Bio::DB::TFBS namespace has been moved to its own distribution named after itself
[bioperl-live.git] / t / data / bl2seq.blastn.rev
blob38fc34fd34002fc9cbf984bb87452749c702303b
1 Query= 
2          (180 letters)
4 >human
5           Length = 179
7  Score = 54.0 bits (27), Expect = 2e-12
8  Identities = 83/94 (88%), Gaps = 7/94 (7%)
9  Strand = Plus / Minus
11                                                                        
12 Query: 94  gtggctgggctc-tgaagcatttggg--tgagcccagggg-ctcagggcagggcacct-g 148
13            |||||||||||| |||||||| ||||  |||||||||||| | || |||||||||||| |
14 Sbjct: 94  gtggctgggctcgtgaagcatgtgggggtgagcccaggggccccaaggcagggcacctgg 35
16                                              
17 Query: 149 ccttcag-cggcctcag-cctgcctgtctcccag 180
18            ||||||| | ||||||| ||||||||||||||||
19 Sbjct: 34  ccttcagcctgcctcagccctgcctgtctcccag 1
22 Lambda     K      H
23     1.37    0.711     1.31 
25 Gapped
26 Lambda     K      H
27     1.37    0.711     1.31 
30 Matrix: blastn matrix:1 -3
31 Gap Penalties: Existence: 5, Extension: 2
32 Number of Hits to DB: 6
33 Number of Sequences: 0
34 Number of extensions: 6
35 Number of successful extensions: 6
36 Number of sequences better than 10.0: 1
37 length of query: 180
38 length of database: 179
39 effective HSP length: 6
40 effective length of query: 174
41 effective length of database: 173
42 effective search space:    30102
43 effective search space used:    30102
44 T: 0
45 A: 30
46 X1: 6 (11.9 bits)
47 X2: 15 (29.7 bits)
48 S1: 12 (24.3 bits)
49 S2: 6 (12.4 bits)