t/data/urease.tre.nexus

   1 #NEXUS
   2
   3 Begin trees;  [Treefile saved Thu Jun 24 10:15:07 2004]
   4 [!
   5 >Data file = /home/jes12/possel/urease/urease.cdna.nex
   6 >Heuristic search settings:
   7 >  Optimality criterion = distance (minimum evolution)
   8 >    Negative branch lengths allowed, but set to zero for tree-score calculation
   9 >    Distance measure = uncorrected ("p")
  10 >  Starting tree(s) obtained via neighbor-joining
  11 >  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
  12 >  Steepest descent option not in effect
  13 >  Initial 'MaxTrees' setting = 100
  14 >  Zero-length branches not collapsed
  15 >  'MulTrees' option in effect
  16 >  Topological constraints not enforced
  17 >  Trees are unrooted
  18 >
  19 >Heuristic search completed
  20 >   Total number of rearrangements tried = 34
  21 >   Score of best tree(s) found = 1.13334
  22 >   Number of trees retained = 1
  23 >   Time used = <1 sec (CPU time = 0.00 sec)
  24 ]
  25         Translate
  26                 1 Anidulans,
  27                 2 CneoA,
  28                 3 Cimmitis,
  29                 4 Mgrisea,
  30                 5 Ncrassa,
  31                 6 Spombe
  32                 ;
  33 tree PAUP_1 = [&U] (((1:0.188380,(4:0.147551,5:0.134318):0.027742):0.012293,3:0.175935):0.012799,2:0.212917,6:0.221404);
  34 End;