| blob | d686ddc57489e68d8cc121919cdf6ad4ccde6f25 |
1 # hmmscan :: search sequence(s) against a profile database
2 # HMMER 3.0 (March 2010); http://hmmer.org/
3 # Copyright (C) 2010 Howard Hughes Medical Institute.
4 # Freely distributed under the GNU General Public License (GPLv3).
5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
6 # query sequence file: BA000019.orf37.fasta
7 # target HMM database: /data/biodata/HMMerDB/Pfam-A.hmm
8 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
10 Query: BA000019.orf37 [L=1418]
11 Scores for complete sequence (score includes all domains):
12 --- full sequence --- --- best 1 domain --- -#dom-
13 E-value score bias E-value score bias exp N Model Description
14 ------- ------ ----- ------- ------ ----- ---- -- -------- -----------
15 3.1e-32 111.0 11.8 7.6e-20 71.3 2.3 6.4 6 PPC Bacterial pre-peptidase C-terminal domain
16 4.7e-13 47.9 92.9 0.0022 17.8 3.3 10.0 3 HemolysinCabind Hemolysin-type calcium-binding repeat (2 cop
19 Domain annotation for each model (and alignments):
20 >> PPC Bacterial pre-peptidase C-terminal domain
21 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
22 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
23 1 ? 0.5 0.2 0.16 9.3e+02 4 59 .. 117 183 .. 84 192 .. 0.58
24 2 ? -0.6 0.0 0.36 2.1e+03 12 58 .. 347 388 .. 311 397 .. 0.46
25 3 ! 71.3 2.3 1.3e-23 7.6e-20 1 69 [. 470 549 .. 470 550 .. 0.95
26 4 ? -3.2 0.1 2 1.2e+04 15 25 .. 582 603 .. 567 626 .. 0.51
27 5 ? -1.1 0.6 0.5 3e+03 13 36 .. 987 1019 .. 974 1072 .. 0.49
28 6 ! 54.4 1.0 2.4e-18 1.4e-14 1 69 [. 1087 1168 .. 1087 1169 .. 0.85
30 Alignments for each domain:
31 == domain 1 score: 0.5 bits; conditional E-value: 0.16
32 EEEE--S----EEEEEECTSS...EEEEE.EEEES.E.SSSSTTC--...-B--SEEEEEESS..... CS
33 PPC 4 vykfevpaggsltididggsg...dldLy.lldgngp.slaaydans...apsgndeyiefta....p 59
34 + +f+++ag+ ++i d++s ++L +++++ + ++ + n+ + gn+++++ft p
35 BA000019.orf37 117 TATFTLEAGDDYSIG-DSSSEvtfYASLEeVPTPSVTpEISLSVENAtisEAEGNTTTLRFTLseppP 183
36 446667777766665.4444222222244455555322222222222233455566777777755544 PP
38 == domain 2 score: -0.6 bits; conditional E-value: 0.36
39 ---EEEEEECTSSEEEEEEEEES.ESSSSTTC---B--SEEEEEESS CS
40 PPC 12 ggsltididggsgdldLylldgngpslaaydansapsgndeyiefta 58
41 g +++ + g+ dl+++ + + ++d + +de++ f+
42 BA000019.orf37 347 GEIVAVR-SDGF-DLKITAKSATIQLPIQADGVA---ESDEQVVFSL 388
43 1112222.2233.444444444444444433333...2556666665 PP
45 == domain 3 score: 71.3 bits; conditional E-value: 1.3e-23
46 -EEEEEE--S----EEEEEECTSS......EEEEEEEEES.ESSSSTTC--.....-B--SEEEEEESS.----EEEEEE CS
47 PPC 1 dvDvykfevpaggsltididggsg......dldLylldgngpslaaydans.....apsgndeyieftapqaGtYyvaVs 69
48 dvD+yk+e++ag++++id+d++++ d++L+l+d +g+ la++d+ + + sg ++yieftap++G+Yyv+V+
49 BA000019.orf37 470 DVDFYKVELKAGDTIKIDTDSNQFadgrkvDTWLRLFDVSGTELASNDDGAapnevFDSGFQSYIEFTAPSDGVYYVGVT 549
50 8******************999999***99999******************8888877789*****************96 PP
52 == domain 4 score: -3.2 bits; conditional E-value: 2
53 EEEEEECTSS...........E CS
54 PPC 15 ltididggsg...........d 25
55 l+i++++ +g +
56 BA000019.orf37 582 LNISLNNPTGfvagateippgN 603
57 5555555544333333333331 PP
59 == domain 5 score: -1.1 bits; conditional E-value: 0.5
60 --.EEEEEECTSS.....EEEEEEEEES....E CS
61 PPC 13 gs.ltididggsg.....dldLylldgng...p 36
62 + l+++i + ++ ++ +ll g+g +
63 BA000019.orf37 987 TAsLSVAIANDNIaegveTATVTLLAGDGyqiN 1019
64 444777775555555665444555555542221 PP
66 == domain 6 score: 54.4 bits; conditional E-value: 2.4e-18
67 -EEEEEE--S----EEEEEECTSSEEE.....EEEEEES.E.....SSSSTTC--...-B--SEEEEEESS.----EEEEEE CS
68 PPC 1 dvDvykfevpaggsltididggsgdld.....Lylldgngp.....slaaydans...apsgndeyieftapqaGtYyvaVs 69
69 dvD+yk+++++g +l+i++d +d++ L+++d++g+ + ++++a++ ++ nd+y+efta ++GtYyv++s
70 BA000019.orf37 1087 DVDLYKVNLKVGEKLSINVDAAEIDSKllyaqLRVFDAEGNelaktDFDDFQAAPdevFSAFNDPYLEFTAETTGTYYVGIS 1168
71 8***********************9999788888*****96222225555777777777777******************98 PP
73 >> HemolysinCabind Hemolysin-type calcium-binding repeat (2 copies)
74 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
75 --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
76 1 ! 5.9 0.5 0.0026 16 2 13 .. 1214 1225 .. 1213 1225 .. 0.89
77 2 ! 10.8 3.1 6.8e-05 0.41 1 18 [] 1231 1248 .. 1231 1248 .. 0.95
78 3 ! 11.4 2.4 4.3e-05 0.26 4 18 .] 1243 1257 .. 1240 1257 .. 0.91
80 Alignments for each domain:
81 == domain 1 score: 5.9 bits; conditional E-value: 0.0026
82 ---S-EEEE--- CS
83 HemolysinCabind 2 GgaGnDtLyGga 13
84 G++G+DtL G++
85 BA000019.orf37 1214 GTSGDDTLIGTD 1225
86 99*******986 PP
88 == domain 2 score: 10.8 bits; conditional E-value: 6.8e-05
89 E---S-EEEE---S-EEE CS
90 HemolysinCabind 1 yGgaGnDtLyGgaGnDtl 18
91 +G++GnD+Ly +G+D+l
92 BA000019.orf37 1231 FGNGGNDILYARGGDDKL 1248
93 69**************87 PP
95 == domain 3 score: 11.4 bits; conditional E-value: 4.3e-05
96 -S-EEEE---S-EEE CS
97 HemolysinCabind 4 aGnDtLyGgaGnDtl 18
98 +G+D L+GgaG+D l
99 BA000019.orf37 1243 GGDDKLFGGAGDDLL 1257
100 6************87 PP
104 Internal pipeline statistics summary:
105 -------------------------------------
106 Query sequence(s): 1 (1418 residues)
107 Target model(s): 11912 (2158902 nodes)
108 Passed MSV filter: 231 (0.0193922); expected 238.2 (0.02)
109 Passed bias filter: 133 (0.0111652); expected 238.2 (0.02)
110 Passed Vit filter: 15 (0.00125923); expected 11.9 (0.001)
111 Passed Fwd filter: 2 (0.000167898); expected 0.1 (1e-05)
112 Initial search space (Z): 11912 [actual number of targets]
113 Domain search space (domZ): 2 [number of targets reported over threshold]
114 # CPU time: 0.57u 0.17s 00:00:00.74 Elapsed: 00:00:00.39
115 # Mc/sec: 7849.55
116 //