Bio::DB::TFBS namespace has been moved to its own distribution named after itself
[bioperl-live.git] / t / data / AY763288.gb
blob893c717fe6358c46aaef01380b36e4faa0e36b1f
2 LOCUS       AY763288                 723 bp    DNA     linear   INV 18-JAN-2006
3 DEFINITION  Leishmania guyanensis putative elongation factor 1 beta gene,
4             complete cds.
5 ACCESSION   AY763288
6 VERSION     AY763288.1  GI:54300415
7 KEYWORDS    .
8 SOURCE      Leishmania guyanensis
9   ORGANISM  Leishmania guyanensis
10             Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
11             Leishmania; Leishmania guyanensis species complex.
12 REFERENCE   1  (bases 1 to 723)
13   AUTHORS   Walker,J., Acestor,N., Gongora,R., Quadroni,M., Segura,I., Fasel,N.
14             and Saravia,N.G.
15   TITLE     Comparative protein profiling identifies elongation factor-1beta
16             and tryparedoxin peroxidase as factors associated with metastasis
17             in Leishmania guyanensis
18   JOURNAL   Mol. Biochem. Parasitol. 145 (2), 254-264 (2006)
19    PUBMED   16325936
20 REFERENCE   2  (bases 1 to 723)
21   AUTHORS   Vergel,C., Gongora,R.E., Saravia,N. and Walker,J.
22   TITLE     Direct Submission
23   JOURNAL   Submitted (24-SEP-2004) Biochemistry and Molecular Biology, Centro
24             Internacional de Entrenamiento e Investigaciones Medicas, Av 1a
25             Norte No. 3-03, Cali, Valle, Colombia
26 FEATURES             Location/Qualifiers
27      source          1..723
28                      /organism="Leishmania guyanensis"
29                      /mol_type="genomic DNA"
30                      /db_xref="taxon:5670"
31                      /clone="WHI/BT/78/M5313"
32                      /dev_stage="promastigote"
33                      /note="subgenus Viannia"
34      mRNA            <1..>723
35                      /product="putative elongation factor 1 beta"
36      CDS             1..723
37                      /note="similar to elongation factor 1 beta of Leishmania
38                      major (Friedlin)"
39                      /codon_start=1
40                      /product="putative elongation factor 1 beta"
41                      /protein_id="AAV32818.1"
42                      /db_xref="GI:54300416"
43                      /translation="MSVKDVSKKAAELEARLGGKLFLGGAKPTAEDVRMLNDLLGANH
44                      ASLYRWVKNMATYTEGERKAWGAPVRTAAPELRMPAPAAAAPAAAKKPVPAAAAPAAA
45                      KKPAPAPKAVAPAEDDDIGLFGETTEEEQAALEAKRAKDAEKKKAKKDVIAKSPILFD
46                      IKAWDDTVDLEALAQKLHAIQRDGLVWGDHKLAPVAFGVKKLQQLVVIEDDKVSGDDL
47                      EEMIMGFEDEVQSIDIVAWNKI"
48      misc_feature    379..381
49                      /note="putative; phosphorylation site"
50 ORIGIN      
51         1 atgtctgtga aggacgtgag caagaaggcc gccgagctgg aggcgaggct gggcggcaag
52        61 ctgttcctgg gcggcgcgaa gccgacggcg gaggacgtga ggatgctcaa cgacctgctc
53       121 ggcgcgaacc acgcgagcct gtaccggtgg gtgaagaaca tggcgaccta cacggagggc
54       181 gagcgcaagg cgtggggcgc accggtgcgc actgctgcgc cggagctgcg catgcccgcg
55       241 cctgccgcgg cggcgcctgc tgccgctaag aagcccgtgc ctgccgcggc ggcgcctgct
56       301 gccgctaaga agcccgcgcc tgcgccgaag gctgttgccc ctgcagagga cgacgacatc
57       361 ggcctgttcg gcgagacgac ggaggaggag caggcggcgc tggaggcgaa gagggcaaag
58       421 gacgcggaga agaagaaggc gaagaaggac gtgattgcga agtcgcccat cctgttcgac
59       481 atcaaggcgt gggacgacac ggtggacctg gaggcgctcg cgcagaagct gcacgcgatt
60       541 cagcgcgacg gcctggtgtg gggtgaccac aagctggcgc ccgttgcgtt cggcgtgaag
61       601 aagctgcagc agctggtcgt gatcgaggat gacaaagtgt ctggcgacga cctggaggag
62       661 atgatcatgg gcttcgagga tgaggtgcag tcgattgata tcgtcgcctg gaacaagatc
63       721 tga