNSQSENSATSESENLRISDLQNLRMLKLQNLRTSEF    430
  57                         .|.|::| |..:|.:.|:
  58 Y50C1A.2         387 FSADLSVING-FRTSSPNSNN                                 406
  59
  60 gf.s71.44        431 QNFRTSESQYFKKDNGEL    448
  61
  62 Y50C1A.2         407                       406
  63
  64
  65 #---------------------------------------
  66 #---------------------------------------