t/data/hmmscan_qry_stop.txt

   1 # hmmscan :: search sequence(s) against a profile database
   2 # HMMER 3.0 (March 2010); http://hmmer.org/
   3 # Copyright (C) 2010 Howard Hughes Medical Institute.
   4 # Freely distributed under the GNU General Public License (GPLv3).
   5 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
   6 # query sequence file:             FQ377874.faa
   7 # target HMM database:             HMM_Profiles.hmm
   8 # output directed to file:         FQ377874.txt
   9 # number of worker threads:        8
  10 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  11
  12 Query:       gi|328801650|gb|CBW53803.1|  [L=243]
  13 Description: IS1296 A transposase protein B [Mycoplasma mycoides subsp. capri LC str. 95010]
  14 Scores for complete sequence (score includes all domains):
  15    --- full sequence ---   --- best 1 domain ---    -#dom-
  16     E-value  score  bias    E-value  score  bias    exp  N  Model                       Description
  17     ------- ------ -----    ------- ------ -----   ---- --  --------                    -----------
  18     2.3e-88  289.2  12.7    3.8e-88  288.5   8.8    1.3  1  IS3_IS150_ORF2.curated
  19
  20
  21 Domain annotation for each model (and alignments):
  22 >> IS3_IS150_ORF2.curated
  23    #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
  24  ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
  25    1 !  288.5   8.8   7.6e-89   3.8e-88     145     386 ..       4     236 ..       1     238 [. 0.94
  26
  27   Alignments for each domain:
  28   == domain 1    score: 288.5 bits;  conditional E-value: 7.6e-89
  29        IS3_IS150_ORF2.curated 145 eiyhrhrgrYGYRRitlaLrlSEkrGkqiNhKrvqrLMkelgLkSv.iRvKk.kyrsyrgevgivadNlLqRqFkadkPnek 224
  30                                    i+ ++ + YGYRR++++L      G  +NhK++ rL kelg      R K  +y sy+g+vg+ adN+L R+F +   n k
  31   gi|328801650|gb|CBW53803.1|   4 DIFSKSFETYGYRRLKITLK---SKGYIVNHKKILRLTKELGVQCIkFRTKNgRYSSYKGTVGKIADNVLKRNFHSLQAN-K 81
  32                                   69999***************...*******************87642344434**********************99998.5 PP
  33
  34        IS3_IS150_ORF2.curated 225 W.vTDVTEFkvgggkKlYLSpIlDLFNrEIisyslserpdaklVkktLerAlkklgpdevpvlHSPRLLSDqGwqYqskay. 304
  35                                     +TDVTEFkv+ g+KlYLSpI+DL+N EIisys  + p+++l+  +L++Alkk+ ++ +++ HS     DqG++Yq+  +
  36   gi|328801650|gb|CBW53803.1|  82 L*CTDVTEFKVN-GQKLYLSPIIDLYNDEIISYSIQTNPNLNLTNSMLDKALKKVKNTNGLLIHS-----DQGFHYQH--Is 155
  37                                   788*********.****************************************************.....******98..75 PP
  38
  39        IS3_IS150_ORF2.curated 305 .remLeeqGirqSMSRKGnclDNavmEsffgtLKsEifygnlkkFeslddLeraItdYIey.YNheRIhlKLkgltPveYRt 384
  40                                    + +Lee  i qSMSRKGnclDNa +E+ffg LK Ei+y   +k++s+++L++ I+ YI y YN+ RI++KLkgl+Pv+ R
  41   gi|328801650|gb|CBW53803.1| 156 *AKKLEENNITQSMSRKGNCLDNAIIENFFGLLKQEIYY--GEKYNSVEELTKRIHKYI-Y*YNNIRIKEKLKGLSPVQFRK 234
  42                                   6689***********************************..67****************.*********************9 PP
  43
  44        IS3_IS150_ORF2.curated 385 qr 386
  45                                   q+
  46   gi|328801650|gb|CBW53803.1| 235 QS 236
  47                                   97 PP
  48
  49
  50
  51 Internal pipeline statistics summary:
  52 -------------------------------------
  53 Query sequence(s):                         1  (243 residues)
  54 Target model(s):                         116  (57162 nodes)
  55 Passed MSV filter:                        38  (0.327586); expected 2.3 (0.02)
  56 Passed bias filter:                       38  (0.327586); expected 2.3 (0.02)
  57 Passed Vit filter:                        31  (0.267241); expected 0.1 (0.001)
  58 Passed Fwd filter:                         1  (0.198276); expected 0.0 (1e-05)
  59 Initial search space (Z):                116  [actual number of targets]
  60 Domain search space  (domZ):               1  [number of targets reported over threshold]
  61 # CPU time: 0.91u 0.30s 00:00:01.20 Elapsed: 00:00:01.71
  62 # Mc/sec: 8.09
  63 //