t/data/test.interpro-go.xml

   1 <?xml version="1.0" encoding="ISO-8859-1"?>
   2 <EBIInterProScanResults xmlns="http://www.ebi.ac.uk/schema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://www.ebi.ac.uk/schema/InterProScanResult.xsd">
   3         <Header>
   4                 <program name="InterProScan" version="4.0" citation="PMID:11590104" />
   5                 <parameters>
   6                         <sequences total="1" />
   7                         <databases total="6">
   8                                 <database number="1" name="PFAM" type="model" />
   9                                 <database number="2" name="SUPERFAMILY" type="model" />
  10                                 <database number="3" name="SEG" type="NA" />
  11                                 <database number="4" name="PROFILE" type="strings" />
  12                                 <database number="5" name="PRINTS" type="matrix" />
  13                                 <database number="6" name="COIL" type="matrix" />
  14                         </databases>
  15                 </parameters>
  16         </Header>
  17 <interpro_matches>
  18
  19    <protein id="AAI51838.1" length="3314" crc64="96578FBE618A893C" >
  20         <interpro id="IPR000910" name="High mobility group box, HMG1/HMG2" type="Domain" parent_id="IPR009071">
  21           <child_list>
  22             <rel_ref ipr_ref="IPR000135"/>
  23           </child_list>
  24           <classification id="GO:0003677" class_type="GO">
  25             <category>Molecular Function</category>
  26             <description>DNA binding</description>
  27           </classification>
  28           <match id="PF00505" name="HMG_box" dbname="PFAM">
  29             <location start="1100" end="1153" score="2.3e-05" status="T" evidence="HMMPfam" />
  30           </match>
  31         </interpro>
  32         <interpro id="IPR001965" name="Zinc finger, PHD-type" type="Domain" parent_id="IPR011011">
  33           <found_in>
  34             <rel_ref ipr_ref="IPR008087"/>
  35          </found_in>
  36           <classification id="GO:0005515" class_type="GO">
  37             <category>Molecular Function</category>
  38             <description>protein binding</description>
  39           </classification>
  40           <classification id="GO:0008270" class_type="GO">
  41             <category>Molecular Function</category>
  42             <description>zinc ion binding</description>
  43           </classification>
  44           <match id="PF00628" name="PHD" dbname="PFAM">
  45             <location start="404" end="455" score="9.4e-14" status="T" evidence="HMMPfam" />
  46             <location start="456" end="502" score="2.6e-08" status="T" evidence="HMMPfam" />
  47             <location start="531" end="584" score="6.2e-07" status="T" evidence="HMMPfam" />
  48           </match>
  49           <match id="PS50016" name="ZF_PHD_2" dbname="PROFILE">
  50             <location start="402" end="455" score="9.374" status="T" evidence="ProfileScan" />
  51             <location start="452" end="502" score="9.855" status="T" evidence="ProfileScan" />
  52             <location start="529" end="584" score="9.143" status="T" evidence="ProfileScan" />
  53           </match>
  54         </interpro>
  55         <interpro id="IPR009071" name="High mobility group box, HMG" type="Domain">
  56           <child_list>
  57             <rel_ref ipr_ref="IPR000910"/>
  58           </child_list>
  59           <found_in>
  60             <rel_ref ipr_ref="IPR006780"/>
  61             <rel_ref ipr_ref="IPR010477"/>
  62             <rel_ref ipr_ref="IPR015101"/>
  63          </found_in>
  64           <match id="SSF47095" name="HMG-box" dbname="SUPERFAMILY">
  65             <location start="1099" end="1148" score="4.9e-05" status="T" evidence="superfamily" />
  66           </match>
  67         </interpro>
  68         <interpro id="IPR011011" name="Zinc finger, FYVE/PHD-type" type="Domain" parent_id="IPR013083">
  69           <child_list>
  70             <rel_ref ipr_ref="IPR000306"/>
  71             <rel_ref ipr_ref="IPR001965"/>
  72             <rel_ref ipr_ref="IPR010911"/>
  73           </child_list>
  74           <found_in>
  75             <rel_ref ipr_ref="IPR006788"/>
  76          </found_in>
  77           <contains>
  78             <rel_ref ipr_ref="IPR008899"/>
  79           </contains>
  80           <classification id="GO:0008270" class_type="GO">
  81             <category>Molecular Function</category>
  82             <description>zinc ion binding</description>
  83           </classification>
  84           <match id="SSF57903" name="FYVE/PHD zinc finger" dbname="SUPERFAMILY">
  85             <location start="453" end="503" score="1.3e-12" status="T" evidence="superfamily" />
  86             <location start="396" end="453" score="2.5e-09" status="T" evidence="superfamily" />
  87             <location start="524" end="589" score="3.4e-08" status="T" evidence="superfamily" />
  88           </match>
  89         </interpro>
  90         <interpro id="noIPR" name="unintegrated" type="unintegrated">
  91           <match id="coil" name="coiled-coil" dbname="COIL">
  92             <location start="783" end="804" score="NA" status="?" evidence="Coil" />
  93             <location start="1139" end="1160" score="NA" status="?" evidence="Coil" />
  94             <location start="1204" end="1232" score="NA" status="?" evidence="Coil" />
  95             <location start="2500" end="2524" score="NA" status="?" evidence="Coil" />
  96             <location start="2679" end="2717" score="NA" status="?" evidence="Coil" />
  97             <location start="2843" end="2871" score="NA" status="?" evidence="Coil" />
  98           </match>
  99           <match id="seg" name="seg" dbname="SEG">
 100             <location start="108" end="117" score="NA" status="?" evidence="Seg" />
 101             <location start="204" end="240" score="NA" status="?" evidence="Seg" />
 102             <location start="339" end="362" score="NA" status="?" evidence="Seg" />
 103             <location start="640" end="652" score="NA" status="?" evidence="Seg" />
 104             <location start="788" end="799" score="NA" status="?" evidence="Seg" />
 105             <location start="849" end="861" score="NA" status="?" evidence="Seg" />
 106             <location start="886" end="897" score="NA" status="?" evidence="Seg" />
 107             <location start="978" end="994" score="NA" status="?" evidence="Seg" />
 108             <location start="1012" end="1026" score="NA" status="?" evidence="Seg" />
 109             <location start="1225" end="1232" score="NA" status="?" evidence="Seg" />
 110             <location start="1279" end="1288" score="NA" status="?" evidence="Seg" />
 111             <location start="1295" end="1310" score="NA" status="?" evidence="Seg" />
 112             <location start="1312" end="1325" score="NA" status="?" evidence="Seg" />
 113             <location start="1328" end="1339" score="NA" status="?" evidence="Seg" />
 114             <location start="1618" end="1632" score="NA" status="?" evidence="Seg" />
 115             <location start="1826" end="1845" score="NA" status="?" evidence="Seg" />
 116             <location start="1918" end="1935" score="NA" status="?" evidence="Seg" />
 117             <location start="2148" end="2172" score="NA" status="?" evidence="Seg" />
 118             <location start="2379" end="2393" score="NA" status="?" evidence="Seg" />
 119             <location start="2456" end="2475" score="NA" status="?" evidence="Seg" />
 120             <location start="2484" end="2516" score="NA" status="?" evidence="Seg" />
 121             <location start="2607" end="2616" score="NA" status="?" evidence="Seg" />
 122             <location start="2624" end="2646" score="NA" status="?" evidence="Seg" />
 123             <location start="2841" end="2863" score="NA" status="?" evidence="Seg" />
 124             <location start="2908" end="2935" score="NA" status="?" evidence="Seg" />
 125             <location start="3046" end="3060" score="NA" status="?" evidence="Seg" />
 126             <location start="3219" end="3238" score="NA" status="?" evidence="Seg" />
 127           </match>
 128         </interpro>
 129    </protein>
 130
 131 </interpro_matches>
 132 </EBIInterProScanResults>