t/data/hmmpfam_fake.out

   1 hmmpfam - search a single seq against HMM database\r
   2 HMMER 2.1.1 (Dec 1998)\r
   3 Copyright (C) 1992-1998 Washington University School of Medicine\r
   4 HMMER is freely distributed under the GNU General Public License (GPL).\r
   5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\r
   6 HMM file:                 pfam\r
   7 Sequence file:            /home/birney/src/wise2/example/road.pep\r
   8 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\r
   9 Query:  roa1_drome  \r
  10 \r
  11 Scores for sequence family classification (score includes all domains):\r
  12 Model    Description                                    Score    E-value  N \r
  13 -------- -----------                                    -----    ------- ---\r
  14 SEED                                                    146.1    6.3e-40   2\r
  15 TEST                                                      5.0        7.2   1\r
  16 \r
  17 Parsed for domains:\r
  18 Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value\r
  19 -------- ------- ----- -----    ----- -----      -----  -------\r
  20 SEED       1/2      33   103 ..     1    77 []    71.2  2.2e-17\r
  21 SEED       2/2     124   194 ..     1    77 []    75.5  1.1e-18\r
  22 \r
  23 Alignments of top-scoring domains:\r
  24 SEED: domain 1 of 2, from 33 to 103: score 71.2, E = 2.2e-17\r
  25                    *->lfVgNLppdvteedLkdlFskfGpivsikivrDiiekpketgkskGf\r
  26                       lf+g+L + +t+e Lk++F+k G iv++ +++D     + t++s+Gf\r
  27   roa1_drome    33    LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKD-----PRTKRSRGF 74   \r
  28 \r
  29                    aFVeFeseedAekAlealnG.kelggrklrv<-*\r
  30                    +F+++  ++  + A +    +++++gr+++    \r
  31   roa1_drome    75 GFITYSHSSMIDEAQK--SRpHKIDGRVVEP    103  \r
  32 \r
  33 SEED: domain 2 of 2, from 124 to 194: score 75.5, E = 1.1e-18\r
  34                    *->lfVgNLppdvteedLkdlFskfGpivsikivrDiiekpketgkskGf\r
  35                       lfVg L  d +e+ ++d+F++fG iv+i+iv+D     ketgk +Gf\r
  36   roa1_drome   124    LFVGALKDDHDEQSIRDYFQHFGNIVDINIVID-----KETGKKRGF 165  \r
  37 \r
  38                    aFVeFeseedAekAlealnGkelggrklrv<-*\r
  39                    aFVeF++++ ++k +     ++l+g+ + v   \r
  40   roa1_drome   166 AFVEFDDYDPVDKVVL-QKQHQLNGKMVDV    194  \r
  41 \r
  42 //\r
  43 Query:  roa2_drome  \r
  44 \r
  45 Scores for sequence family classification (score includes all domains):\r
  46 Model    Description                                    Score    E-value  N \r
  47 -------- -----------                                    -----    ------- ---\r
  48 SEED                                                    146.1    6.3e-40   2\r
  49 \r
  50 Parsed for domains:\r
  51 Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value\r
  52 -------- ------- ----- -----    ----- -----      -----  -------\r
  53 SEED       1/2      33   103 ..     1    77 []    71.2  2.2e-17\r
  54 SEED       2/2     124   194 ..     1    77 []    75.5  1.1e-18\r
  55 //