t/data/L77119.hmmer

   1 hmmpfam - search one or more sequences against HMM database
   2 HMMER 2.2g (August 2001)
   3 Copyright (C) 1992-2001 HHMI/Washington University School of Medicine
   4 Freely distributed under the GNU General Public License (GPL)
   5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
   6 HMM file:                 Pfam
   7 Sequence file:            L77119.faa
   8 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
   9
  10 Query sequence: gi|1522636|gb|AAC37060.1|
  11 Accession:      [none]
  12 Description:    M. jannaschii predicted coding region MJECS02 [Methanococcus jannaschii]
  13
  14 Scores for sequence family classification (score includes all domains):
  15 Model       Description                                 Score    E-value  N
  16 --------    -----------                                 -----    ------- ---
  17 Methylase_M Type I restriction modification system, M  -105.2     0.0022   1
  18
  19 Parsed for domains:
  20 Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
  21 --------    ------- ----- -----    ----- -----      -----  -------
  22 Methylase_M   1/1     280   481 ..     1   279 []  -105.2   0.0022
  23
  24 Alignments of top-scoring domains:
  25 Methylase_M: domain 1 of 1, from 280 to 481: score -105.2, E = 0.0022
  26                    *->lrnELentLWavADkLRGsmDaseYKdyVLGLlFlKYiSdkFlerri
  27                        ++EL+++  av+   R              L+F K++ dk
  28   gi|1522636   280    NTSELDKKKFAVLLMNR--------------LIFIKFLEDK------ 306
  29
  30                    eieerktdtesepsldyakledqyeqlededlekedfyqkkGvFilPsql
  31                    +i+         p +   + +++y   ++   ++ ++y ++      + l
  32   gi|1522636   307 GIV---------PRDLLRRTYEDY---KKSNVLI-NYYDAY-L----KPL 338
  33
  34                    FwdfikeaeknkldedigtdldkifseledqialgypaSeedfkGlfpdl
  35                    F++++   e ++  ++++ + +    ++      + +       Glf ++
  36   gi|1522636   339 FYEVLNTPEDER--KENIRT-NPYYKDIPYL---N-G-------GLFRSN 374
  37
  38                    dfnsnkLgskaqarnetLtelidlfselelgtPmHNG.dfeelgikDlfG
  39                    ++  ++ +s+   +ne ++e+i+ +++ +++     G++ +el   D++G
  40   gi|1522636   375 NV--PNELSFTIKDNEIIGEVINFLERYKFTLSTSEGsEEVELNP-DILG 421
  41
  42                    DaYEYLLgkFAeneGKsGGeFYTPqeVSkLiaeiLtigqpsegdfsIYDP
  43                     +YE L+   Ae   K+ G +YTP e++  ia+ + i+  ++
  44   gi|1522636   422 YVYEKLINILAEKGQKGLGAYYTPDEITSYIAKNT-IEPIVVE------- 463
  45
  46                    AcGSGSLllqaskflgehdgkrnaisyYGQEsn<-*
  47                              +++ ++    k+n+i +    s+
  48   gi|1522636   464 ---------RFKEIIK--NWKINDINF----ST    481
  49
  50 //