| blob | e647563905f779d0bbcba899997535457585f5de |
1 #RM scored
2 #RM descr h5 ss h3
3 #RM dfile sprintf.descr
4 >gi|173609|gb|M28984|ACARRDX A.castellani 5S ribosomal RNA
5 gi|173609|gb|M28984|ACARRDX -12.500,6,gcga 0 81 16 gggtgg gcga ccaccc
6 >gi|1236163|gb|L41047|ANNRRO Actinoplanes sp. ribosomal RNA (rRNA)
7 gi|1236163|gb|L41047|ANNRRO -15.400,6,gaaa 0 110 16 ccccgg gaaa ccgggg
8 >gi|1236163|gb|L41047|ANNRRO Actinoplanes sp. ribosomal RNA (rRNA)
9 gi|1236163|gb|L41047|ANNRRO -12.100,5,gaaa 0 111 14 cccgg gaaa ccggg
10 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
11 gi|173741|gb|M83548|AQF16SRRN -15.400,6,gaaa 0 154 16 ccccgg gaaa ccgggg
12 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
13 gi|173741|gb|M83548|AQF16SRRN -12.100,5,gaaa 0 155 14 cccgg gaaa ccggg
14 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
15 gi|173741|gb|M83548|AQF16SRRN -14.900,7,gaaa 0 1028 18 actccgc gaaa gcggagt
16 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
17 gi|173741|gb|M83548|AQF16SRRN -13.200,6,gaaa 0 1029 16 ctccgc gaaa gcggag
18 >gi|173748|gb|M64487|ARFRRLSA A.fulgicus large subunit ribosomal RNA
19 gi|173748|gb|M64487|ARFRRLSA -12.700,7,ttac 0 137 18 cgctccc ttac gggagcg
20 >gi|173748|gb|M64487|ARFRRLSA A.fulgicus large subunit ribosomal RNA
21 gi|173748|gb|M64487|ARFRRLSA -15.500,7,gtaa 1 154 18 cgctccc gtaa gggagcg
22 >gi|173748|gb|M64487|ARFRRLSA A.fulgicus large subunit ribosomal RNA
23 gi|173748|gb|M64487|ARFRRLSA -13.100,6,gtaa 1 153 16 gctccc gtaa gggagc
24 >gi|470692|gb|M82686|ARIRRE05 Aristolochia gigantea 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
25 gi|470692|gb|M82686|ARIRRE05 -12.200,7,gtca 1 174 18 gtggagg gtca cctccac
26 >gi|470705|gb|M82700|ARURRE05 Arundinaria gigantea 18S ribosomal RNA (18S rRNA), ca. bp 1204 to 1414 in mature rRNA
27 gi|470705|gb|M82700|ARURRE05 -12.000,7,catc 0 156 18 gcggagg catc cctccgc
28 >gi|470705|gb|M82700|ARURRE05 Arundinaria gigantea 18S ribosomal RNA (18S rRNA), ca. bp 1204 to 1414 in mature rRNA
29 gi|470705|gb|M82700|ARURRE05 -12.700,7,gatg 1 173 18 gcggagg gatg cctccgc
30 >gi|470750|gb|M82449|AVORRE05 Persea borbonia 18S ribosomal RNA (18S rRNA), ca. bp 1205 to 1414 in mature rRNA
31 gi|470750|gb|M82449|AVORRE05 -12.200,7,gata 1 172 18 gtggagg gata cctccac
32 >gi|439580|gb|L15530|AZORR16SA Azoarcus sp. (strain BH72) 16S ribosomal RNA (16S rRNA)
33 gi|439580|gb|L15530|AZORR16SA -12.500,5,ttcg 0 76 14 ggggc ttcg gcccc
34 >gi|173823|gb|M79434|BAIRRDG02 Bacterial sp. (TH3) 16S rRNA sequence
35 gi|173823|gb|M79434|BAIRRDG02 -13.100,6,gaaa 0 52 16 caccgg gaaa ccggtg
36 >gi|603438|gb|L26511|BEDERRNAA Berndtia purpurea 18S ribosomal RNA (18S rRNA)
37 gi|603438|gb|L26511|BEDERRNAA -13.100,6,gaaa 1 816 16 caggcg gaaa cgcctg
38 >gi|304227|gb|L19406|BODRR24SA Bodo caudatus 24S ribosomal RNA large subunit
39 gi|304227|gb|L19406|BODRR24SA -15.400,6,gaaa 0 512 16 cccggg gaaa cccggg
40 >gi|304227|gb|L19406|BODRR24SA Bodo caudatus 24S ribosomal RNA large subunit
41 gi|304227|gb|L19406|BODRR24SA -12.100,5,gaaa 0 513 14 ccggg gaaa cccgg
42 >gi|173977|gb|M97571|BRARREA Branchiostoma floridae 18S ribosomal RNA (18S rRNA), 5' end
43 gi|173977|gb|M97571|BRARREA -12.200,6,ttcg 0 225 16 ccgggg ttcg ccccgg
44 >gi|470792|gb|M82728|BRERRE05 Brasenia schreberi 18S ribosomal RNA (18S rRNA), ca. bp 1238 to 1414 in mature rRNA
45 gi|470792|gb|M82728|BRERRE05 -12.200,7,ggta 1 139 18 gtggagg ggta cctccac
46 >gi|289579|gb|L14636|CCYRRDB Capnocytophaga sputigena 16S ribosomal RNA
47 gi|289579|gb|L14636|CCYRRDB -12.400,7,ttcg 0 74 18 ggttacc ttcg ggtaacc
48 >gi|174069|gb|M34116|CFXRRDA C.aurantiacus 16S ribosomal RNA
49 gi|174069|gb|M34116|CFXRRDA -13.200,6,gaaa 0 141 16 cccgtc gaaa gacggg
50 >gi|174076|gb|M62791|CHBRRDAA C.vibrioforme 16S ribosomal RNA
51 gi|174076|gb|M62791|CHBRRDAA -12.200,6,gaaa 0 148 16 ccccga gaaa tcgggg
52 >gi|174079|gb|M31769|CHBSSRNA C.limicola ribosomal RNA small subunit
53 gi|174079|gb|M31769|CHBSSRNA -12.200,6,gaaa 0 146 16 ccccga gaaa tcgggg
54 >gi|174102|gb|K03164|CHKUR5B Chicken U5B small nuclear RNA, complete
55 gi|174102|gb|K03164|CHKUR5B -16.200,7,ttcg 0 97 18 gctccgc ttcg gcggagc
56 >gi|174102|gb|K03164|CHKUR5B Chicken U5B small nuclear RNA, complete
57 gi|174102|gb|K03164|CHKUR5B -12.800,6,ttcg 0 98 16 ctccgc ttcg gcggag
58 >gi|174102|gb|K03164|CHKUR5B Chicken U5B small nuclear RNA, complete
59 gi|174102|gb|K03164|CHKUR5B -12.400,7,cgaa 1 114 18 gctccgc cgaa gcggagc
60 >gi|174103|gb|K00474|CHKURU4A Chicken U4a small nuclear RNA (snRNA)
61 gi|174103|gb|K00474|CHKURU4A -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
62 >gi|174104|gb|K00475|CHKURU4B Chicken U4b small nuclear RNA (snRNA)
63 gi|174104|gb|K00475|CHKURU4B -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
64 >gi|174144|gb|M59092|CLORR16SR Clostridium kluyveri 16S ribosomal RNA
65 gi|174144|gb|M59092|CLORR16SR -13.700,7,atcg 0 809 18 ggggggt atcg acccccc
66 >gi|174144|gb|M59092|CLORR16SR Clostridium kluyveri 16S ribosomal RNA
67 gi|174144|gb|M59092|CLORR16SR -13.100,7,cgat 1 826 18 ggggggt cgat acccccc
68 >gi|174209|gb|M20058|CRSRREA3 Chiton (C.stelleri) 18S rRNA, segment 3 of 3
69 gi|174209|gb|M20058|CRSRREA3 -12.900,5,ggaa 0 118 14 ggccc ggaa gggcc
70 >gi|174273|gb|M59057|DEOSSRNA Dermatophilus congolensis small subunit ribosomal RNA sequence
71 gi|174273|gb|M59057|DEOSSRNA -12.100,5,gaaa 0 151 14 ccccg gaaa cgggg
72 >gi|470912|gb|M82693|DRIRRE05 Drimys aromatica 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
73 gi|470912|gb|M82693|DRIRRE05 -15.200,7,gtga 1 174 18 gtggagg gtga cctccac
74 >gi|470912|gb|M82693|DRIRRE05 Drimys aromatica 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
75 gi|470912|gb|M82693|DRIRRE05 -12.500,6,gtga 1 173 16 tggagg gtga cctcca
76 >gi|174363|gb|K01260|ECOPRM1 Escherichia coli 10sb (M1) RNA; the RNA component of RNase P
77 gi|174363|gb|K01260|ECOPRM1 -12.000,5,gcaa 0 152 14 cccgc gcaa gcggg
78 >gi|174493|gb|M59388|ELERR18S E.cuneatus 18S ribosomal RNA
79 gi|174493|gb|M59388|ELERR18S -13.300,6,gaaa 0 728 16 gtcgcc gaaa ggcgac
80 >gi|174566|gb|M62683|FIBRR16SB Fibrobacter succinogenes succinogenes (strain A3C) 16S ribosomal RNA
81 gi|174566|gb|M62683|FIBRR16SB -12.900,6,gttc 0 814 16 ccgggg gttc ccccgg
82 >gi|174566|gb|M62683|FIBRR16SB Fibrobacter succinogenes succinogenes (strain A3C) 16S ribosomal RNA
83 gi|174566|gb|M62683|FIBRR16SB -12.900,6,gaac 1 829 16 ccgggg gaac ccccgg
84 >gi|174567|gb|M62684|FIBRR16SC Fibrobacter succinogenes succinogenes (strain B1) 16S ribosomal RNA
85 gi|174567|gb|M62684|FIBRR16SC -12.900,6,gttc 0 810 16 ccgggg gttc ccccgg
86 >gi|174567|gb|M62684|FIBRR16SC Fibrobacter succinogenes succinogenes (strain B1) 16S ribosomal RNA
87 gi|174567|gb|M62684|FIBRR16SC -12.900,6,gaac 1 825 16 ccgggg gaac ccccgg
88 >gi|174568|gb|M62685|FIBRR16SD Fibrobacter succinogenes succinogenes (strain BL2) 16S ribosomal RNA
89 gi|174568|gb|M62685|FIBRR16SD -12.900,6,gttc 0 810 16 ccgggg gttc ccccgg
90 >gi|174568|gb|M62685|FIBRR16SD Fibrobacter succinogenes succinogenes (strain BL2) 16S ribosomal RNA
91 gi|174568|gb|M62685|FIBRR16SD -12.900,6,gaac 1 825 16 ccgggg gaac ccccgg
92 >gi|174570|gb|M62687|FIBRR16SF Fibrobacter intestinalis (strain DR7) 16S ribosomal RNA
93 gi|174570|gb|M62687|FIBRR16SF -13.900,6,gcga 0 816 16 cccggg gcga cccggg
94 >gi|174572|gb|M62689|FIBRR16SH Fibrobacter succinogenes (strain HM2) 16S ribosomal RNA
95 gi|174572|gb|M62689|FIBRR16SH -12.200,6,ttcg 0 809 16 ccgggg ttcg ccccgg
96 >gi|174573|gb|M62690|FIBRR16SI Fibrobacter intestinalis (strain JG1) 16S ribosomal RNA
97 gi|174573|gb|M62690|FIBRR16SI -13.900,6,gcga 0 816 16 cccggg gcga cccggg
98 >gi|174574|gb|M62691|FIBRR16SJ Fibrobacter intestinalis (strain LH1) 16S ribosomal RNA
99 gi|174574|gb|M62691|FIBRR16SJ -13.900,6,gcga 0 816 16 cccggg gcga cccggg
100 >gi|174576|gb|M62693|FIBRR16SL Fibrobacter succinogenes (strain MC1) 16S ribosomal RNA
101 gi|174576|gb|M62693|FIBRR16SL -12.100,6,acat 0 168 16 ccccgg acat ccgggg
102 >gi|174576|gb|M62693|FIBRR16SL Fibrobacter succinogenes (strain MC1) 16S ribosomal RNA
103 gi|174576|gb|M62693|FIBRR16SL -12.200,6,ttcg 0 808 16 ccgggg ttcg ccccgg
104 >gi|174576|gb|M62693|FIBRR16SL Fibrobacter succinogenes (strain MC1) 16S ribosomal RNA
105 gi|174576|gb|M62693|FIBRR16SL -12.100,6,atgt 1 183 16 ccccgg atgt ccgggg
106 >gi|174579|gb|M62696|FIBRR16SO Fibrobacter succinogenes (strain S85) 16S ribosomal RNA
107 gi|174579|gb|M62696|FIBRR16SO -12.900,6,gttc 0 811 16 ccgggg gttc ccccgg
108 >gi|174579|gb|M62696|FIBRR16SO Fibrobacter succinogenes (strain S85) 16S ribosomal RNA
109 gi|174579|gb|M62696|FIBRR16SO -12.900,6,gaac 1 826 16 ccgggg gaac ccccgg
110 >gi|174591|gb|M59231|FLXRR16S Flexistipes sinusarabici small subunit rRNA
111 gi|174591|gb|M59231|FLXRR16S -13.600,6,ttcg 0 76 16 cctccc ttcg gggagg
112 >gi|174592|gb|L11306|FRARRDX Frankia sp. 16S ribosomal RNA
113 gi|174592|gb|L11306|FRARRDX -12.100,5,gaaa 0 143 14 cccgg gaaa ccggg
114 >gi|174596|gb|M97575|FSARREE Petromyzon marinus 18S ribosomal RNA (18S rRNA), 5' end
115 gi|174596|gb|M97575|FSARREE -12.500,6,gcga 0 1714 16 gggcag gcga ctgccc
116 >gi|174670|gb|M91611|GAORRITSA Gastrosuillus laricinus ribosomal RNA internal transcribed spacer
117 gi|174670|gb|M91611|GAORRITSA -13.100,6,gcga 0 89 16 cgcggg gcga cccgcg
118 >gi|174671|gb|M91612|GAORRITSB Gastrosuillus luricinus ribosomal RNA internal transcribed spacer
119 gi|174671|gb|M91612|GAORRITSB -13.100,6,gcga 0 105 16 cgcggg gcga cccgcg
120 >gi|695346|gb|L36199|HBMRRDM Heliobacillus mobilis 16S ribosomal RNA (16S rRNA)
121 gi|695346|gb|L36199|HBMRRDM -13.800,6,gaaa 0 152 16 cagccc gaaa gggctg
122 >gi|174809|gb|M37643|HECRR16SB Helicobacter felis 16S rRNA
123 gi|174809|gb|M37643|HECRR16SB -12.700,7,gaaa 0 962 18 tccccta gaaa tagggga
124 >gi|174838|gb|L04675|HLO16SRRNA Heliothrix oregonensis 16S ribosomal RNA (16S rRNA), partial rRNA
125 gi|174838|gb|L04675|HLO16SRRNA -12.800,5,gaaa 1 38 14 ccccc gaaa ggggg
126 >gi|174913|gb|M23820|HUMRRAUA Human U5-A ribosomal RNA
127 gi|174913|gb|M23820|HUMRRAUA -12.500,7,cttg 0 101 18 gccttgc cttg gcaaggc
128 >gi|174913|gb|M23820|HUMRRAUA Human U5-A ribosomal RNA
129 gi|174913|gb|M23820|HUMRRAUA -12.500,7,caag 1 118 18 gccttgc caag gcaaggc
130 >gi|174944|gb|K00472|HUMURU4B Human U4b small nuclear RNA (snRNA)
131 gi|174944|gb|K00472|HUMURU4B -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
132 >gi|174959|gb|M32851|HYM28SRRNA Hymenochirus curtipes 28S ribosomal RNA, complete
133 gi|174959|gb|M32851|HYM28SRRNA -13.300,7,cgcg 0 335 18 agccgcg cgcg cgcggct
134 >gi|174959|gb|M32851|HYM28SRRNA Hymenochirus curtipes 28S ribosomal RNA, complete
135 gi|174959|gb|M32851|HYM28SRRNA -13.300,7,cgcg 1 352 18 agccgcg cgcg cgcggct
136 >gi|175002|gb|M97573|LARRREC Lampetra aepyptera 18S ribosomal RNA (18S rRNA), 5' end
137 gi|175002|gb|M97573|LARRREC -12.500,6,gcga 0 1714 16 gggcag gcga ctgccc
138 >gi|471872|gb|M82532|LAURRE05 Lactuca sativa 18S ribosomal RNA (18S rRNA), ca. bp 1205 to 1414 in mature rRNA
139 gi|471872|gb|M82532|LAURRE05 -12.200,7,gata 1 172 18 gtggagg gata cctccac
140 >gi|175039|gb|M23727|LBARRNAV L.vitulinus 16S ribosomal RNA small subunit
141 gi|175039|gb|M23727|LBARRNAV -13.400,6,gaga 0 1000 16 gggacg gaga cgtccc
142 >gi|175044|gb|M23729|LBARRNAZ L.catenaforme 16S ribosomal RNA small subunit
143 gi|175044|gb|M23729|LBARRNAZ -15.700,7,gaga 0 1000 18 tcgcgcg gaga cgcgcga
144 >gi|175044|gb|M23729|LBARRNAZ L.catenaforme 16S ribosomal RNA small subunit
145 gi|175044|gb|M23729|LBARRNAZ -13.800,6,gaga 0 1001 16 cgcgcg gaga cgcgcg
146 >gi|471885|gb|M82539|LIQRRE05 Liquidambar styraciflua 18S ribosomal RNA (18S rRNA), ca. bp 1205 to 1414 in mature rRNA
147 gi|471885|gb|M82539|LIQRRE05 -12.200,7,gtca 1 172 18 gtggagg gtca cctccac
148 >gi|175140|gb|M58822|LISRR16ST Listeria monocytogenes 16S ribosomal RNA
149 gi|175140|gb|M58822|LISRR16ST -13.300,6,gaaa 0 153 16 ctccgg gaaa ccggag
150 >gi|951043|gb|L33974|LTTRRD Leptothrix discophora (strain SP-6) 16S ribosomal RNA (16S rRNA)
151 gi|951043|gb|L33974|LTTRRD -12.000,5,gaaa 0 135 14 ccggc gaaa gccgg
152 >gi|504534|gb|L33979|LTTRRDB Leptothrix cholodnii (strain LMG 7171) 16S ribosomal RNA (16S rRNA)
153 gi|504534|gb|L33979|LTTRRDB -12.000,5,gaaa 0 135 14 ccggc gaaa gccgg
154 >gi|504535|gb|L33981|LTTRRDC Leptothrix sp. (strain NC-1) 16S ribosomal RNA (16S rRNA)
155 gi|504535|gb|L33981|LTTRRDC -12.000,5,gaaa 0 135 14 ccggc gaaa gccgg
156 >gi|308922|gb|L10943|MABRRI Marine Eubacterial sp. (aggregate agg27) PCR generated ribosomal RNA fragment
157 gi|308922|gb|L10943|MABRRI -12.100,7,acat 0 81 18 gggagag acat ctctccc
158 >gi|308922|gb|L10943|MABRRI Marine Eubacterial sp. (aggregate agg27) PCR generated ribosomal RNA fragment
159 gi|308922|gb|L10943|MABRRI -12.100,7,atgt 1 98 18 gggagag atgt ctctccc
160 >gi|175375|gb|M95654|MTBRRDB Methylobacterium sp. 16S ribosomal RNA
161 gi|175375|gb|M95654|MTBRRDB -12.600,7,cttg 0 776 18 tggcctg cttg caggcca
162 >gi|175375|gb|M95654|MTBRRDB Methylobacterium sp. 16S ribosomal RNA
163 gi|175375|gb|M95654|MTBRRDB -12.600,7,caag 1 793 18 tggcctg caag caggcca
164 >gi|175376|gb|M95655|MTBRRDC Methylobacterium sp. 16S ribosomal RNA
165 gi|175376|gb|M95655|MTBRRDC -12.600,7,cttg 0 776 18 tggcctg cttg caggcca
166 >gi|175376|gb|M95655|MTBRRDC Methylobacterium sp. 16S ribosomal RNA
167 gi|175376|gb|M95655|MTBRRDC -12.600,7,caag 1 793 18 tggcctg caag caggcca
168 >gi|175408|gb|M14414|MUSRRMA Mouse 5.4S ribosomal small nuclear RNA
169 gi|175408|gb|M14414|MUSRRMA -14.000,6,gaaa 1 44 16 ccctcc gaaa ggaggg
170 >gi|175433|gb|M10328|MUSUR57S Mouse 5.7S U4 small nuclear RNA type a
171 gi|175433|gb|M10328|MUSUR57S -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
172 >gi|175434|gb|M18004|MUSUR57T Mouse 5.7S U4 small nuclear RNA type b
173 gi|175434|gb|M18004|MUSUR57T -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
174 >gi|175446|gb|M59126|MVORR16SY Methanococcus jannaschii 16S ribosomal RNA
175 gi|175446|gb|M59126|MVORR16SY -13.700,6,ttcg 0 65 16 gctccc ttcg gggagc
176 >gi|175555|gb|L06168|NGORR16SB Neisseria flavescens 16S ribosomal RNA
177 gi|175555|gb|L06168|NGORR16SB -13.300,6,gaga 0 1005 16 cctccg gaga cggagg
178 >gi|294001|gb|L16523|NYSRR23S Nyssa sativa 26S ribosomal RNA
179 gi|294001|gb|L16523|NYSRR23S -15.200,7,gaaa 0 88 18 gccagag gaaa ctctggc
180 >gi|175717|gb|M59064|PSERR16SB Pseudomonas diminuta 16S ribosomal RNA
181 gi|175717|gb|M59064|PSERR16SB -13.200,6,gaga 0 950 16 gccacg gaga cgtggc
182 >gi|472129|gb|M82490|PTNRRE04 Platanus occidentalis 18S ribosomal RNA (18S rRNA), ca. bp 1207 to 1414 in mature rRNA
183 gi|472129|gb|M82490|PTNRRE04 -12.200,7,gtca 1 170 18 gtggagg gtca cctccac
184 >gi|294428|gb|L16474|PVORR16SJ Prevotella oris (ATCC 33573) 16S ribosomal RNA
185 gi|294428|gb|L16474|PVORR16SJ -12.100,7,cttg 0 78 18 ggggaag cttg cttcccc
186 >gi|294428|gb|L16474|PVORR16SJ Prevotella oris (ATCC 33573) 16S ribosomal RNA
187 gi|294428|gb|L16474|PVORR16SJ -12.100,7,caag 1 95 18 ggggaag caag cttcccc
188 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
189 gi|408945|gb|L19921|PYWRRDX -13.400,7,ttct 0 48 18 gcgtccc ttct gggacgc
190 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
191 gi|408945|gb|L19921|PYWRRDX -12.900,6,gtac 0 603 16 ccgggg gtac ccccgg
192 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
193 gi|408945|gb|L19921|PYWRRDX -14.100,7,gctc 0 1066 18 ccctccc gctc gggaggg
194 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
195 gi|408945|gb|L19921|PYWRRDX -14.100,7,gagc 1 1083 18 ccctccc gagc gggaggg
196 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
197 gi|408945|gb|L19921|PYWRRDX -12.900,6,gtac 1 618 16 ccgggg gtac ccccgg
198 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
199 gi|408945|gb|L19921|PYWRRDX -12.900,7,agaa 1 65 18 gcgtccc agaa gggacgc
200 >gi|472171|gb|M82511|RACRRE05 Ranunculus acris 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
201 gi|472171|gb|M82511|RACRRE05 -12.200,7,ggta 1 174 18 gtggagg ggta cctccac
202 >gi|175815|gb|M11057|RATUR8 Rat U8 small nuclear RNA from Novikoff hepatoma cells
203 gi|175815|gb|M11057|RATUR8 -14.000,6,gaaa 1 43 16 ccctcc gaaa ggaggg
204 >gi|175816|gb|K00477|RATURU4A Rat U4a small nuclear RNA (snRNA)
205 gi|175816|gb|K00477|RATURU4A -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
206 >gi|175817|gb|K00478|RATURU4B Rat U4b small nuclear RNA (snRNA)
207 gi|175817|gb|K00478|RATURU4B -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
208 >gi|175851|gb|M91613|RHSRRITSA Rhizopogon subcaerulescens ribosomal RNA internal transcribed spacer
209 gi|175851|gb|M91613|RHSRRITSA -12.800,7,tcgc 0 40 18 gcctcgc tcgc gcgaggc
210 >gi|175851|gb|M91613|RHSRRITSA Rhizopogon subcaerulescens ribosomal RNA internal transcribed spacer
211 gi|175851|gb|M91613|RHSRRITSA -16.100,7,gcga 1 57 18 gcctcgc gcga gcgaggc
212 >gi|175851|gb|M91613|RHSRRITSA Rhizopogon subcaerulescens ribosomal RNA internal transcribed spacer
213 gi|175851|gb|M91613|RHSRRITSA -12.700,6,gcga 1 56 16 cctcgc gcga gcgagg
214 >gi|294741|gb|L15196|ROLRR18S Roridula gorgonias 18S ribosomal RNA
215 gi|294741|gb|L15196|ROLRR18S -12.200,7,gtca 1 628 18 gtggagg gtca cctccac
216 >gi|175876|gb|M59069|RSPRR16SD Rhodospirillum salinarum 16S ribosomal RNA
217 gi|175876|gb|M59069|RSPRR16SD -16.700,7,gaga 0 953 18 gcctcgg gaga ccgaggc
218 >gi|175876|gb|M59069|RSPRR16SD Rhodospirillum salinarum 16S ribosomal RNA
219 gi|175876|gb|M59069|RSPRR16SD -13.300,6,gaga 0 954 16 cctcgg gaga ccgagg
220 >gi|175876|gb|M59069|RSPRR16SD Rhodospirillum salinarum 16S ribosomal RNA
221 gi|175876|gb|M59069|RSPRR16SD -12.300,7,tctc 1 970 18 gcctcgg tctc ccgaggc
222 >gi|457377|gb|L25709|SGBRRNA Solemya reidi gill symbiont ribosomal RNA
223 gi|457377|gb|L25709|SGBRRNA -13.900,6,gaaa 0 140 16 cctggg gaaa cccagg
224 >gi|175944|gb|M32848|SIL28SRRNA Silurana tropicalis 28S ribosomal RNA, complete
225 gi|175944|gb|M32848|SIL28SRRNA -13.000,6,gcgc 0 341 16 gccggg gcgc cccggc
226 >gi|175944|gb|M32848|SIL28SRRNA Silurana tropicalis 28S ribosomal RNA, complete
227 gi|175944|gb|M32848|SIL28SRRNA -13.000,6,gcgc 1 356 16 gccggg gcgc cccggc
228 >gi|175988|gb|M88722|SPARR16SB Spirochaeta halophila 16S ribosomal RNA
229 gi|175988|gb|M88722|SPARR16SB -12.800,6,ttcg 0 2 16 cgtccc ttcg gggacg
230 >gi|176013|gb|M62707|SPNRR18SA Sphaeromonas communis (strain FG) 18S ribosomal RNA
231 gi|176013|gb|M62707|SPNRR18SA -12.700,7,gcaa 0 183 18 aacctgg gcaa ccaggtt
232 >gi|176061|gb|M91614|SUIRRITSA Suillus grevillei ribosomal RNA internal transcribed spacer
233 gi|176061|gb|M91614|SUIRRITSA -13.100,6,gcga 0 105 16 cgcggg gcga cccgcg
234 >gi|176062|gb|M91615|SUIRRITSB Suillus grevillei ribosomal RNA internal transcribed spacer
235 gi|176062|gb|M91615|SUIRRITSB -13.100,6,gcga 0 105 16 cgcggg gcga cccgcg
236 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
237 gi|176197|gb|M67497|THCLRRNA -16.600,7,gaaa 0 263 18 ctccggg gaaa cccggag
238 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
239 gi|176197|gb|M67497|THCLRRNA -14.000,6,gaaa 0 264 16 tccggg gaaa cccgga
240 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
241 gi|176197|gb|M67497|THCLRRNA -12.100,5,gaaa 0 265 14 ccggg gaaa cccgg
242 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
243 gi|176197|gb|M67497|THCLRRNA -13.100,6,gaaa 0 1004 16 ggggga gaaa tccccc
244 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
245 gi|176197|gb|M67497|THCLRRNA -12.200,7,tttc 1 280 18 ctccggg tttc cccggag
246 >gi|176199|gb|M21529|THCRRD T.celer 16S ribosomal RNA
247 gi|176199|gb|M21529|THCRRD -12.900,7,ggaa 0 1455 18 ccgtagg ggaa cctacgg
248 >gi|176219|gb|M67498|TMORRNAA Thermotoga maritima large subunit ribosomal RNA, complete
249 gi|176219|gb|M67498|TMORRNAA -12.000,5,gaaa 0 152 14 ccgcc gaaa ggcgg
250 >gi|176219|gb|M67498|TMORRNAA Thermotoga maritima large subunit ribosomal RNA, complete
251 gi|176219|gb|M67498|TMORRNAA -13.700,6,ttcg 0 1615 16 ggtccc ttcg gggacc
252 >gi|176254|gb|M57738|TRPRRDSB Treponema succinifaciens 16S rRNA
253 gi|176254|gb|M57738|TRPRRDSB -16.400,7,gaga 0 1036 18 ccgcctg gaga caggcgg
254 >gi|176254|gb|M57738|TRPRRDSB Treponema succinifaciens 16S rRNA
255 gi|176254|gb|M57738|TRPRRDSB -13.100,6,gaga 0 1037 16 cgcctg gaga caggcg
256 >gi|176254|gb|M57738|TRPRRDSB Treponema succinifaciens 16S rRNA
257 gi|176254|gb|M57738|TRPRRDSB -12.000,7,tctc 1 1053 18 ccgcctg tctc caggcgg
258 >gi|176257|gb|M59294|TRPSSRNAA Treponema sp. small subunit ribosomal RNA
259 gi|176257|gb|M59294|TRPSSRNAA -12.800,7,gaga 0 1026 18 tcgcatg gaga catgcga
260 >gi|1220551|gb|L27800|TRRBRDNAA Trichoderma reesei 5.8S ribosomal DNA (5.8S rDNA)
261 gi|1220551|gb|L27800|TRRBRDNAA -12.500,7,tatt 0 118 18 ccgccag tatt ctggcgg
262 >gi|1220551|gb|L27800|TRRBRDNAA Trichoderma reesei 5.8S ribosomal DNA (5.8S rDNA)
263 gi|1220551|gb|L27800|TRRBRDNAA -12.100,7,aata 1 135 18 ccgccag aata ctggcgg
264 >gi|603469|gb|L26520|TRWERRNAA Trypetesa lampas 18S ribosomal RNA (18S rRNA)
265 gi|603469|gb|L26520|TRWERRNAA -13.100,6,gaaa 1 818 16 caggcg gaaa cgcctg
266 >gi|176260|gb|M35966|TTERRDA T.tenax 16S rRNA
267 gi|176260|gb|M35966|TTERRDA -13.900,7,ggcg 0 63 18 cgcccgg ggcg ccgggcg
268 >gi|176260|gb|M35966|TTERRDA T.tenax 16S rRNA
269 gi|176260|gb|M35966|TTERRDA -13.200,7,cgcc 1 80 18 cgcccgg cgcc ccgggcg
270 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
271 gi|603470|gb|L26521|ULOERRNAA -12.500,7,tcac 0 225 18 cgtgccc tcac gggcacg
272 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
273 gi|603470|gb|L26521|ULOERRNAA -14.400,7,tgaa 0 1785 18 ccgcagg tgaa cctgcgg
274 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
275 gi|603470|gb|L26521|ULOERRNAA -12.900,7,ttca 1 1802 18 ccgcagg ttca cctgcgg
276 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
277 gi|603470|gb|L26521|ULOERRNAA -16.300,7,gtga 1 242 18 cgtgccc gtga gggcacg
278 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
279 gi|603470|gb|L26521|ULOERRNAA -13.900,6,gtga 1 241 16 gtgccc gtga gggcac
280 >gi|475134|gb|M82432|ZAMRREA02 Zamia ottonis 18S ribosomal RNA (18S rRNA), ca. bp 234 to 287 in mature rRNA
281 gi|475134|gb|M82432|ZAMRREA02 -12.200,7,gata 1 172 18 gtggagg gata cctccac
282 #RM scored
283 #RM descr h5 ss h3
284 #RM dfile sprintf.descr
285 >gi|173609|gb|M28984|ACARRDX A.castellani 5S ribosomal RNA
286 gi|173609|gb|M28984|ACARRDX -12.500,6,gcga 0 81 16 gggtgg gcga ccaccc
287 >gi|1236163|gb|L41047|ANNRRO Actinoplanes sp. ribosomal RNA (rRNA)
288 gi|1236163|gb|L41047|ANNRRO -15.400,6,gaaa 0 110 16 ccccgg gaaa ccgggg
289 >gi|1236163|gb|L41047|ANNRRO Actinoplanes sp. ribosomal RNA (rRNA)
290 gi|1236163|gb|L41047|ANNRRO -12.100,5,gaaa 0 111 14 cccgg gaaa ccggg
291 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
292 gi|173741|gb|M83548|AQF16SRRN -15.400,6,gaaa 0 154 16 ccccgg gaaa ccgggg
293 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
294 gi|173741|gb|M83548|AQF16SRRN -12.100,5,gaaa 0 155 14 cccgg gaaa ccggg
295 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
296 gi|173741|gb|M83548|AQF16SRRN -14.900,7,gaaa 0 1028 18 actccgc gaaa gcggagt
297 >gi|173741|gb|M83548|AQF16SRRN Aquifex pyrophilus 16S ribosomal RNA (16S rRNA)
298 gi|173741|gb|M83548|AQF16SRRN -13.200,6,gaaa 0 1029 16 ctccgc gaaa gcggag
299 >gi|173748|gb|M64487|ARFRRLSA A.fulgicus large subunit ribosomal RNA
300 gi|173748|gb|M64487|ARFRRLSA -12.700,7,ttac 0 137 18 cgctccc ttac gggagcg
301 >gi|173748|gb|M64487|ARFRRLSA A.fulgicus large subunit ribosomal RNA
302 gi|173748|gb|M64487|ARFRRLSA -15.500,7,gtaa 1 154 18 cgctccc gtaa gggagcg
303 >gi|173748|gb|M64487|ARFRRLSA A.fulgicus large subunit ribosomal RNA
304 gi|173748|gb|M64487|ARFRRLSA -13.100,6,gtaa 1 153 16 gctccc gtaa gggagc
305 >gi|470692|gb|M82686|ARIRRE05 Aristolochia gigantea 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
306 gi|470692|gb|M82686|ARIRRE05 -12.200,7,gtca 1 174 18 gtggagg gtca cctccac
307 >gi|470705|gb|M82700|ARURRE05 Arundinaria gigantea 18S ribosomal RNA (18S rRNA), ca. bp 1204 to 1414 in mature rRNA
308 gi|470705|gb|M82700|ARURRE05 -12.000,7,catc 0 156 18 gcggagg catc cctccgc
309 >gi|470705|gb|M82700|ARURRE05 Arundinaria gigantea 18S ribosomal RNA (18S rRNA), ca. bp 1204 to 1414 in mature rRNA
310 gi|470705|gb|M82700|ARURRE05 -12.700,7,gatg 1 173 18 gcggagg gatg cctccgc
311 >gi|470750|gb|M82449|AVORRE05 Persea borbonia 18S ribosomal RNA (18S rRNA), ca. bp 1205 to 1414 in mature rRNA
312 gi|470750|gb|M82449|AVORRE05 -12.200,7,gata 1 172 18 gtggagg gata cctccac
313 >gi|439580|gb|L15530|AZORR16SA Azoarcus sp. (strain BH72) 16S ribosomal RNA (16S rRNA)
314 gi|439580|gb|L15530|AZORR16SA -12.500,5,ttcg 0 76 14 ggggc ttcg gcccc
315 >gi|173823|gb|M79434|BAIRRDG02 Bacterial sp. (TH3) 16S rRNA sequence
316 gi|173823|gb|M79434|BAIRRDG02 -13.100,6,gaaa 0 52 16 caccgg gaaa ccggtg
317 >gi|603438|gb|L26511|BEDERRNAA Berndtia purpurea 18S ribosomal RNA (18S rRNA)
318 gi|603438|gb|L26511|BEDERRNAA -13.100,6,gaaa 1 816 16 caggcg gaaa cgcctg
319 >gi|304227|gb|L19406|BODRR24SA Bodo caudatus 24S ribosomal RNA large subunit
320 gi|304227|gb|L19406|BODRR24SA -15.400,6,gaaa 0 512 16 cccggg gaaa cccggg
321 >gi|304227|gb|L19406|BODRR24SA Bodo caudatus 24S ribosomal RNA large subunit
322 gi|304227|gb|L19406|BODRR24SA -12.100,5,gaaa 0 513 14 ccggg gaaa cccgg
323 >gi|173977|gb|M97571|BRARREA Branchiostoma floridae 18S ribosomal RNA (18S rRNA), 5' end
324 gi|173977|gb|M97571|BRARREA -12.200,6,ttcg 0 225 16 ccgggg ttcg ccccgg
325 >gi|470792|gb|M82728|BRERRE05 Brasenia schreberi 18S ribosomal RNA (18S rRNA), ca. bp 1238 to 1414 in mature rRNA
326 gi|470792|gb|M82728|BRERRE05 -12.200,7,ggta 1 139 18 gtggagg ggta cctccac
327 >gi|289579|gb|L14636|CCYRRDB Capnocytophaga sputigena 16S ribosomal RNA
328 gi|289579|gb|L14636|CCYRRDB -12.400,7,ttcg 0 74 18 ggttacc ttcg ggtaacc
329 >gi|174069|gb|M34116|CFXRRDA C.aurantiacus 16S ribosomal RNA
330 gi|174069|gb|M34116|CFXRRDA -13.200,6,gaaa 0 141 16 cccgtc gaaa gacggg
331 >gi|174076|gb|M62791|CHBRRDAA C.vibrioforme 16S ribosomal RNA
332 gi|174076|gb|M62791|CHBRRDAA -12.200,6,gaaa 0 148 16 ccccga gaaa tcgggg
333 >gi|174079|gb|M31769|CHBSSRNA C.limicola ribosomal RNA small subunit
334 gi|174079|gb|M31769|CHBSSRNA -12.200,6,gaaa 0 146 16 ccccga gaaa tcgggg
335 >gi|174102|gb|K03164|CHKUR5B Chicken U5B small nuclear RNA, complete
336 gi|174102|gb|K03164|CHKUR5B -16.200,7,ttcg 0 97 18 gctccgc ttcg gcggagc
337 >gi|174102|gb|K03164|CHKUR5B Chicken U5B small nuclear RNA, complete
338 gi|174102|gb|K03164|CHKUR5B -12.800,6,ttcg 0 98 16 ctccgc ttcg gcggag
339 >gi|174102|gb|K03164|CHKUR5B Chicken U5B small nuclear RNA, complete
340 gi|174102|gb|K03164|CHKUR5B -12.400,7,cgaa 1 114 18 gctccgc cgaa gcggagc
341 >gi|174103|gb|K00474|CHKURU4A Chicken U4a small nuclear RNA (snRNA)
342 gi|174103|gb|K00474|CHKURU4A -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
343 >gi|174104|gb|K00475|CHKURU4B Chicken U4b small nuclear RNA (snRNA)
344 gi|174104|gb|K00475|CHKURU4B -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
345 >gi|174144|gb|M59092|CLORR16SR Clostridium kluyveri 16S ribosomal RNA
346 gi|174144|gb|M59092|CLORR16SR -13.700,7,atcg 0 809 18 ggggggt atcg acccccc
347 >gi|174144|gb|M59092|CLORR16SR Clostridium kluyveri 16S ribosomal RNA
348 gi|174144|gb|M59092|CLORR16SR -13.100,7,cgat 1 826 18 ggggggt cgat acccccc
349 >gi|174209|gb|M20058|CRSRREA3 Chiton (C.stelleri) 18S rRNA, segment 3 of 3
350 gi|174209|gb|M20058|CRSRREA3 -12.900,5,ggaa 0 118 14 ggccc ggaa gggcc
351 >gi|174273|gb|M59057|DEOSSRNA Dermatophilus congolensis small subunit ribosomal RNA sequence
352 gi|174273|gb|M59057|DEOSSRNA -12.100,5,gaaa 0 151 14 ccccg gaaa cgggg
353 >gi|470912|gb|M82693|DRIRRE05 Drimys aromatica 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
354 gi|470912|gb|M82693|DRIRRE05 -15.200,7,gtga 1 174 18 gtggagg gtga cctccac
355 >gi|470912|gb|M82693|DRIRRE05 Drimys aromatica 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
356 gi|470912|gb|M82693|DRIRRE05 -12.500,6,gtga 1 173 16 tggagg gtga cctcca
357 >gi|174363|gb|K01260|ECOPRM1 Escherichia coli 10sb (M1) RNA; the RNA component of RNase P
358 gi|174363|gb|K01260|ECOPRM1 -12.000,5,gcaa 0 152 14 cccgc gcaa gcggg
359 >gi|174493|gb|M59388|ELERR18S E.cuneatus 18S ribosomal RNA
360 gi|174493|gb|M59388|ELERR18S -13.300,6,gaaa 0 728 16 gtcgcc gaaa ggcgac
361 >gi|174566|gb|M62683|FIBRR16SB Fibrobacter succinogenes succinogenes (strain A3C) 16S ribosomal RNA
362 gi|174566|gb|M62683|FIBRR16SB -12.900,6,gttc 0 814 16 ccgggg gttc ccccgg
363 >gi|174566|gb|M62683|FIBRR16SB Fibrobacter succinogenes succinogenes (strain A3C) 16S ribosomal RNA
364 gi|174566|gb|M62683|FIBRR16SB -12.900,6,gaac 1 829 16 ccgggg gaac ccccgg
365 >gi|174567|gb|M62684|FIBRR16SC Fibrobacter succinogenes succinogenes (strain B1) 16S ribosomal RNA
366 gi|174567|gb|M62684|FIBRR16SC -12.900,6,gttc 0 810 16 ccgggg gttc ccccgg
367 >gi|174567|gb|M62684|FIBRR16SC Fibrobacter succinogenes succinogenes (strain B1) 16S ribosomal RNA
368 gi|174567|gb|M62684|FIBRR16SC -12.900,6,gaac 1 825 16 ccgggg gaac ccccgg
369 >gi|174568|gb|M62685|FIBRR16SD Fibrobacter succinogenes succinogenes (strain BL2) 16S ribosomal RNA
370 gi|174568|gb|M62685|FIBRR16SD -12.900,6,gttc 0 810 16 ccgggg gttc ccccgg
371 >gi|174568|gb|M62685|FIBRR16SD Fibrobacter succinogenes succinogenes (strain BL2) 16S ribosomal RNA
372 gi|174568|gb|M62685|FIBRR16SD -12.900,6,gaac 1 825 16 ccgggg gaac ccccgg
373 >gi|174570|gb|M62687|FIBRR16SF Fibrobacter intestinalis (strain DR7) 16S ribosomal RNA
374 gi|174570|gb|M62687|FIBRR16SF -13.900,6,gcga 0 816 16 cccggg gcga cccggg
375 >gi|174572|gb|M62689|FIBRR16SH Fibrobacter succinogenes (strain HM2) 16S ribosomal RNA
376 gi|174572|gb|M62689|FIBRR16SH -12.200,6,ttcg 0 809 16 ccgggg ttcg ccccgg
377 >gi|174573|gb|M62690|FIBRR16SI Fibrobacter intestinalis (strain JG1) 16S ribosomal RNA
378 gi|174573|gb|M62690|FIBRR16SI -13.900,6,gcga 0 816 16 cccggg gcga cccggg
379 >gi|174574|gb|M62691|FIBRR16SJ Fibrobacter intestinalis (strain LH1) 16S ribosomal RNA
380 gi|174574|gb|M62691|FIBRR16SJ -13.900,6,gcga 0 816 16 cccggg gcga cccggg
381 >gi|174576|gb|M62693|FIBRR16SL Fibrobacter succinogenes (strain MC1) 16S ribosomal RNA
382 gi|174576|gb|M62693|FIBRR16SL -12.100,6,acat 0 168 16 ccccgg acat ccgggg
383 >gi|174576|gb|M62693|FIBRR16SL Fibrobacter succinogenes (strain MC1) 16S ribosomal RNA
384 gi|174576|gb|M62693|FIBRR16SL -12.200,6,ttcg 0 808 16 ccgggg ttcg ccccgg
385 >gi|174576|gb|M62693|FIBRR16SL Fibrobacter succinogenes (strain MC1) 16S ribosomal RNA
386 gi|174576|gb|M62693|FIBRR16SL -12.100,6,atgt 1 183 16 ccccgg atgt ccgggg
387 >gi|174579|gb|M62696|FIBRR16SO Fibrobacter succinogenes (strain S85) 16S ribosomal RNA
388 gi|174579|gb|M62696|FIBRR16SO -12.900,6,gttc 0 811 16 ccgggg gttc ccccgg
389 >gi|174579|gb|M62696|FIBRR16SO Fibrobacter succinogenes (strain S85) 16S ribosomal RNA
390 gi|174579|gb|M62696|FIBRR16SO -12.900,6,gaac 1 826 16 ccgggg gaac ccccgg
391 >gi|174591|gb|M59231|FLXRR16S Flexistipes sinusarabici small subunit rRNA
392 gi|174591|gb|M59231|FLXRR16S -13.600,6,ttcg 0 76 16 cctccc ttcg gggagg
393 >gi|174592|gb|L11306|FRARRDX Frankia sp. 16S ribosomal RNA
394 gi|174592|gb|L11306|FRARRDX -12.100,5,gaaa 0 143 14 cccgg gaaa ccggg
395 >gi|174596|gb|M97575|FSARREE Petromyzon marinus 18S ribosomal RNA (18S rRNA), 5' end
396 gi|174596|gb|M97575|FSARREE -12.500,6,gcga 0 1714 16 gggcag gcga ctgccc
397 >gi|174670|gb|M91611|GAORRITSA Gastrosuillus laricinus ribosomal RNA internal transcribed spacer
398 gi|174670|gb|M91611|GAORRITSA -13.100,6,gcga 0 89 16 cgcggg gcga cccgcg
399 >gi|174671|gb|M91612|GAORRITSB Gastrosuillus luricinus ribosomal RNA internal transcribed spacer
400 gi|174671|gb|M91612|GAORRITSB -13.100,6,gcga 0 105 16 cgcggg gcga cccgcg
401 >gi|695346|gb|L36199|HBMRRDM Heliobacillus mobilis 16S ribosomal RNA (16S rRNA)
402 gi|695346|gb|L36199|HBMRRDM -13.800,6,gaaa 0 152 16 cagccc gaaa gggctg
403 >gi|174809|gb|M37643|HECRR16SB Helicobacter felis 16S rRNA
404 gi|174809|gb|M37643|HECRR16SB -12.700,7,gaaa 0 962 18 tccccta gaaa tagggga
405 >gi|174838|gb|L04675|HLO16SRRNA Heliothrix oregonensis 16S ribosomal RNA (16S rRNA), partial rRNA
406 gi|174838|gb|L04675|HLO16SRRNA -12.800,5,gaaa 1 38 14 ccccc gaaa ggggg
407 >gi|174913|gb|M23820|HUMRRAUA Human U5-A ribosomal RNA
408 gi|174913|gb|M23820|HUMRRAUA -12.500,7,cttg 0 101 18 gccttgc cttg gcaaggc
409 >gi|174913|gb|M23820|HUMRRAUA Human U5-A ribosomal RNA
410 gi|174913|gb|M23820|HUMRRAUA -12.500,7,caag 1 118 18 gccttgc caag gcaaggc
411 >gi|174944|gb|K00472|HUMURU4B Human U4b small nuclear RNA (snRNA)
412 gi|174944|gb|K00472|HUMURU4B -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
413 >gi|174959|gb|M32851|HYM28SRRNA Hymenochirus curtipes 28S ribosomal RNA, complete
414 gi|174959|gb|M32851|HYM28SRRNA -13.300,7,cgcg 0 335 18 agccgcg cgcg cgcggct
415 >gi|174959|gb|M32851|HYM28SRRNA Hymenochirus curtipes 28S ribosomal RNA, complete
416 gi|174959|gb|M32851|HYM28SRRNA -13.300,7,cgcg 1 352 18 agccgcg cgcg cgcggct
417 >gi|175002|gb|M97573|LARRREC Lampetra aepyptera 18S ribosomal RNA (18S rRNA), 5' end
418 gi|175002|gb|M97573|LARRREC -12.500,6,gcga 0 1714 16 gggcag gcga ctgccc
419 >gi|471872|gb|M82532|LAURRE05 Lactuca sativa 18S ribosomal RNA (18S rRNA), ca. bp 1205 to 1414 in mature rRNA
420 gi|471872|gb|M82532|LAURRE05 -12.200,7,gata 1 172 18 gtggagg gata cctccac
421 >gi|175039|gb|M23727|LBARRNAV L.vitulinus 16S ribosomal RNA small subunit
422 gi|175039|gb|M23727|LBARRNAV -13.400,6,gaga 0 1000 16 gggacg gaga cgtccc
423 >gi|175044|gb|M23729|LBARRNAZ L.catenaforme 16S ribosomal RNA small subunit
424 gi|175044|gb|M23729|LBARRNAZ -15.700,7,gaga 0 1000 18 tcgcgcg gaga cgcgcga
425 >gi|175044|gb|M23729|LBARRNAZ L.catenaforme 16S ribosomal RNA small subunit
426 gi|175044|gb|M23729|LBARRNAZ -13.800,6,gaga 0 1001 16 cgcgcg gaga cgcgcg
427 >gi|471885|gb|M82539|LIQRRE05 Liquidambar styraciflua 18S ribosomal RNA (18S rRNA), ca. bp 1205 to 1414 in mature rRNA
428 gi|471885|gb|M82539|LIQRRE05 -12.200,7,gtca 1 172 18 gtggagg gtca cctccac
429 >gi|175140|gb|M58822|LISRR16ST Listeria monocytogenes 16S ribosomal RNA
430 gi|175140|gb|M58822|LISRR16ST -13.300,6,gaaa 0 153 16 ctccgg gaaa ccggag
431 >gi|951043|gb|L33974|LTTRRD Leptothrix discophora (strain SP-6) 16S ribosomal RNA (16S rRNA)
432 gi|951043|gb|L33974|LTTRRD -12.000,5,gaaa 0 135 14 ccggc gaaa gccgg
433 >gi|504534|gb|L33979|LTTRRDB Leptothrix cholodnii (strain LMG 7171) 16S ribosomal RNA (16S rRNA)
434 gi|504534|gb|L33979|LTTRRDB -12.000,5,gaaa 0 135 14 ccggc gaaa gccgg
435 >gi|504535|gb|L33981|LTTRRDC Leptothrix sp. (strain NC-1) 16S ribosomal RNA (16S rRNA)
436 gi|504535|gb|L33981|LTTRRDC -12.000,5,gaaa 0 135 14 ccggc gaaa gccgg
437 >gi|308922|gb|L10943|MABRRI Marine Eubacterial sp. (aggregate agg27) PCR generated ribosomal RNA fragment
438 gi|308922|gb|L10943|MABRRI -12.100,7,acat 0 81 18 gggagag acat ctctccc
439 >gi|308922|gb|L10943|MABRRI Marine Eubacterial sp. (aggregate agg27) PCR generated ribosomal RNA fragment
440 gi|308922|gb|L10943|MABRRI -12.100,7,atgt 1 98 18 gggagag atgt ctctccc
441 >gi|175375|gb|M95654|MTBRRDB Methylobacterium sp. 16S ribosomal RNA
442 gi|175375|gb|M95654|MTBRRDB -12.600,7,cttg 0 776 18 tggcctg cttg caggcca
443 >gi|175375|gb|M95654|MTBRRDB Methylobacterium sp. 16S ribosomal RNA
444 gi|175375|gb|M95654|MTBRRDB -12.600,7,caag 1 793 18 tggcctg caag caggcca
445 >gi|175376|gb|M95655|MTBRRDC Methylobacterium sp. 16S ribosomal RNA
446 gi|175376|gb|M95655|MTBRRDC -12.600,7,cttg 0 776 18 tggcctg cttg caggcca
447 >gi|175376|gb|M95655|MTBRRDC Methylobacterium sp. 16S ribosomal RNA
448 gi|175376|gb|M95655|MTBRRDC -12.600,7,caag 1 793 18 tggcctg caag caggcca
449 >gi|175408|gb|M14414|MUSRRMA Mouse 5.4S ribosomal small nuclear RNA
450 gi|175408|gb|M14414|MUSRRMA -14.000,6,gaaa 1 44 16 ccctcc gaaa ggaggg
451 >gi|175433|gb|M10328|MUSUR57S Mouse 5.7S U4 small nuclear RNA type a
452 gi|175433|gb|M10328|MUSUR57S -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
453 >gi|175434|gb|M18004|MUSUR57T Mouse 5.7S U4 small nuclear RNA type b
454 gi|175434|gb|M18004|MUSUR57T -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
455 >gi|175446|gb|M59126|MVORR16SY Methanococcus jannaschii 16S ribosomal RNA
456 gi|175446|gb|M59126|MVORR16SY -13.700,6,ttcg 0 65 16 gctccc ttcg gggagc
457 >gi|175555|gb|L06168|NGORR16SB Neisseria flavescens 16S ribosomal RNA
458 gi|175555|gb|L06168|NGORR16SB -13.300,6,gaga 0 1005 16 cctccg gaga cggagg
459 >gi|294001|gb|L16523|NYSRR23S Nyssa sativa 26S ribosomal RNA
460 gi|294001|gb|L16523|NYSRR23S -15.200,7,gaaa 0 88 18 gccagag gaaa ctctggc
461 >gi|175717|gb|M59064|PSERR16SB Pseudomonas diminuta 16S ribosomal RNA
462 gi|175717|gb|M59064|PSERR16SB -13.200,6,gaga 0 950 16 gccacg gaga cgtggc
463 >gi|472129|gb|M82490|PTNRRE04 Platanus occidentalis 18S ribosomal RNA (18S rRNA), ca. bp 1207 to 1414 in mature rRNA
464 gi|472129|gb|M82490|PTNRRE04 -12.200,7,gtca 1 170 18 gtggagg gtca cctccac
465 >gi|294428|gb|L16474|PVORR16SJ Prevotella oris (ATCC 33573) 16S ribosomal RNA
466 gi|294428|gb|L16474|PVORR16SJ -12.100,7,cttg 0 78 18 ggggaag cttg cttcccc
467 >gi|294428|gb|L16474|PVORR16SJ Prevotella oris (ATCC 33573) 16S ribosomal RNA
468 gi|294428|gb|L16474|PVORR16SJ -12.100,7,caag 1 95 18 ggggaag caag cttcccc
469 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
470 gi|408945|gb|L19921|PYWRRDX -13.400,7,ttct 0 48 18 gcgtccc ttct gggacgc
471 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
472 gi|408945|gb|L19921|PYWRRDX -12.900,6,gtac 0 603 16 ccgggg gtac ccccgg
473 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
474 gi|408945|gb|L19921|PYWRRDX -14.100,7,gctc 0 1066 18 ccctccc gctc gggaggg
475 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
476 gi|408945|gb|L19921|PYWRRDX -14.100,7,gagc 1 1083 18 ccctccc gagc gggaggg
477 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
478 gi|408945|gb|L19921|PYWRRDX -12.900,6,gtac 1 618 16 ccgggg gtac ccccgg
479 >gi|408945|gb|L19921|PYWRRDX Pyrococcus abyssi 16S ribosomal RNA
480 gi|408945|gb|L19921|PYWRRDX -12.900,7,agaa 1 65 18 gcgtccc agaa gggacgc
481 >gi|472171|gb|M82511|RACRRE05 Ranunculus acris 18S ribosomal RNA (18S rRNA), ca. bp 1203 to 1414 in mature rRNA
482 gi|472171|gb|M82511|RACRRE05 -12.200,7,ggta 1 174 18 gtggagg ggta cctccac
483 >gi|175815|gb|M11057|RATUR8 Rat U8 small nuclear RNA from Novikoff hepatoma cells
484 gi|175815|gb|M11057|RATUR8 -14.000,6,gaaa 1 43 16 ccctcc gaaa ggaggg
485 >gi|175816|gb|K00477|RATURU4A Rat U4a small nuclear RNA (snRNA)
486 gi|175816|gb|K00477|RATURU4A -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
487 >gi|175817|gb|K00478|RATURU4B Rat U4b small nuclear RNA (snRNA)
488 gi|175817|gb|K00478|RATURU4B -12.000,7,tacg 0 128 18 cagtctc tacg gagactg
489 >gi|175851|gb|M91613|RHSRRITSA Rhizopogon subcaerulescens ribosomal RNA internal transcribed spacer
490 gi|175851|gb|M91613|RHSRRITSA -12.800,7,tcgc 0 40 18 gcctcgc tcgc gcgaggc
491 >gi|175851|gb|M91613|RHSRRITSA Rhizopogon subcaerulescens ribosomal RNA internal transcribed spacer
492 gi|175851|gb|M91613|RHSRRITSA -16.100,7,gcga 1 57 18 gcctcgc gcga gcgaggc
493 >gi|175851|gb|M91613|RHSRRITSA Rhizopogon subcaerulescens ribosomal RNA internal transcribed spacer
494 gi|175851|gb|M91613|RHSRRITSA -12.700,6,gcga 1 56 16 cctcgc gcga gcgagg
495 >gi|294741|gb|L15196|ROLRR18S Roridula gorgonias 18S ribosomal RNA
496 gi|294741|gb|L15196|ROLRR18S -12.200,7,gtca 1 628 18 gtggagg gtca cctccac
497 >gi|175876|gb|M59069|RSPRR16SD Rhodospirillum salinarum 16S ribosomal RNA
498 gi|175876|gb|M59069|RSPRR16SD -16.700,7,gaga 0 953 18 gcctcgg gaga ccgaggc
499 >gi|175876|gb|M59069|RSPRR16SD Rhodospirillum salinarum 16S ribosomal RNA
500 gi|175876|gb|M59069|RSPRR16SD -13.300,6,gaga 0 954 16 cctcgg gaga ccgagg
501 >gi|175876|gb|M59069|RSPRR16SD Rhodospirillum salinarum 16S ribosomal RNA
502 gi|175876|gb|M59069|RSPRR16SD -12.300,7,tctc 1 970 18 gcctcgg tctc ccgaggc
503 >gi|457377|gb|L25709|SGBRRNA Solemya reidi gill symbiont ribosomal RNA
504 gi|457377|gb|L25709|SGBRRNA -13.900,6,gaaa 0 140 16 cctggg gaaa cccagg
505 >gi|175944|gb|M32848|SIL28SRRNA Silurana tropicalis 28S ribosomal RNA, complete
506 gi|175944|gb|M32848|SIL28SRRNA -13.000,6,gcgc 0 341 16 gccggg gcgc cccggc
507 >gi|175944|gb|M32848|SIL28SRRNA Silurana tropicalis 28S ribosomal RNA, complete
508 gi|175944|gb|M32848|SIL28SRRNA -13.000,6,gcgc 1 356 16 gccggg gcgc cccggc
509 >gi|175988|gb|M88722|SPARR16SB Spirochaeta halophila 16S ribosomal RNA
510 gi|175988|gb|M88722|SPARR16SB -12.800,6,ttcg 0 2 16 cgtccc ttcg gggacg
511 >gi|176013|gb|M62707|SPNRR18SA Sphaeromonas communis (strain FG) 18S ribosomal RNA
512 gi|176013|gb|M62707|SPNRR18SA -12.700,7,gcaa 0 183 18 aacctgg gcaa ccaggtt
513 >gi|176061|gb|M91614|SUIRRITSA Suillus grevillei ribosomal RNA internal transcribed spacer
514 gi|176061|gb|M91614|SUIRRITSA -13.100,6,gcga 0 105 16 cgcggg gcga cccgcg
515 >gi|176062|gb|M91615|SUIRRITSB Suillus grevillei ribosomal RNA internal transcribed spacer
516 gi|176062|gb|M91615|SUIRRITSB -13.100,6,gcga 0 105 16 cgcggg gcga cccgcg
517 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
518 gi|176197|gb|M67497|THCLRRNA -16.600,7,gaaa 0 263 18 ctccggg gaaa cccggag
519 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
520 gi|176197|gb|M67497|THCLRRNA -14.000,6,gaaa 0 264 16 tccggg gaaa cccgga
521 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
522 gi|176197|gb|M67497|THCLRRNA -12.100,5,gaaa 0 265 14 ccggg gaaa cccgg
523 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
524 gi|176197|gb|M67497|THCLRRNA -13.100,6,gaaa 0 1004 16 ggggga gaaa tccccc
525 >gi|176197|gb|M67497|THCLRRNA T.celer 23S ribosomal RNA gene sequence
526 gi|176197|gb|M67497|THCLRRNA -12.200,7,tttc 1 280 18 ctccggg tttc cccggag
527 >gi|176199|gb|M21529|THCRRD T.celer 16S ribosomal RNA
528 gi|176199|gb|M21529|THCRRD -12.900,7,ggaa 0 1455 18 ccgtagg ggaa cctacgg
529 >gi|176219|gb|M67498|TMORRNAA Thermotoga maritima large subunit ribosomal RNA, complete
530 gi|176219|gb|M67498|TMORRNAA -12.000,5,gaaa 0 152 14 ccgcc gaaa ggcgg
531 >gi|176219|gb|M67498|TMORRNAA Thermotoga maritima large subunit ribosomal RNA, complete
532 gi|176219|gb|M67498|TMORRNAA -13.700,6,ttcg 0 1615 16 ggtccc ttcg gggacc
533 >gi|176254|gb|M57738|TRPRRDSB Treponema succinifaciens 16S rRNA
534 gi|176254|gb|M57738|TRPRRDSB -16.400,7,gaga 0 1036 18 ccgcctg gaga caggcgg
535 >gi|176254|gb|M57738|TRPRRDSB Treponema succinifaciens 16S rRNA
536 gi|176254|gb|M57738|TRPRRDSB -13.100,6,gaga 0 1037 16 cgcctg gaga caggcg
537 >gi|176254|gb|M57738|TRPRRDSB Treponema succinifaciens 16S rRNA
538 gi|176254|gb|M57738|TRPRRDSB -12.000,7,tctc 1 1053 18 ccgcctg tctc caggcgg
539 >gi|176257|gb|M59294|TRPSSRNAA Treponema sp. small subunit ribosomal RNA
540 gi|176257|gb|M59294|TRPSSRNAA -12.800,7,gaga 0 1026 18 tcgcatg gaga catgcga
541 >gi|1220551|gb|L27800|TRRBRDNAA Trichoderma reesei 5.8S ribosomal DNA (5.8S rDNA)
542 gi|1220551|gb|L27800|TRRBRDNAA -12.500,7,tatt 0 118 18 ccgccag tatt ctggcgg
543 >gi|1220551|gb|L27800|TRRBRDNAA Trichoderma reesei 5.8S ribosomal DNA (5.8S rDNA)
544 gi|1220551|gb|L27800|TRRBRDNAA -12.100,7,aata 1 135 18 ccgccag aata ctggcgg
545 >gi|603469|gb|L26520|TRWERRNAA Trypetesa lampas 18S ribosomal RNA (18S rRNA)
546 gi|603469|gb|L26520|TRWERRNAA -13.100,6,gaaa 1 818 16 caggcg gaaa cgcctg
547 >gi|176260|gb|M35966|TTERRDA T.tenax 16S rRNA
548 gi|176260|gb|M35966|TTERRDA -13.900,7,ggcg 0 63 18 cgcccgg ggcg ccgggcg
549 >gi|176260|gb|M35966|TTERRDA T.tenax 16S rRNA
550 gi|176260|gb|M35966|TTERRDA -13.200,7,cgcc 1 80 18 cgcccgg cgcc ccgggcg
551 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
552 gi|603470|gb|L26521|ULOERRNAA -12.500,7,tcac 0 225 18 cgtgccc tcac gggcacg
553 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
554 gi|603470|gb|L26521|ULOERRNAA -14.400,7,tgaa 0 1785 18 ccgcagg tgaa cctgcgg
555 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
556 gi|603470|gb|L26521|ULOERRNAA -12.900,7,ttca 1 1802 18 ccgcagg ttca cctgcgg
557 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
558 gi|603470|gb|L26521|ULOERRNAA -16.300,7,gtga 1 242 18 cgtgccc gtga gggcacg
559 >gi|603470|gb|L26521|ULOERRNAA Ulophysema oeresundense 18S ribosomal RNA (18S rRNA)
560 gi|603470|gb|L26521|ULOERRNAA -13.900,6,gtga 1 241 16 gtgccc gtga gggcac
561 >gi|475134|gb|M82432|ZAMRREA02 Zamia ottonis 18S ribosomal RNA (18S rRNA), ca. bp 234 to 287 in mature rRNA
562 gi|475134|gb|M82432|ZAMRREA02 -12.200,7,gata 1 172 18 gtggagg gata cctccac