Bio::DB::TFBS namespace has been moved to its own distribution named after itself
[bioperl-live.git] / t / data / psi_xml.dat
blob214bf15f66465ed1e43509d7057bc5aba8d5f0fc
1 <entrySet xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:psi="net:sf:psidev:mi" xmlns="net:sf:psidev:mi" xmlns:xin="http://dip.doe-mbi.ucla.edu/xml/XIN" xsi:schemaLocation="net:sf:psidev:mi MIF.xsd" level="1" version="1">
2 <entry>
3 <interactorList>
4 <proteinInteractor id="G_1">
5 <names>
6 <shortLabel/>
7 <fullName>adenine specific DNA methyltransferase (dpnA) HP0050</fullName>
8 </names>
9 <xref>
10 <primaryRef db="DIP" id="3048N"/>
11 <secondaryRef db="PIR" id="B64526"/>
12 <secondaryRef db="GI" id="2313123"/>
13 <secondaryRef db="RefSeq" id="NP_206851"/>
14 </xref>
15 <organism ncbiTaxId="85962">
16 <names>
17 <shortLabel/>
18 <fullName>Helicobacter pylori 26695</fullName>
19 </names>
20 </organism>
21 </proteinInteractor>
22 <proteinInteractor id="G_2">
23 <names>
24 <shortLabel/>
25 <fullName>hypothetical HP0001</fullName>
26 </names>
27 <xref>
28 <primaryRef db="DIP" id="3047N"/>
29 <secondaryRef db="SWP" id="O24853"/>
30 <secondaryRef db="PIR" id="A64520"/>
31 <secondaryRef db="GI" id="2313078"/>
32 <secondaryRef db="RefSeq" id="NP_206803"/>
33 </xref>
34 <organism ncbiTaxId="85962">
35 <names>
36 <shortLabel/>
37 <fullName>Helicobacter pylori 26695</fullName>
38 </names>
39 </organism>
40 </proteinInteractor>
41 <proteinInteractor id="G_4">
42 <names>
43 <shortLabel/>
44 <fullName>GTP-binding membrane protein (lepA) HP0355</fullName>
45 </names>
46 <xref>
47 <primaryRef db="DIP" id="3049N"/>
48 <secondaryRef db="SWP" id="O25122"/>
49 <secondaryRef db="PIR" id="C64564"/>
50 <secondaryRef db="GI" id="2313456"/>
51 <secondaryRef db="RefSeq" id="NP_207153"/>
52 </xref>
53 <organism ncbiTaxId="85962">
54 <names>
55 <shortLabel/>
56 <fullName>Helicobacter pylori 26695</fullName>
57 </names>
58 </organism>
59 </proteinInteractor>
60 <proteinInteractor id="G_X">
61 <names>
62 <shortLabel/>
63 <fullName>bogus-binding membrane protein (lepA) HP0355</fullName>
64 </names>
65 <xref>
66 <primaryRef db="DIP" id="N"/>
67 <secondaryRef db="SWP" id="O2"/>
68 <secondaryRef db="PIR" id="C4"/>
69 <secondaryRef db="GI" id="2"/>
70 <secondaryRef db="RefSeq" id="207153"/>
71 </xref>
72 <organism ncbiTaxId="85962">
73 <names>
74 <shortLabel/>
75 <fullName>Helicobacter pylori 26695</fullName>
76 </names>
77 </organism>
78 </proteinInteractor>
80 </interactorList>
81 <interactionList>
82 <interaction>
83 <experimentList>
84 <experimentDescription id="DIP_5317X">
85 <bibref>
86 <xref>
87 <primaryRef db="pubmed" id="11196647"/>
88 </xref>
89 </bibref>
90 <interactionDetection>
91 <names>
92 <shortLabel>Two hybrid test</shortLabel>
93 </names>
94 <xref>
95 <primaryRef db="DO" id="DO:00018"/>
96 <secondaryRef db="PSI" id="MI:0018"/>
97 </xref>
98 </interactionDetection>
99 </experimentDescription>
100 </experimentList>
101 <participantList>
102 <proteinParticipant>
103 <proteinInteractorRef ref="G_1"/>
104 </proteinParticipant>
105 <proteinParticipant>
106 <proteinInteractorRef ref="G_2"/>
107 </proteinParticipant>
108 </participantList>
109 <xref>
110 <primaryRef db="DIP" id="4305E"/>
111 </xref>
112 </interaction>
113 <interaction>
114 <experimentList>
115 <experimentDescription id="DIP_5318X">
116 <bibref>
117 <xref>
118 <primaryRef db="pubmed" id="11196647"/>
119 </xref>
120 </bibref>
121 <interactionDetection>
122 <names>
123 <shortLabel>Two hybrid test</shortLabel>
124 </names>
125 <xref>
126 <primaryRef db="DO" id="DO:00018"/>
127 <secondaryRef db="PSI" id="MI:0018"/>
128 </xref>
129 </interactionDetection>
130 </experimentDescription>
131 </experimentList>
132 <participantList>
133 <proteinParticipant>
134 <proteinInteractorRef ref="G_4"/>
135 </proteinParticipant>
136 <proteinParticipant>
137 <proteinInteractorRef ref="G_2"/>
138 </proteinParticipant>
139 </participantList>
140 <xref>
141 <primaryRef db="DIP" id="4306E"/>
142 </xref>
143 </interaction>
144 <interaction>
145 <experimentList>
146 <experimentDescription id="DIP_5318X">
147 <bibref>
148 <xref>
149 <primaryRef db="pubmed" id="11196647"/>
150 </xref>
151 </bibref>
152 <interactionDetection>
153 <names>
154 <shortLabel>Two hybrid test</shortLabel>
155 </names>
156 <xref>
157 <primaryRef db="DO" id="DO:00018"/>
158 <secondaryRef db="PSI" id="MI:0018"/>
159 </xref>
160 </interactionDetection>
161 </experimentDescription>
162 </experimentList>
163 <participantList>
164 <proteinParticipant>
165 <proteinInteractorRef ref="G_X"/>
166 </proteinParticipant>
167 <proteinParticipant>
168 <proteinInteractorRef ref="G_2"/>
169 </proteinParticipant>
170 </participantList>
171 <xref>
172 <primaryRef db="DIP" id="1E"/>
173 </xref>
174 </interaction>
176 </interactionList>
177 </entry>
178 </entrySet>