t/data/hmmpfam_multiresult.out

   1 hmmpfam - search one or more sequences against HMM database
   2 HMMER 2.3.2 (Oct 2003)
   3 Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
   4 Freely distributed under the GNU General Public License (GPL)
   5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
   6 HMM file:                 testInput.hmm
   7 Sequence file:            testInput.fasta
   8 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
   9
  10 Query sequence: Test
  11 Accession:      [none]
  12 Description:    [none]
  13
  14 Scores for sequence family classification (score includes all domains):
  15 Model    Description                                    Score    E-value  N
  16 -------- -----------                                    -----    ------- ---
  17 TEST                                                    184.7    2.5e-56   1
  18
  19 Parsed for domains:
  20 Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
  21 -------- ------- ----- -----    ----- -----      -----  -------
  22 TEST       1/1       8    97 .]     1    95 []   184.7  2.5e-56
  23
  24 Alignments of top-scoring domains:
  25 TEST: domain 1 of 1, from 8 to 97: score 184.7, E = 2.5e-56
  26                    *->svfqqqqssksttgstvtAiAiAigYRYRYRAvtWnsGsLssGvnDn
  27                       sv+qqqq+  +    +vtAiAiAigYRYRYRAv Wn GsLs G nDn
  28         Test     8    SVYQQQQGGSA----MVTAIAIAIGYRYRYRAVVWNKGSLSTGTNDN 50
  29
  30                    DnDqqsdgLYtiYYsvtvpssslpsqtviHHHaHkasstkiiikiePr<-
  31                    DnDq +d LYtiYYsvtv +ss+p q+v+HHHaH+asstkiiiki P
  32         Test    51 DNDQAAD-LYTIYYSVTVSASSWPGQSVTHHHAHPASSTKIIIKIAPS   97
  33
  34                    *
  35
  36         Test     -   -
  37
  38 //
  39 Sequence 0
  40
  41 Query sequence: lcl|gi|340783625|Plus1
  42 Accession:      [none]
  43 Description:    megaplasmid, complete sequence [UNKNOWN]
  44
  45 Scores for sequence family classification (score includes all domains):
  46 Model                Description                        Score    E-value  N
  47 --------             -----------                        -----    ------- ---
  48 IS66_ORF3.uniq                                          -30.0    1.7e-15   1
  49
  50 Parsed for domains:
  51 Model                Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
  52 --------             ------- ----- -----    ----- -----      -----  -------
  53 IS66_ORF3.uniq         1/1   60792 61184 ..     1   558 []   -30.0  1.7e-15
  54
  55 Alignments of top-scoring domains:
  56 IS66_ORF3.uniq: domain 1 of 1, from 60792 to 61184: score -30.0, E = 1.7e-15
  57                    *->mSSPLDLSLFPNLmtevvkmnaalpddlslLkAalqkqQavvea..l
  58                           L  S FP + +      aa+p+ l +    l    + v  + +
  59   lcl|gi|340 60792    SCTGLWDSEFPPVFPVNGSQRAATPF-LPVGPDELSSPPSSVLXscY 60837
  60
  61                    dakianleelIEkLka.qldkLRRmkFGkrSEKkRhkLeldiaQiekale
  62                    d  +     l  +L ++q   LR    ++r
  63   lcl|gi|340 60838 DFPLCQSLSLCFRLGFpQALALRVRQRAPRGCH----------------- 60870
  64
  65                    dLEddLnetqaeiaeaekkieaPAssppkeaPiaskPesPRqerkRkPLP
  66                          +  +a+    +      A+ +p++            + +   LP
  67   lcl|gi|340 60871 ------AHRRARGLFFTDTPHPVAVPRPQR----------DLTGSLVTLP 60904
  68
  69                    eeLPReerRlePestvCPcggGqLkriGEDvsEqLDlvpaaFeVIqTvRp
  70                    + +P  e    P + + P             + + D vp+  +
  71   lcl|gi|340 60905 APMPCSET---PVESQHPGH-----------TGRSDAVPTPNTMKTS--- 60937
  72
  73                    KyACrqCdtiVQAPaPakpIErGiptaGLLArvlVSKyaEHlPLYRQsEI
  74
  75   lcl|gi|340     - -------------------------------------------------- -
  76
  77                    yaRqGVeiaRstLadWVgrtgarLaPLvdALaeyVLkeGklHADeTPVqV
  78                          +i  s L   V++ + r
  79   lcl|gi|340 60938 ------AIMISGLIHGVSARCLRF-------------------------- 60955
  80
  81                    LaPGnkKTKTGyLWAYvRDDRnagsSlppaVvfayspdRkGEHaqvhLae
  82                         k   TG      R D     Slp+ +    +  R G        e
  83   lcl|gi|340 60956 -----KRSVTG-----PRQD-----SLPADGL---RLCREG-------VE 60980
  84
  85                    ysGkLqaDAyaGYnalyesgRVGGDpikEAgCwAHaRRKifDlhvrnpSe
  86                     sG      +   +   +           ++ wAH RR ++D+    pS+
  87   lcl|gi|340 60981 PSGSQXKVSVTSILLSRTXP---------VASWAHVRRHFYDVNQGAPSP 61021
  88
  89                    lteEALerIaaLYeIEaeIRGspaEdRlavRqelSvPlvkslseWLtaqr
  90                     ++ AL rI +LYeIEaeI   p+E+    Rq+++ Pl+ s+  WL   r
  91   lcl|gi|340 61022 VAQTALLRIHELYEIEAEIKDDPPEQKMLARQQRAAPLLESFWTWLNDTR 61071
  92
  93                    KtlsrgseLAKALaYlLnrWdALtryldDGqVpIDNNivENAiRrvAlGR
  94                      +  +s+ AKA  Y+L+rW ALt+yl+ G+  IDNN vE A+R vA+GR
  95   lcl|gi|340 61072 AQVAPKSAIAKAIGYALKRWKALTLYLQEGHLGIDNNPVERALRGVAIGR 61121
  96
  97                    kNyLFaGSDrGGeraAliySLIgTCKmNgVePyaYLrdVltrLadwplnk
  98                    kN+LFaG D GGeraA++y LI TCK+NgVeP aYL+dVl++L++wp  +
  99   lcl|gi|340 61122 KNFLFAGNDAGGERAAAFYTLIETCKLNGVEPFAYLCDVLEKLPTWPNKR 61171
 100
 101                    DideLLPWayasai<-*
 102                      +eLLPW++
 103   lcl|gi|340 61172 -LHELLPWNWKNLT    61184
 104
 105 //
 106 Sequence 1