t/data/hmmpfam_cs.out

   1 hmmpfam - search one or more sequences against HMM database
   2 HMMER 2.3.2 (Oct 2003)
   3 Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
   4 Freely distributed under the GNU General Public License (GPL)
   5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
   6 HMM file:                 ../Shared/Pfam_fs
   7 Sequence file:            single_porphyra_AA.fa
   8 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
   9
  10 Query sequence: gi|90819130|dbj|BAE92499.1|
  11 Accession:      [none]
  12 Description:    glutamate synthase [Porphyra yezoensis]
  13
  14 Scores for sequence family classification (score includes all domains):
  15 Model           Description                             Score    E-value  N
  16 --------        -----------                             -----    ------- ---
  17 Glu_synthase    Conserved region in glutamate synthas   858.6   3.6e-255   2
  18 GATase_2        Glutamine amidotransferases class-II    731.8   3.9e-226   1
  19 Glu_syn_central Glutamate synthase central domain       649.1   7.9e-213   1
  20 GXGXG           GXGXG motif                             367.3   2.7e-107   1
  21 HdeA            hns-dependent expression protein A (H     9.6      0.015   1
  22 GDC-P           Glycine cleavage system P-protein         7.1      0.086   1
  23 Cache_1         Cache domain                              7.0       0.14   1
  24 IBN_N           Importin-beta N-terminal domain           8.2       0.17   1
  25 DUF1200         Protein of unknown function (DUF1200)     6.7       0.42   1
  26 cobW            CobW/HypB/UreG, nucleotide-binding do     5.1       0.45   1
  27 PUF             Pumilio-family RNA binding repeat         6.5       0.47   1
  28 Arch_flagellin  Archaebacterial flagellin                 4.1       0.66   1
  29 FMN_dh          FMN-dependent dehydrogenase               3.2       0.89   1
  30 RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4             4.6        1.4   1
  31 DUF477          Domain of unknown function (DUF477)       3.8        1.7   1
  32 FRG1            FRG1-like family                          0.2        1.7   1
  33 DUF1393         Protein of unknown function (DUF1393)     3.1          2   1
  34 tRNA_anti       OB-fold nucleic acid binding domain       4.9          2   1
  35 SelT            Selenoprotein T                           3.1        2.2   1
  36 RNase_PH_C      3' exoribonuclease family, domain 2       4.2        2.3   1
  37 Pencillinase_R  Penicillinase repressor                   3.9        2.5   1
  38 Hormone_4       Neurohypophysial hormones, N-terminal     4.4        2.5   1
  39 DSRB            Dextransucrase DSRB                       2.7        2.7   1
  40 FtsK_SpoIIIE    FtsK/SpoIIIE family                       2.6        3.1   1
  41 UBA             UBA/TS-N domain                           4.2        3.1   1
  42 DUF1981         Domain of unknown function (DUF1981)      3.6        3.3   1
  43 Gla             Vitamin K-dependent carboxylation/gam     4.0        3.5   1
  44 Scm3            Centromere protein Scm3                   2.2        3.5   1
  45 Ribosomal_S6    Ribosomal protein S6                      3.3        3.7   1
  46 Cystatin        Cystatin domain                           2.4        3.9   1
  47 Phage_prot_Gp6  Phage portal protein, SPP1 Gp6-like       1.0          4   1
  48 DUF1976         Domain of unknown function (DUF1976)     -1.5        4.3   1
  49 DUF37           Domain of unknown function DUF37          3.0        4.5   1
  50 Flavodoxin_NdrI NrdI Flavodoxin like                      2.1        4.6   1
  51 Bac_rhodopsin   Bacteriorhodopsin                         0.9        4.9   1
  52 Nitro_FeMo-Co   Dinitrogenase iron-molybdenum cofacto     2.1        5.3   1
  53 MoCF_biosynth   Probable molybdopterin binding domain     1.3        5.6   1
  54 PaaA_PaaC       Phenylacetic acid catabolic protein       0.4        5.6   1
  55 Albicidin_res   Albicidin resistance domain               1.7        5.7   1
  56 DUF1514         Protein of unknown function (DUF1514)     3.5        5.7   1
  57 T5orf172        T5orf172 domain                           2.0        6.1   1
  58 Nup133_N        Nup133 N terminal like                   -0.6        6.5   1
  59 BicD            Microtubule-associated protein Bicaud    -1.6        6.8   1
  60 Sel1            Sel1 repeat                               2.5          7   1
  61 CAP_C           DE   Adenylate cyclase associated (CA     1.3        7.4   1
  62 Colicin         Colicin pore forming domain               1.4        7.5   1
  63 MADF_DNA_bdg    Alcohol dehydrogenase transcription f     1.8        8.2   1
  64 DUF258          Protein of unknown function, DUF258       0.3        8.3   1
  65 PspB            Phage shock protein B                     0.4        8.4   1
  66 GspM            General secretion pathway, M protein      1.0        8.6   1
  67 Coq4            Coenzyme Q (ubiquinone) biosynthesis     -0.3        9.1   1
  68 P22_AR_N        P22_AR N-terminal domain                 -0.2        9.5   1
  69 C1_2            C1 domain                                 1.1        9.6   1
  70 Phage_Mu_P      Bacteriophage Mu P protein               -0.4         10   1
  71
  72 Parsed for domains:
  73 Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
  74 --------        ------- ----- -----    ----- -----      -----  -------
  75 GATase_2          1/1      34   404 ..     1   385 []   731.8 3.9e-226
  76 FRG1              1/1      88   107 ..   151   173 ..     0.2      1.7
  77 C1_2              1/1     191   210 ..     9    27 ..     1.1      9.6
  78 MADF_DNA_bdg      1/1     235   261 ..    57    95 .]     1.8      8.2
  79 PaaA_PaaC         1/1     258   269 ..     1    13 [.     0.4      5.6
  80 Albicidin_res     1/1     274   289 ..    50    65 ..     1.7      5.7
  81 UBA               1/1     311   331 ..    18    38 .]     4.2      3.1
  82 Gla               1/1     342   357 ..    27    42 .]     4.0      3.5
  83 RNA_pol_Rpb2_4    1/1     369   381 ..     1    13 [.     4.6      1.4
  84 MoCF_biosynth     1/1     371   396 ..    23    49 ..     1.3      5.6
  85 DUF1200           1/1     389   401 ..     1    13 [.     6.7     0.42
  86 Nup133_N          1/1     397   419 ..   475   498 .]    -0.6      6.5
  87 DUF1976           1/1     428   448 ..  1296  1319 .]    -1.5      4.3
  88 Bac_rhodopsin     1/1     445   472 ..   219   250 .]     0.9      4.9
  89 Coq4              1/1     459   481 ..    60    82 ..    -0.3      9.1
  90 Glu_syn_central   1/1     478   773 ..     1   301 []   649.1 7.9e-213
  91 Flavodoxin_NdrI   1/1     488   497 ..   122   131 .]     2.1      4.6
  92 P22_AR_N          1/1     524   541 ..   110   126 .]    -0.2      9.5
  93 Cache_1           1/1     537   557 ..     1    23 [.     7.0     0.14
  94 Glu_synthase      1/2     650   676 ..   297   323 ..     1.3        3
  95 HdeA              1/1     727   749 ..    58    79 .]     9.6    0.015
  96 Sel1              1/1     729   745 ..    32    49 .]     2.5        7
  97 DUF1981           1/1     765   787 ..    62    88 .]     3.6      3.3
  98 tRNA_anti         1/1     818   839 ..    54    85 .]     4.9        2
  99 Cystatin          1/1     826   859 ..     1    38 [.     2.4      3.9
 100 RNase_PH_C        1/1     827   846 ..    64    84 .]     4.2      2.3
 101 Glu_synthase      2/2     830  1216 ..     1   412 []   857.3   9e-255
 102 DUF258            1/1     839   860 ..   282   305 .]     0.3      8.3
 103 Pencillinase_R    1/1     856   894 ..    84   118 .]     3.9      2.5
 104 SelT              1/1     872   885 ..    96   111 .]     3.1      2.2
 105 Nitro_FeMo-Co     1/1     879   897 ..    87   105 .]     2.1      5.3
 106 DUF37             1/1     927   934 ..    61    68 .]     3.0      4.5
 107 Scm3              1/1     953   963 ..   103   113 .]     2.2      3.5
 108 cobW              1/1    1038  1058 ..   202   222 .]     5.1     0.45
 109 Arch_flagellin    1/1    1050  1072 ..   197   219 .]     4.1     0.66
 110 DUF1393           1/1    1055  1068 ..     1    14 [.     3.1        2
 111 FtsK_SpoIIIE      1/1    1107  1143 ..   163   198 ..     2.6      3.1
 112 FMN_dh            1/1    1109  1148 ..   291   330 ..     3.2     0.89
 113 DSRB              1/1    1120  1134 ..     1    16 [.     2.7      2.7
 114 Phage_Mu_P        1/1    1122  1131 ..     1    10 [.    -0.4       10
 115 Hormone_4         1/1    1168  1176 ..     1     9 []     4.4      2.5
 116 GDC-P             1/1    1205  1225 ..    10    30 ..     7.1    0.086
 117 PspB              1/1    1268  1276 ..     1     9 [.     0.4      8.4
 118 T5orf172          1/1    1271  1293 ..    35    58 ..     2.0      6.1
 119 CAP_C             1/1    1283  1292 ..   161   170 .]     1.3      7.4
 120 GXGXG             1/1    1290  1485 ..     1   228 []   367.3 2.7e-107
 121 DUF1514           1/1    1453  1469 ..    50    66 .]     3.5      5.7
 122 Colicin           1/1    1456  1467 ..   192   203 .]     1.4      7.5
 123 Ribosomal_S6      1/1    1461  1481 ..    16    36 ..     3.3      3.7
 124 BicD              1/1    1465  1481 ..     1    17 [.    -1.6      6.8
 125 PUF               1/1    1470  1486 ..    19    35 .]     6.5     0.47
 126 DUF477            1/1    1472  1495 ..     1    24 [.     3.8      1.7
 127 Phage_prot_Gp6    1/1    1479  1492 ..     1    14 [.     1.0        4
 128 IBN_N             1/1    1498  1516 ..     1    20 [.     8.2     0.17
 129 GspM              1/1    1506  1520 ..     1    15 [.     1.0      8.6
 130
 131 Alignments of top-scoring domains:
 132 GATase_2: domain 1 of 1, from 34 to 404: score 731.8, E = 3.9e-226
 133                 CS    EEEEEEEEETSSHSBHHHHHHHHHHHHHGGGGSSCSTTSSCECEEEE
 134                    *->CGvlGfiAhikgkpshkivedaleaLerLeHRGavgADgktGDGAGI
 135                       CGv GfiA+ ++ ++hkiv +aleaL+++eHRGa++AD ++GDGAGI
 136   gi|9081913    34    CGV-GFIADVNNVANHKIVVQALEALTCMEHRGACSADRDSGDGAGI 79
 137
 138                 CS EEECTCCCHHHHHHHCT----S GC-EEEEEEE-SSHHHHHHHHHHHHHH
 139                    ltqiPdgFFrevakelGieLpe.gqYAVGmvFLPqdelaraearkifEki
 140                     t+iP+++F++  ++++i++ ++   +VGm+FLP   l+    + i+E +
 141   gi|9081913    80 TTAIPWNLFQKSLQNQNIKFEQnDSVGVGMLFLPAHKLKES--KLIIETV 127
 142
 143                 CS HHHTT-EEEEEEE--B-GGGS-HHHHHC--EEEEEEEE-TT--HHHHHHC
 144                    aeeeGLeVLGWReVPvnnsvLGetAlatePvIeQvFvgapsgdgedfErr
 145                    ++ee+Le++GWR VP+  +vLG++A  + P++eQvF+ +++ +++ +E++
 146   gi|9081913   128 LKEENLEIIGWRLVPTVQEVLGKQAYLNKPHVEQVFCKSSNLSKDRLEQQ 177
 147
 148                 CS EEEEECHSCHHHHTHHH.    BEEEEEESSEEEEEECC-GGGHHHHBHG
 149                    LyviRkrieksivaenvn....fYiCSLSsrTIVYKGMLtseQLgqFYpD
 150                    L+++Rk+iek+i+  + +  ++fYiCSLS++TIVYKGM++s++LgqFY+D
 151   gi|9081913   178 LFLVRKKIEKYIGINGKDwaheFYICSLSCYTIVYKGMMRSAVLGQFYQD 227
 152
 153                 CS GGSTTEEBSEEEEEECESSSSSCTGGGSSCEEECCCTTCEEEEEEEEETT
 154                    LqderfeSalAivHsRFSTNTfPsWplAQPfRVnslwgggivlAHNGEIN
 155                    L++++++S++Ai+H+RFSTNT+P+WplAQP+R         ++ HNGEIN
 156   gi|9081913   228 LYHSEYTSSFAIYHRRFSTNTMPKWPLAQPMR---------FVSHNGEIN 268
 157
 158                 CS THHHHHHHHHHTSCCCSSTTCGHHHHCC-SSS-TTSCHHHHHHHHHHHHH
 159                    TlrgNrnwMraRegvlksplFgddldkLkPIvneggSDSaalDnvlEllv
 160                    Tl gN nwM++Re +l+s++++d++++LkPI n+++SDSa+lD ++Ell+
 161   gi|9081913   269 TLLGNLNWMQSREPLLQSKVWKDRIHELKPITNKDNSDSANLDAAVELLI 318
 162
 163                 CS HTT--HHHHHHHHS----TT-GGGTST-HHHHHHHHHHHHHHCCHCCEEE
 164                    raGRslpeAlMMlIPEAWqnnpdmdkdrpekraFYeylsglmEPWDGPAa
 165                    ++GRs++eAlM+l+PEA+qn+pd   +++e+ +FYey+sgl+EPWDGPA+
 166   gi|9081913   319 ASGRSPEEALMILVPEAFQNQPDFA-NNTEISDFYEYYSGLQEPWDGPAL 367
 167
 168                 CS EEEETSSEEEEEEETTTSCESEEEEEEEEEE.TTEEEEEESSC
 169                    lvftDGryavgAtLDRNGLTRPaRygiTrdldkDglvvvaSEa<-*
 170                    +vft+G++ +gAtLDRNGL RPaRy+iT    kD+lv+v+SE+
 171   gi|9081913   368 VVFTNGKV-IGATLDRNGL-RPARYVIT----KDNLVIVSSES    404
 172
 173 FRG1: domain 1 of 1, from 88 to 107: score 0.2, E = 1.7
 174                    *->FQkfKvDLqdrklrinekDkkel<-*
 175                       FQk+   Lq+  +  +++D+ ++
 176   gi|9081913    88    FQKS---LQNQNIKFEQNDSVGV    107
 177
 178 C1_2: domain 1 of 1, from 191 to 210: score 1.1, E = 9.6
 179                    *->idgfyg...fYsCkkccddftl<-*
 180                       i+g+++ ++fY C+  c  +t+
 181   gi|9081913   191    INGKDWaheFYICSLSC--YTI    210
 182
 183 MADF_DNA_bdg: domain 1 of 1, from 235 to 261: score 1.8, E = 8.2
 184                    *->drYrrelrkirqgnsegsstgsgesykskWryyeelsFL<-*
 185                       +++  ++r+               ++ +kW+++  ++F
 186   gi|9081913   235    SSFAIYHRRFS------------TNTMPKWPLAQPMRFV    261
 187
 188 PaaA_PaaC: domain 1 of 1, from 258 to 269: score 0.4, E = 5.6
 189                 CS    X............
 190                    *->MYnFvEHGGvint<-*
 191                       M  Fv H G int
 192   gi|9081913   258    M-RFVSHNGEINT    269
 193
 194 Albicidin_res: domain 1 of 1, from 274 to 289: score 1.7, E = 5.7
 195                    *->LrlmharEPsLrkgtG<-*
 196                       L+ m+ rEP L+ +++
 197   gi|9081913   274    LNWMQSREPLLQSKVW    289
 198
 199 UBA: domain 1 of 1, from 311 to 331: score 4.2, E = 3.1
 200                 CS    HHHHHHHHHTTT-HHHHHHHH
 201                    *->eeakkALeatngnverAvewL<-*
 202                       ++a++ L a++ ++e+A+++L
 203   gi|9081913   311    DAAVELLIASGRSPEEALMIL    331
 204
 205 Gla: domain 1 of 1, from 342 to 357: score 4.0, E = 3.5
 206                 CS    CSSHHHHHHHHHHCTC
 207                    *->fednegtkefwrkYfg<-*
 208                       f++n+++  f++ Y g
 209   gi|9081913   342    FANNTEISDFYEYYSG    357
 210
 211 RNA_pol_Rpb2_4: domain 1 of 1, from 369 to 381: score 4.6, E = 1.4
 212                 CS    EEETTEEEEEESS
 213                    *->VYvNGklvGthrn<-*
 214                       V+ NGk++G + +
 215   gi|9081913   369    VFTNGKVIGATLD    381
 216
 217 MoCF_biosynth: domain 1 of 1, from 371 to 396: score 1.3, E = 5.6
 218                 CS    CHHHHHHHHHHHTTTCEEEEEEEE-SS
 219                    *->tNgpmLaalLresaGaevirygiVpDd<-*
 220                       tNg+ + a L +  G  ++ry+i +D+
 221   gi|9081913   371    TNGKVIGATLDR-NGLRPARYVITKDN    396
 222
 223 DUF1200: domain 1 of 1, from 389 to 401: score 6.7, E = 0.42
 224                    *->kYvltedtLlIks<-*
 225                       +Yv+t+d L+I+s
 226   gi|9081913   389    RYVITKDNLVIVS    401
 227
 228 Nup133_N: domain 1 of 1, from 397 to 419: score -0.6, E = 6.5
 229                    *->lylltrnsGvvrIeHaleedstne<-*
 230                       l++ + +sGvv++e +  + s  +
 231   gi|9081913   397    LVIVSSESGVVQVE-PGNVKSKGR    419
 232
 233 DUF1976: domain 1 of 1, from 428 to 448: score -1.5, E = 4.3
 234                    *->VsvYiyFkevtdnksLsEysVtyk<-*
 235                       V++++   ++++nk ++  sVt k
 236   gi|9081913   428    VDIFS--HKILNNKEIK-TSVTTK    448
 237
 238 Bac_rhodopsin: domain 1 of 1, from 445 to 472: score 0.9, E = 4.9
 239                 CS    HHHHHHHHHHHHHHHHHCHHHTC---------
 240                    *->vvAKVgFgfilLrsravlertvavgsalaage<-*
 241                       v++K+++g +l ++r++le  +   + l+++
 242   gi|9081913   445    VTTKIPYGELLTDARQILE--HK--PFLSDQQ    472
 243
 244 Coq4: domain 1 of 1, from 459 to 481: score -0.3, E = 9.1
 245                    *->rrILkEkPRissetldlkkLrkL<-*
 246                       r+IL  kP  s  ++d kkL +L
 247   gi|9081913   459    RQILEHKPFLSDQQVDIKKLMQL    481
 248
 249 Glu_syn_central: domain 1 of 1, from 478 to 773: score 649.1, E = 7.9e-213
 250                 CS    HHHHHHCTT--HHHHHCTCHHHHHHSS--EE-S---S--CCC-SS--
 251                    *->llrrQkAFGYTyEdvelvllPMAetGkEalGSMGdDtPLAVLSekpr
 252                       l+++Q+AFGYT+Edvelv+++MA+++kE++++MGdD+PL +LSek++
 253   gi|9081913   478    LMQLQTAFGYTNEDVELVIEHMASQAKEPTFCMGDDIPLSILSEKSH 524
 254
 255                 CS -GGGCEEE----SSS----TTTTGGG-B--EEES--S-TTS-SGGGC-CE
 256                    lLYdYFKQlFAQVTNPPIDPIREelVMSLetylGpegNlLeptpeqarrl
 257                    +LYdYFKQ+FAQVTNP+IDP+RE+lVMSL+ ++G+++NlL+  p+ a+++
 258   gi|9081913   525 ILYDYFKQRFAQVTNPAIDPLRESLVMSLAIQIGHKSNLLDDQPTLAKHI 574
 259
 260                 CS EESSSB--HHHHHH.HHHH....CCCCEEEEESEEESTTSTTCHHHHHHH
 261                    kLesPILsnselekmlknidairegfkaatIditFdveeGvdgLeaaLdr
 262                    kLesP+++++el++ + +     +++++  I+++F  e+G++ ++  + +
 263   gi|9081913   575 KLESPVINEGELNA-IFE-----SKLSCIRINTLFQLEDGPKNFKQQIQQ 618
 264
 265                 CS HHHHHHHHHHCT-SEEEEESTCG--CTTEEE--HHHHHHHHHHHHHCTT-
 266                    lceeAeeAirsGaniivLSDRndildeervaIPaLLAvGAVHhHLIrkgL
 267                    lce A++Ai +G ni+vLSD+n+ ld+e+v+IP+LLAvGAVHhHLI kgL
 268   gi|9081913   619 LCENASQAILDGNNILVLSDKNNSLDSEKVSIPPLLAVGAVHHHLINKGL 668
 269
 270                 CS CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHHHCCCCCCC
 271                    RtkvslvVETGEaREvHHFAvLiGYGAsAInPYLAyETirdWWlirrGll
 272                    R+ +s+ VET++++++HHFA+LiGYGAsAI+PYLA+ET r+WW + ++++
 273   gi|9081913   669 RQEASILVETAQCWSTHHFACLIGYGASAICPYLAFETARHWWSNPKTKM 718
 274
 275                 CS CHTTTS- T--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EEE
 276                    lmskGkl.elsleeavkNYrkAiekGlLKIMSKMGISTlqSYrGAQIFEA
 277                    lmskG+l++++++ea++NY+kA+e+GlLKI+SKMGIS+l+SY+GAQIFE+
 278   gi|9081913   719 LMSKGRLpACNIQEAQANYKKAVEAGLLKILSKMGISLLSSYHGAQIFEI 768
 279
 280                 CS SSB-H
 281                    vGLsk<-*
 282                    +GL++
 283   gi|9081913   769 LGLGS    773
 284
 285 Flavodoxin_NdrI: domain 1 of 1, from 488 to 497: score 2.1, E = 4.6
 286                 CS    -HHHHHHHHH
 287                    *->TneDVerVrk<-*
 288                       TneDVe V +
 289   gi|9081913   488    TNEDVELVIE    497
 290
 291 P22_AR_N: domain 1 of 1, from 524 to 541: score -0.2, E = 9.5
 292                    *->dVLydYWtrkGkAv..NPR<-*
 293                       ++LydY+  + +A  +NP+
 294   gi|9081913   524    HILYDYFK-QRFAQvtNPA    541
 295
 296 Cache_1: domain 1 of 1, from 537 to 557: score 7.0, E = 0.14
 297                    *->wTePYvdaalktgdlViTiaqPv<-*
 298                       +T+P++d +  +++lV ++a+++
 299   gi|9081913   537    VTNPAIDPL--RESLVMSLAIQI    557
 300
 301 Glu_synthase: domain 1 of 2, from 650 to 676: score 1.3, E = 3
 302                 CS    --HHHHHHHHHHHHHCTT-CCCSEEEE
 303                    *->lPwelgLaevhqtLvengLRdrVsLia<-*
 304                       +P  l++ +vh  L++ gLR + s+ +
 305   gi|9081913   650    IPPLLAVGAVHHHLINKGLRQEASILV    676
 306
 307 HdeA: domain 1 of 1, from 727 to 749: score 9.6, E = 0.015
 308                    *->ACk.QdkkAsFkdKvkaEldKvk<-*
 309                       AC  Q+ +A++k+ v+a l K+
 310   gi|9081913   727    ACNiQEAQANYKKAVEAGLLKIL    749
 311
 312 Sel1: domain 1 of 1, from 729 to 745: score 2.5, E = 7
 313                 CS    .HHH.HHHHHHHHHHTT-
 314                    *->DyekeAlkwyekAAeqGn<-*
 315                       ++++ A + y+kA e+G
 316   gi|9081913   729    NIQE-AQANYKKAVEAGL    745
 317
 318 DUF1981: domain 1 of 1, from 765 to 787: score 3.6, E = 3.3
 319                    *->iFgvltlaakeesesivklAfqiid.qi<-*
 320                       iF++l+l++       v+lAf+ +++qi
 321   gi|9081913   765    IFEILGLGSEV-----VNLAFKGTTsQI    787
 322
 323 tRNA_anti: domain 1 of 1, from 818 to 839: score 4.9, E = 2
 324                 CS    EEEEEEETTSSTSTCTCTT..EEEEEEEEEEE
 325                    *->tGkvkkrpggeqNnlkTGeKAlelvveeievl<-*
 326                       +G v+ rpgge          ++++ +e+
 327   gi|9081913   818    YGFVQYRPGGE----------YHINNPEMSKA    839
 328
 329 Cystatin: domain 1 of 1, from 826 to 859: score 2.4, E = 3.9
 330                 CS    ECEEEEET.STSHHHHHHHHHHHHHHHHHSSSSEEEEE
 331                    *->GglspvdpNendpevqealdfAlakyNeksndnylfel<-*
 332                       Gg   +++    pe  +al+ A+  yN +  +ny++ l
 333   gi|9081913   826    GGEYHINN----PEMSKALHQAVRGYNPEYYNNYQSLL    859
 334
 335 RNase_PH_C: domain 1 of 1, from 827 to 846: score 4.2, E = 2.3
 336                 CS    SSSS.B.HHHHHHHHHHHHHH
 337                    *->GkgnglteelleealelAkeg<-*
 338                       G +++++ +++ +al++A+ g
 339   gi|9081913   827    G-EYHINNPEMSKALHQAVRG    846
 340
 341 Glu_synthase: domain 2 of 2, from 830 to 1216: score 857.3, E = 9e-255
 342                 CS    -SS-HHHHHHHHHHHHC--T-HHHHHHHHHHHHTS.-S-SGGGGEEE
 343                    *->hrnepeviktlqkavqvpveskpsydkYreplnertpigalrdlLef
 344                       h n+pe++k l++av+    +   y +Y+ +l +r p++alrdlL++
 345   gi|9081913   830    HINNPEMSKALHQAVRG--YNPEYYNNYQSLLQNR-PPTALRDLLKL 873
 346
 347                 CS --SS--......--GGGS--HHHHHTTEEEEEB-CTTC-HHHHHHHHHHH
 348                    kyaeepldtdkiipieevepaleikkrfctgaMSyGALSeeAheALAiAm
 349                     ++++p      i+i+eve+++ i + fctg+MS+GALS+e+he+LAiAm
 350   gi|9081913   874 QSNRAP------ISIDEVESIEDILQKFCTGGMSLGALSRETHETLAIAM 917
 351
 352                 CS HHCT-EEEETTT---GGGCSB-TTS-T S BTTSTT--S--TT-B---SE
 353                    nriGtksNtGEGGedperlkpaadlds.G.SpTlpHLkGLqnednarSAI
 354                    nriG+ksN+GEGGedp r+k + d++s+G+Sp lpHLkGL+n+d+a+SAI
 355   gi|9081913   918 NRIGGKSNSGEGGEDPVRFKILNDVNSsGtSPLLPHLKGLKNGDTASSAI 967
 356
 357                 CS EEE-TT-TT--............HHHHCC-SEEEEE---TTSTTT--EE-
 358                    kQvASGRFGVtkRnGefWeefkRseYLvnAdalEIKiAQGAKPGeGGhLP
 359                    kQ+ASGRFGVt            +eYL+nA++lEIKiAQGAKPGeGG+LP
 360   gi|9081913   968 KQIASGRFGVT------------PEYLMNAKQLEIKIAQGAKPGEGGQLP 1005
 361
 362                 CS GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-.TTS
 363                    GeKVspeIAriRnstPGvgliSPpPHHDIysiEDLaqLIydLkeindpkA
 364                    G+K+sp+IA +R ++PGv liSPpPHHDIysiEDL+qLI+dL++in pkA
 365   gi|9081913  1006 GKKISPYIATLRKCKPGVPLISPPPHHDIYSIEDLSQLIFDLHQIN-PKA 1054
 366
 367                 CS EEEEEEE-STTHHHHHHH...HHHTT-SEEEEE-TT---SSEECCHHHHC
 368                    pisVKLVsehgvgtiaaGhmqvakAnADiIlIdGhdGGTGASpktsikha
 369                    +isVKLVse g+gtiaaG   vak+nADiI+I+GhdGGTGASp++sikha
 370   gi|9081913  1055 KISVKLVSEIGIGTIAAG---VAKGNADIIQISGHDGGTGASPLSSIKHA 1101
 371
 372                 CS ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE
 373                    GlPwelgLaevhqtLvengLRdrVsLiadGGLrTGaDVakAaaLGAdavg
 374                    G PwelgL+evhq+L en+LRdrV+L++dGGLrTG D+++Aa++GA+++g
 375   gi|9081913  1102 GSPWELGLSEVHQLLAENQLRDRVTLRVDGGLRTGSDIVLAAIMGAEEFG 1151
 376
 377                 CS -SHHHHHHCT--S---CCCT--TTSSS---CCHH..CT----HHHHHHHH
 378                    iGTaaLiAlGCimaRvCHtntCPvGvATQDPeLrKrlkfegaperVvNyf
 379                    +GT+a+iA+GCimaR+CHtn+CPvGvATQ++eLr   +f g+pe +vN+f
 380   gi|9081913  1152 FGTVAMIATGCIMARICHTNKCPVGVATQREELR--ARFSGVPEALVNFF 1199
 381
 382                 CS HHHHHHHHHHHHHHT-S
 383                    iflaeEvrellaqlGfr<-*
 384                    +f+  Evre+la+lG++
 385   gi|9081913  1200 LFIGNEVREILASLGYK    1216
 386
 387 DUF258: domain 1 of 1, from 839 to 860: score 0.3, E = 8.3
 388                 CS    HHHHHHHCTSS-HHHHHHHHHHHH
 389                    *->AVkaAveeGeIseeRYesYlklle<-*
 390                       A+ +Av    +++e Y++Y+ ll+
 391   gi|9081913   839    ALHQAVR--GYNPEYYNNYQSLLQ    860
 392
 393 Pencillinase_R: domain 1 of 1, from 856 to 894: score 3.9, E = 2.5
 394                 CS    XXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXX
 395                    *->drlfggsvgalvanfleee....klSeddieeLrelLde<-*
 396                       + l++++++ ++ ++l+ ++++ ++S d++e ++++L++
 397   gi|9081913   856    QSLLQNRPPTALRDLLKLQsnraPISIDEVESIEDILQK    894
 398
 399 SelT: domain 1 of 1, from 872 to 885: score 3.1, E = 2.2
 400                    *->KLqtGrvYAPPtpqEL<-*
 401                       KLq++r   P++++E+
 402   gi|9081913   872    KLQSNRA--PISIDEV    885
 403
 404 Nitro_FeMo-Co: domain 1 of 1, from 879 to 897: score 2.1, E = 5.3
 405                 CS    EEE-TTSSBHHHHHHHHHC
 406                    *->pikagegetieeaiealqe<-*
 407                       pi   e e+ie+ + ++ +
 408   gi|9081913   879    PISIDEVESIEDILQKFCT    897
 409
 410 DUF37: domain 1 of 1, from 927 to 934: score 3.0, E = 4.5
 411                    *->hpGGyDPV<-*
 412                       ++GG DPV
 413   gi|9081913   927    GEGGEDPV    934
 414
 415 Scm3: domain 1 of 1, from 953 to 963: score 2.2, E = 3.5
 416                    *->HLraLeteddi<-*
 417                       HL++L+++d++
 418   gi|9081913   953    HLKGLKNGDTA    963
 419
 420 cobW: domain 1 of 1, from 1038 to 1058: score 5.1, E = 0.45
 421                 CS    ...HHHHHHHHHH-SSS-EEE
 422                    *->adlekleadlrrlnpeapiip<-*
 423                       +dl++l+ dl+++np+a+i
 424   gi|9081913  1038    EDLSQLIFDLHQINPKAKISV    1058
 425
 426 Arch_flagellin: domain 1 of 1, from 1050 to 1072: score 4.1, E = 0.66
 427                    *->inpstkvrgeVvpenGapgtief<-*
 428                       inp  k+++++v+e+G+ ++
 429   gi|9081913  1050    INPKAKISVKLVSEIGIGTIAAG    1072
 430
 431 DUF1393: domain 1 of 1, from 1055 to 1068: score 3.1, E = 2
 432                    *->klSvKtVVAiGIGA<-*
 433                       k+SvK V  iGIG+
 434   gi|9081913  1055    KISVKLVSEIGIGT    1068
 435
 436 FtsK_SpoIIIE: domain 1 of 1, from 1107 to 1143: score 2.6, E = 3.1
 437                    *->lviDnydeLaeenlL.ervtsLknqGlsygvhvmata<-*
 438                       l++ + ++L +en+L++rvt+ + +Gl +g +++++a
 439   gi|9081913  1107    LGLSEVHQLLAENQLrDRVTLRVDGGLRTGSDIVLAA    1143
 440
 441 FMN_dh: domain 1 of 1, from 1109 to 1148: score 3.2, E = 0.89
 442                 CS    HHHHHHHHHCHHTTTSSEEEEESS-SSHHHHHHHHHHTSS
 443                    *->LpeVvPIlkeaAvkgdieVllDgGvRRGtDVlKALALGAr<-*
 444                       L eV  +l e  + +++   +DgG R+G+D++ A  +GA+
 445   gi|9081913  1109    LSEVHQLLAENQLRDRVTLRVDGGLRTGSDIVLAAIMGAE    1148
 446
 447 DSRB: domain 1 of 1, from 1120 to 1134: score 2.7, E = 2.7
 448                    *->mKvndrvtvKtDGgpR<-*
 449                        ++ drvt + DGg R
 450   gi|9081913  1120    -QLRDRVTLRVDGGLR    1134
 451
 452 Phage_Mu_P: domain 1 of 1, from 1122 to 1131: score -0.4, E = 10
 453                    *->sntVtLrvgG<-*
 454                        ++VtLrv+G
 455   gi|9081913  1122    RDRVTLRVDG    1131
 456
 457 Hormone_4: domain 1 of 1, from 1168 to 1176: score 4.4, E = 2.5
 458                 CS    X-TT--TT-
 459                    *->CyirnCPrG<-*
 460                       C  + CP+G
 461   gi|9081913  1168    CHTNKCPVG    1176
 462
 463 GDC-P: domain 1 of 1, from 1205 to 1225: score 7.1, E = 0.086
 464                    *->eqqeMLstiGlssLddLidat<-*
 465                       e++e+L+++G++sLdd ++++
 466   gi|9081913  1205    EVREILASLGYKSLDDITGQN    1225
 467
 468 PspB: domain 1 of 1, from 1268 to 1276: score 0.4, E = 8.4
 469                    *->MsaffLagP<-*
 470                       M+ ++La+P
 471   gi|9081913  1268    MDDDILAIP    1276
 472
 473 T5orf172: domain 1 of 1, from 1271 to 1293: score 2.0, E = 6.1
 474                    *->dvvalievedaraklEklLHkrFk<-*
 475                       d+ a+ ev++a  klE+++ k+Fk
 476   gi|9081913  1271    DILAIPEVSNAI-KLETEITKHFK    1293
 477
 478 CAP_C: domain 1 of 1, from 1283 to 1292: score 1.3, E = 7.4
 479                 CS    EEEEEE----
 480                    *->KLvTevveha<-*
 481                       KL+Te++ h
 482   gi|9081913  1283    KLETEITKHF    1292
 483
 484 GXGXG: domain 1 of 1, from 1290 to 1485: score 367.3, E = 2.7e-107
 485                 CS    EEEEE-TT--STTHHHHHHHHHHCTTTS.S-TTCEEEEEEEEE-TTT
 486                    *->keeaiiNtdrlvgtrlsgeiakkygeegalpkdtgkivfnGsAGqsf
 487                       k+++i Nt+r+vgtrlsg iak yg+ g + k+ +k++f+GsAGqsf
 488   gi|9081913  1290    KHFKIANTNRTVGTRLSGIIAKNYGNTG-F-KGLIKLNFYGSAGQSF 1334
 489
 490                 CS TTT-BTTEEEEEEEEE-S.TTTTT-ECCEEEEE--TT-.......SS-GG
 491                    GafmagGvtLeleGdAnddyvGkgmsGGeIvikgnagdpvGnnMdageyv
 492                    Gaf+a+G++L l+G+And yvGkgm+GG+Ivi+++ag         +e +
 493   gi|9081913  1335 GAFLASGINLKLMGEAND-YVGKGMNGGSIVIVPPAGT-------IYEDN 1376
 494
 495                 CS GSEEC-SSTTTT--CEEEEESSEE-TTTTTT-.....CCEEEEESEB.-S
 496                    gnviaGNtclyGatGGkifiaGdAGerfgvrnkayKdsgatiVveGvaGd
 497                    ++vi+GNtclyGatGG++f++G+AGerf+vrn     s a+ VveGv Gd
 498   gi|9081913  1377 NQVIIGNTCLYGATGGYLFAQGQAGERFAVRN-----SLAESVVEGV-GD 1420
 499
 500                 CS STTTT-EEEEEEESS-B-SSBTTT--CCEEEEE-TTS.......THHHHB
 501                    hggEYMtGGtivVlGdaGrnvGagMtGGiaYvlgeiedfsyMiatlpgkv
 502                    h++EYMtGG+ivVlG+aGrnvGagMtGG+aY+l+e+e        + ++v
 503   gi|9081913  1421 HACEYMTGGVIVVLGKAGRNVGAGMTGGLAYFLDEDE-------NFIDRV 1463
 504
 505                 CS -CCCEEEE...ES-S......CCHHHHHHHH
 506                    nleiVeledlkrievkrkklLpegekqlkel<-*
 507                    n+eiV+ +   r+ +      ++ge+qlk+l
 508   gi|9081913  1464 NSEIVKIQ---RVIT------KAGEEQLKNL    1485
 509
 510 DUF1514: domain 1 of 1, from 1453 to 1469: score 3.5, E = 5.7
 511                    *->LeeyrieveRikkevkk<-*
 512                       L e+++ ++R++ e+ k
 513   gi|9081913  1453    LDEDENFIDRVNSEIVK    1469
 514
 515 Colicin: domain 1 of 1, from 1456 to 1467: score 1.4, E = 7.5
 516                 CS    SHHHHHHHHHCH
 517                    *->DdkfveklNkli<-*
 518                       D++f++ +N +i
 519   gi|9081913  1456    DENFIDRVNSEI    1467
 520
 521 Ribosomal_S6: domain 1 of 1, from 1461 to 1481: score 3.3, E = 3.7
 522                 CS    CCHHHHHHHHHHHHHCTT-EE
 523                    *->EqvkqeiekYqkvLtnngAei<-*
 524                       ++v++ei k+q+v+t++g+e+
 525   gi|9081913  1461    DRVNSEIVKIQRVITKAGEEQ    1481
 526
 527 BicD: domain 1 of 1, from 1465 to 1481: score -1.6, E = 6.8
 528                    *->gqaysnqrkvAkdGeer<-*
 529                        + +++qr+ +k Gee+
 530   gi|9081913  1465    SEIVKIQRVITKAGEEQ    1481
 531
 532 PUF: domain 1 of 1, from 1470 to 1486: score 6.5, E = 0.47
 533                    *->lQkllevateeqkqlil<-*
 534                       +Q+++++a+eeq ++++
 535   gi|9081913  1470    IQRVITKAGEEQLKNLI    1486
 536
 537 DUF477: domain 1 of 1, from 1472 to 1495: score 3.8, E = 1.7
 538                    *->gtLspserarLeqalaalEqktga<-*
 539                       ++++++  ++L   ++  ++ktg+
 540   gi|9081913  1472    RVITKAGEEQLKNLIENHAAKTGS    1495
 541
 542 Phage_prot_Gp6: domain 1 of 1, from 1479 to 1492: score 1.0, E = 4
 543                    *->eEmikkFidkHklr<-*
 544                       eE +k++i+ H+++
 545   gi|9081913  1479    EEQLKNLIENHAAK    1492
 546
 547 IBN_N: domain 1 of 1, from 1498 to 1516: score 8.2, E = 0.17
 548                 CS    HHHHHHHHHCCTHHCHHHHH
 549                    *->AEkqLeqlekqklPgfllaL<-*
 550                       A++ Le+++++ lP+f++ +
 551   gi|9081913  1498    AHTILEKWNSY-LPQFWQVV    1516
 552
 553 GspM: domain 1 of 1, from 1506 to 1520: score 1.0, E = 8.6
 554                 CS    XXXXXXXXXXXXXXX
 555                    *->mneLqawWqgrspRE<-*
 556                       ++ L ++Wq ++p+E
 557   gi|9081913  1506    NSYLPQFWQVVPPSE    1520
 558
 559 //