| blob | b98113d7c65c74ed902b3e5dd167c1a9650d1bcc |
1 GC Proportion = 33.3%
2 Minimum gene length = 90
3 Minimum overlap length = 30
4 Minimum overlap percent = 10.0%
5 Threshold score = 90
6 Use independent scores = True
7 Ignore independent score on orfs longer than 481
8 Use strict independent model = True
9 Use first start codon = True
11 Orf Gene Lengths Gene -- Frame Scores - Indep
12 ID# Fr Start Start End Orf Gene Score F1 F2 F3 R1 R2 R3 Score
13 F3 654 681 779 126 99 0 99 _ 0 _ _ _ 0 0 -1.452
14 R1 984 957 772 213 186 0 99 _ _ 0 _ _ 0 0 -1.383
15 F2 917 917 1009 93 93 0 99 0 _ _ _ _ 0 0 -1.335
16 1 F1 292 292 1620 1329 1329 99 99 _ _ _ _ _ 0 396 -1.219
17 R2 1631 1607 1515 117 93 0 99 _ _ _ 0 _ 0 0 -1.331
18 F2 1592 1706 1837 246 132 0 _ 0 _ _ _ _ 99 0 -1.346
19 R2 1844 1829 1737 108 93 0 _ 0 _ _ 0 _ 99 0 -1.351
20 F3 1860 1881 2000 141 120 2 _ 7 2 _ _ 21 68 2 -1.372
21 F2 1841 1856 2095 255 240 0 _ 0 _ _ _ _ 99 7 -1.373
22 R3 2152 2017 1865 288 153 0 _ 8 _ _ _ 0 90 21 -1.397
23 F3 2004 2028 2174 171 147 0 _ _ 0 _ _ _ 99 0 -1.385
24 2 R1 2385 2349 2233 153 117 99 _ _ _ 99 _ _ 0 99 -1.208
25 R1 3039 3033 2944 96 90 14 _ _ _ 14 _ _ 85 14 -1.262
26 R3 3253 3235 3098 156 138 0 _ _ 0 _ _ 0 99 0 -1.356
27 F3 3087 3105 3254 168 150 0 _ _ 0 _ _ 0 99 0 -1.336
28 R3 3463 3439 3323 141 117 1 _ _ 98 _ _ 1 0 1 -1.235
29 F1 3550 3589 3699 150 111 0 0 _ 99 _ _ _ 0 0 -1.281
30 R3 3727 3712 3611 117 102 0 _ _ 99 _ _ 0 0 0 -1.247
31 R1 4038 4026 3916 123 111 0 _ _ 99 0 _ _ 0 0 -1.376
32 R2 4097 4091 3999 99 93 0 _ _ 99 _ 0 _ 0 0 -1.296
33 F1 4009 4009 4110 102 102 0 0 _ 99 _ _ _ 0 0 -1.341
34 F1 4171 4189 4311 141 123 0 0 _ 99 _ 0 0 0 0 -1.416
35 3 F3 3258 3279 4397 1140 1119 99 _ _ 99 _ _ _ 0 791 -1.201
36 R3 4405 4300 4184 222 117 0 0 _ 99 _ 0 0 0 0 -1.360
37 R2 4481 4436 4323 159 114 0 _ _ _ _ 0 _ 99 0 -1.359
38 F2 4454 4460 4549 96 90 0 _ 0 _ _ _ _ 99 0 -1.348
39 R1 5025 4962 4801 225 162 0 _ 0 _ 0 _ _ 99 0 -1.394
40 F2 4790 4811 5026 237 216 0 _ 0 _ 0 _ _ 99 0 -1.350
41 4 F1 5038 5062 6156 1119 1095 99 99 _ _ _ _ _ 0 99 -1.184
42 R2 6386 6383 6216 171 168 0 0 _ 99 _ 0 _ 0 0 -1.345
43 F1 6217 6292 6432 216 141 0 0 _ 99 _ _ _ 0 0 -1.391
44 R3 6487 6469 6338 150 132 1 _ _ 98 _ _ 1 0 1 -1.268
45 5 F3 6105 6156 6617 513 462 99 _ _ 99 _ _ _ 0 395 -1.205
46 R2 6722 6704 6600 123 105 0 0 _ _ _ 0 _ 99 0 -1.380
47 F1 6601 6628 6723 123 96 0 0 _ _ _ 0 0 99 0 -1.504
48 R3 6880 6856 6743 138 114 0 _ 99 0 _ _ 0 0 0 -1.541
49 R3 7033 6988 6884 150 105 0 _ 99 _ _ _ 0 0 0 -1.423
50 F3 7062 7062 7187 126 126 0 _ 99 0 _ 0 0 0 0 -1.379
51 R2 7196 7067 6975 222 93 0 _ 99 _ _ 0 _ 0 0 -1.504
52 R3 7267 7237 7037 231 201 0 _ 99 _ _ _ 0 0 0 -1.426
53 F3 7299 7299 7415 117 117 0 _ 99 0 _ _ _ 0 0 -1.388
54 R2 7502 7481 7389 114 93 0 _ 99 _ _ 0 0 0 0 -1.329
55 F3 7419 7425 7514 96 90 0 _ 98 0 1 _ 0 0 0 -1.341
56 R3 7525 7468 7337 189 132 0 _ 99 _ _ _ 0 0 0 -1.333
57 R1 7683 7524 7423 261 102 0 _ 96 _ 0 _ 0 2 1 -1.288
58 F3 7896 7899 8036 141 138 0 _ 99 0 _ 0 0 0 0 -1.479
59 R3 8050 8002 7895 156 108 0 _ 99 0 _ 0 0 0 0 -1.540
60 R2 8147 8069 7875 273 195 0 _ 99 _ _ 0 _ 0 0 -1.384
61 R3 8305 8293 8123 183 171 0 _ 99 _ _ _ 0 0 0 -1.399
62 6 F2 6674 6686 8602 1929 1917 99 _ 99 _ _ _ _ 0 1481 -1.218
63 R3 8986 8935 8819 168 117 0 _ 99 _ _ _ 0 0 0 -1.463
64 F3 9003 9003 9197 195 195 0 _ 99 0 _ _ _ 0 0 -1.421
65 R1 9246 9240 9142 105 99 0 _ 99 _ 0 _ _ 0 0 -1.309
66 R3 10417 10360 10199 219 162 0 _ 99 _ _ _ 0 0 0 -1.428
67 R3 10576 10576 10421 156 156 0 _ 99 _ _ _ 0 0 0 -1.380
68 R1 10851 10809 10576 276 234 0 _ 99 _ 0 _ _ 0 0 -1.340
69 R1 11097 11088 10999 99 90 0 _ 99 _ 0 _ _ 0 0 -1.362
70 7 F2 8606 8624 11125 2520 2502 99 _ 99 _ _ _ _ 0 792 -1.206
71 R2 11399 11345 11205 195 141 0 _ _ 99 _ 0 _ 0 0 -1.459
72 R3 11584 11536 11396 189 141 0 _ _ 99 _ _ 0 0 0 -1.375
73 R1 11742 11724 11635 108 90 0 _ 0 99 0 0 _ 0 0 -1.396
74 8 F3 11118 11133 12119 1002 987 99 _ _ 99 _ _ _ 0 396 -1.229
75 F1 11974 11974 12129 156 156 0 0 _ _ _ _ 81 18 0 -1.379
76 9 R3 12142 12130 11921 222 210 94 _ _ _ _ _ 94 5 175 -1.287
77 R2 12149 12146 12012 138 135 0 _ _ _ _ 0 _ 99 0 -1.381
78 R3 12469 12355 12167 303 189 0 _ _ 0 _ _ 0 99 0 -1.466
79 F3 12123 12129 12470 348 342 6 _ _ 6 _ _ _ 93 6 -1.391
80 R2 12494 12494 12309 186 186 0 _ _ _ _ 0 _ 99 0 -1.454
81 F2 12422 12473 12565 144 93 6 _ 6 _ _ _ _ 93 6 -1.318
82 R1 12651 12636 12541 111 96 0 _ _ 1 0 _ _ 98 0 -1.441
83 F3 12477 12489 12662 186 174 0 _ _ 0 _ _ _ 99 1 -1.389
84 R3 13084 13069 12977 108 93 0 99 _ _ _ 0 0 0 0 -1.347
85 R2 13169 13166 12972 198 195 0 99 _ _ _ 0 _ 0 0 -1.282
86 F3 13176 13218 13313 138 96 0 99 _ 0 _ _ _ 0 0 -1.296
87 10 F1 12670 12715 13449 780 735 99 99 _ _ _ _ _ 0 396 -1.211
88 R1 13470 13449 13294 177 156 0 99 _ _ 0 _ _ 0 0 -1.444
89 R3 13627 13624 13535 93 90 0 _ _ _ _ _ 0 99 0 -1.409
90 R2 13691 13688 13593 99 96 0 _ _ _ _ 0 _ 99 0 -1.364
91 11 F3 13656 13671 13838 183 168 99 _ _ 99 _ _ _ 0 99 -1.293
92 R2 13889 13871 13740 150 132 4 _ _ _ _ 4 _ 95 4 -1.327
93 F1 13762 13774 13917 156 144 0 0 _ _ _ _ _ 99 0 -1.376
94 F2 13928 13949 14074 147 126 1 0 1 _ 98 _ _ 0 1 -1.301
95 F1 13921 13963 14088 168 126 0 0 _ _ 99 _ _ 0 0 -1.425
96 R2 14222 14192 14091 132 102 0 _ _ _ 84 0 _ 15 0 -1.473
97 F1 14128 14128 14223 96 96 0 0 _ 0 98 0 _ 1 0 -1.481
98 F3 14103 14133 14330 228 198 0 _ _ 0 99 _ _ 0 0 -1.405
99 F2 14216 14270 14362 147 93 38 0 38 _ 50 _ _ 11 38 -1.336
100 F1 14248 14296 14397 150 102 0 0 _ _ 96 _ _ 3 0 -1.454
101 R2 14603 14594 14439 165 156 0 _ _ _ 99 0 _ 0 0 -1.305
102 12 R1 14847 14805 13807 1041 999 99 _ _ _ 99 _ _ 0 822 -1.279
103 F2 15419 15440 15544 126 105 0 _ 0 0 _ 94 _ 5 0 -1.496
104 R3 15682 15682 15530 153 153 0 _ _ 0 _ 99 0 0 0 -1.381
105 F2 15584 15599 15688 105 90 0 0 0 0 _ 99 _ 0 0 -1.518
106 F3 15210 15219 15746 537 528 0 _ _ 0 _ 99 _ 0 0 -1.512
107 13 R2 15791 15776 15219 573 558 99 _ _ _ _ 99 _ 0 490 -1.295
108 F1 16213 16219 16326 114 108 0 0 _ 99 _ _ _ 0 0 -1.297
109 F2 16253 16268 16369 117 102 0 _ 0 99 _ _ _ 0 0 -1.351
110 R3 17203 17101 17006 198 96 0 _ _ 98 _ _ 0 0 0 -1.297
111 F2 17198 17207 17335 138 129 0 _ 0 99 0 _ _ 0 0 -1.393
112 R1 17370 17349 17158 213 192 0 _ _ 99 0 _ _ 0 0 -1.339
113 14 F3 15849 15855 17459 1611 1605 99 _ _ 99 _ _ _ 0 593 -1.232
114 R3 17677 17623 17483 195 141 0 _ _ 99 _ _ 0 0 0 -1.339
115 R2 18242 18137 18045 198 93 0 _ _ 99 _ 0 _ 0 0 -1.320
116 15 F3 17463 17484 18374 912 891 99 _ _ 99 _ _ _ 0 297 -1.206
117 R2 18620 18554 18438 183 117 0 0 _ _ 99 0 _ 0 0 -1.344
118 F1 18439 18535 18633 195 99 0 0 _ _ 99 _ _ 0 0 -1.318
119 F2 18677 18719 18811 135 93 4 _ 4 _ 95 _ 0 0 4 -1.188
120 F1 18808 18835 18927 120 93 0 0 _ _ 99 _ _ 0 0 -1.497
121 R2 19040 18995 18885 156 111 0 _ _ _ 99 0 _ 0 0 -1.367
122 F3 18978 18981 19124 147 144 0 _ _ 0 99 _ _ 0 0 -1.309
123 R2 19235 19232 19044 192 189 0 _ _ _ 99 0 _ 0 0 -1.301
124 R3 19357 19357 19211 147 147 0 _ _ 0 99 _ 0 0 0 -1.360
125 F3 19188 19269 19391 204 123 0 _ _ 0 99 _ _ 0 0 -1.269
126 16 R1 19449 19407 18322 1128 1086 99 _ _ _ 99 _ _ 0 986 -1.187
127 F3 19443 19473 19571 129 99 0 _ _ 0 _ _ _ 99 0 -1.312
128 R2 19631 19628 19527 105 102 23 _ _ _ _ 23 _ 76 23 -1.268
129 F2 19610 19616 19720 111 105 42 _ 42 _ _ _ _ 57 42 -1.247
130 R3 19873 19843 19718 156 126 0 _ _ 0 _ _ 0 99 0 -1.478
131 F3 19719 19740 19895 177 156 0 _ _ 0 _ _ _ 99 0 -1.482
132 F1 20041 20068 20175 135 108 0 0 _ 70 _ _ 28 1 0 -1.444
133 R3 20185 20110 19976 210 135 0 _ _ 99 _ _ 0 0 28 -1.372
134 17 F3 19977 19980 20192 216 213 99 _ _ 99 _ _ _ 0 268 -1.320
135 F1 20179 20266 20364 186 99 0 0 0 _ _ _ 99 0 0 -1.365
136 R1 20445 20418 20305 141 114 0 _ 0 _ 0 _ 99 0 0 -1.318
137 F2 20261 20288 20446 186 159 0 _ 0 _ _ _ 99 0 0 -1.376
138 F1 20404 20413 20601 198 189 0 0 _ _ _ _ 99 0 0 -1.361
139 F3 20469 20583 20756 288 174 0 _ _ 0 _ _ 99 0 0 -1.274
140 18 R3 20824 20749 20189 636 561 99 _ _ _ _ _ 99 0 594 -1.215
141 F1 20752 20773 20910 159 138 4 4 2 _ _ _ _ 92 4 -1.340
142 R1 21078 21039 20842 237 198 0 _ 99 _ 0 _ _ 0 0 -1.243
143 F3 21063 21069 21212 150 144 0 _ 99 0 _ _ _ 0 0 -1.350
144 R1 21597 21585 21496 102 90 0 _ 99 _ 0 0 _ 0 0 -1.313
145 F1 21508 21520 21624 117 105 0 0 99 _ _ 0 _ 0 0 -1.361
146 19 F2 20765 20801 21703 939 903 99 _ 99 _ _ _ _ 0 497 -1.192
147 R3 22108 22078 21914 195 165 0 _ 99 _ _ _ 0 0 0 -1.325
148 F3 21918 21945 22109 192 165 0 _ 99 0 _ _ 0 0 0 -1.374
149 F3 22113 22116 22238 126 123 0 _ 99 0 0 0 _ 0 0 -1.273
150 R2 22277 22232 22020 258 213 0 _ 99 _ _ 0 _ 0 0 -1.294
151 R1 22320 22194 22081 240 114 0 _ 99 _ 0 0 _ 0 0 -1.237
152 20 F2 21845 21851 22351 507 501 99 _ 99 _ _ _ _ 0 594 -1.193
153 R3 22465 22462 22241 225 222 0 _ _ _ _ _ 0 99 0 -1.358
154 R2 22490 22487 22398 93 90 0 _ _ 99 _ 0 _ 0 0 -1.415
155 F1 22402 22420 22554 153 135 0 0 _ 99 _ _ _ 0 0 -1.354
156 R2 22598 22592 22494 105 99 0 _ _ 99 _ 0 _ 0 0 -1.425
157 R3 22720 22681 22547 174 135 0 _ _ 99 _ _ 0 0 0 -1.269
158 F1 22657 22663 22776 120 114 0 0 _ 99 _ 0 _ 0 0 -1.353
159 21 F3 22332 22359 23099 768 741 99 _ _ 99 _ _ _ 0 594 -1.221
160 R2 23501 23471 23271 231 201 0 _ _ 99 _ 0 _ 0 0 -1.351
161 22 F3 23112 23118 23723 612 606 99 _ _ 99 _ _ _ 0 198 -1.186
162 R2 24008 24008 23910 99 99 0 _ _ _ _ 0 _ 99 0 -1.382
163 F1 23920 23920 24033 114 114 0 0 _ _ _ _ _ 99 0 -1.364
164 F1 24220 24241 24330 111 90 0 0 _ 16 _ _ _ 83 0 -1.424
165 F2 24320 24365 24454 135 90 0 _ 0 19 _ _ _ 79 0 -1.403
166 R1 24507 24507 24412 96 96 0 _ _ 99 0 _ _ 0 0 -1.387
167 F2 24467 24536 24637 171 102 0 0 0 99 _ _ _ 0 0 -1.483
168 R3 24673 24670 24548 126 123 5 0 _ 94 _ _ 5 0 5 -1.270
169 F1 24496 24562 24723 228 162 0 0 _ 99 _ _ _ 0 0 -1.385
170 R1 25095 25089 24967 129 123 0 _ _ 99 0 _ _ 0 0 -1.450
171 R2 25343 25304 25185 159 120 0 _ _ 99 _ 0 _ 0 0 -1.591
172 F1 25225 25267 25362 138 96 0 0 0 99 _ _ _ 0 0 -1.484
173 F2 25208 25331 25444 237 114 0 _ 0 99 _ _ _ 0 0 -1.501
174 F1 25774 25774 25863 90 90 0 0 0 99 0 _ _ 0 0 -1.385
175 23 F3 24150 24216 25895 1746 1680 99 _ _ 99 _ _ _ 0 1020 -1.261
176 R3 26158 26125 25970 189 156 0 _ _ _ _ _ 0 99 0 -1.368
177 F3 26055 26064 26216 162 153 83 _ _ 83 _ _ _ 16 83 -1.262
178 R2 26309 26285 26133 177 153 1 _ _ _ _ 1 _ 98 1 -1.294
179 R1 26370 26328 26212 159 117 0 _ _ _ 0 _ _ 99 0 -1.327
180 F3 26463 26592 26684 222 93 19 _ _ 19 14 _ 7 59 19 -1.301
181 R3 26698 26647 26477 222 171 84 _ _ 0 _ _ 84 14 91 -1.290
182 R1 26703 26697 26557 147 141 0 _ _ _ 0 _ 92 7 14 -1.342
183 F2 26672 26684 26890 219 207 0 _ 0 _ _ _ _ 99 0 -1.325
184 F2 26945 26954 27067 123 114 2 _ 2 _ 97 _ _ 0 2 -1.253
185 24 R1 27117 27090 26731 387 360 99 _ _ _ 99 _ _ 0 196 -1.219
186 R1 27276 27231 27142 135 90 0 _ _ _ 0 _ _ 99 0 -1.239
187 R1 27405 27375 27280 126 96 4 _ _ _ 4 _ _ 95 4 -1.307
188 R2 27743 27743 27654 90 90 0 _ _ _ _ 0 _ 99 0 -1.310
189 F2 27833 27836 27934 102 99 0 _ 0 _ _ _ _ 99 0 -1.427
190 F1 27904 27952 28092 189 141 7 7 _ _ _ _ _ 92 7 -1.317
191 25 F2 28001 28025 28141 141 117 95 _ 95 _ _ _ _ 4 95 -1.284
192 R1 28272 28203 28081 192 123 70 _ _ _ 70 _ _ 29 70 -1.319
193 F1 28240 28240 28362 123 123 0 0 _ 99 _ _ 0 0 0 -1.434
194 R3 28390 28375 28154 237 222 0 _ _ 99 _ _ 0 0 0 -1.331
195 R2 28544 28544 28383 162 162 0 _ _ 99 _ 0 _ 0 0 -1.403
196 F1 28387 28417 28548 162 132 0 0 _ 99 _ _ _ 0 0 -1.393
197 F1 28591 28663 28791 201 129 0 0 _ 99 _ 0 _ 0 0 -1.460
198 R2 28988 28940 28812 177 129 0 _ _ 99 _ 0 0 0 0 -1.442
199 R3 29005 28885 28766 240 120 0 _ _ 99 _ _ 0 0 0 -1.343
200 R1 29019 28977 28885 135 93 0 _ _ 99 0 0 0 0 0 -1.354
201 26 F3 28155 28185 29195 1041 1011 99 _ _ 99 _ _ _ 0 891 -1.249
202 F1 28987 28993 29244 258 252 0 0 _ _ _ _ _ 99 0 -1.434
203 R2 29579 29561 29430 150 132 0 99 _ _ _ 0 _ 0 0 -1.207
204 R1 29622 29616 29521 102 96 0 98 _ _ 0 _ _ 1 0 -1.321
205 R3 29866 29836 29702 165 135 0 99 _ 0 _ 0 0 0 0 -1.290
206 27 F1 29263 29263 29946 684 684 99 99 _ _ _ _ _ 0 395 -1.187
207 End = 29940
209 Original Genes = 27
210 Potential Genes = 27
211 Avg Olaps = 0.1
212 Potential Changes = 2
213 Potential Rejects = 2
214 Sure Rejects = 2
216 Original Genes = 27
217 Potential Genes = 25
218 Avg Olaps = 0.0
219 Potential Changes = 0
220 Potential Rejects = 0
221 Sure Rejects = 0
223 Original Genes = 27
224 Potential Genes = 25
225 Avg Olaps = 0.0
226 Potential Changes = 0
227 Potential Rejects = 0
228 Sure Rejects = 0
231 Putative Genes:
232 1 292 1620 [+1 L=1329 r=-1.219]
233 2 2349 2233 [-1 L= 117 r=-1.208]
234 3 3279 4397 [+3 L=1119 r=-1.201]
235 4 5062 6156 [+1 L=1095 r=-1.184]
236 5 6156 6617 [+3 L= 462 r=-1.205]
237 6 6686 8602 [+2 L=1917 r=-1.218]
238 7 8624 11125 [+2 L=2502 r=-1.206]
239 8 11133 12119 [+3 L= 987 r=-1.229]
240 10 12715 13449 [+1 L= 735 r=-1.211]
241 12 14805 13807 [-1 L= 999 r=-1.279]
242 13 15776 15219 [-3 L= 558 r=-1.295]
243 14 15855 17459 [+3 L=1605 r=-1.232]
244 15 17484 18374 [+3 L= 891 r=-1.206]
245 16 19407 18322 [-1 L=1086 r=-1.187]
246 17 19980 20192 [+3 L= 213 r=-1.320]
247 18 20749 20189 [-2 L= 561 r=-1.215]
248 19 20801 21703 [+2 L= 903 r=-1.192]
249 20 21851 22351 [+2 L= 501 r=-1.193]
250 21 22359 23099 [+3 L= 741 r=-1.221]
251 22 23118 23723 [+3 L= 606 r=-1.186]
252 23 24216 25895 [+3 L=1680 r=-1.261]
253 24 27090 26731 [-1 L= 360 r=-1.219]
254 25 28025 28141 [+2 L= 117 r=-1.284]
255 26 28185 29195 [+3 L=1011 r=-1.249]
256 27 29263 6 [+1 L= 684 r=-1.187]