Bio::DB::TFBS namespace has been moved to its own distribution named after itself
[bioperl-live.git] / t / data / roa1.genbank
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1 LOCUS       AI129902       37 bp    mRNA            EST       27-OCT-1998
2 DEFINITION  qc41b07.x1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone
3             IMAGE:1712149 3' similar to SW:ROA1_SCHAM P21522 HETEROGENEOUS
4             NUCLEAR RIBONUCLEOPROTEIN A1, A2/B1 HOMOLOG. ;contains MSR1.b2 MSR1
5             repetitive element ;, mRNA sequence.
6 ACCESSION   AI129902
7 NID         g3598416
8 VERSION     AI129902.1  GI:3598416
9 KEYWORDS    EST.
10 SOURCE      human.
11   ORGANISM  Homo sapiens
12             Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
13             Eutheria; Primates; Catarrhini; Hominidae; Homo.
14 REFERENCE   1  (bases 1 to 37)
15   AUTHORS   NCI-CGAP http://www.ncbi.nlm.nih.gov/ncicgap.
16   TITLE     National Cancer Institute, Cancer Genome Anatomy Project (CGAP),
17             Tumor Gene Index
18   JOURNAL   Unpublished (1997)
19 COMMENT     On May 8, 1995 this sequence version replaced gi:800643
21             Contact: Robert Strausberg, Ph.D.
22             Tel: (301) 496-1550
23             Email: Robert_Strausberg@nih.gov
24             This clone is available royalty-free through LLNL ; contact the
25             IMAGE Consortium (info@image.llnl.gov) for further information. 
26             Trace considered overall poor quality
27             Insert Length: 525   Std Error: 0.00
28             Seq primer: -40m13 fwd. ET from Amersham
29             High quality sequence stop: 1.
30 FEATURES             Location/Qualifiers
31      source          1..37
32                      /organism="Homo sapiens"
33                      /db_xref="taxon:9606"
34                      /clone="IMAGE:1712149"
35                      /clone_lib="Soares_pregnant_uterus_NbHPU"
36                      /sex="female"
37                      /dev_stage="adult"
38                      /lab_host="DH10B"
39                      /note="Organ: uterus; Vector: pT7T3-Pac; Site_1: Not I;
40                      Site_2: Eco RI; 1st strand cDNA was primed with a Not I -
41                      oligo(dT) primer [5'
42                      AACTGGAAGAATTCGCGGCCGCCTTTTTTTTTTTTTTTTTT 3'],
43                      double-stranded cDNA was ligated to Eco RI adaptors
44                      (Pharmacia), digested with Not I and cloned into the Not I
45                      and Eco RI sites of the modified pT7T3 vector. Library
46                      went through one round of normalization.  Library
47                      constructed by M. Fatima Bonaldo."
48 BASE COUNT        5 a     28 c      2 g      2 t
49 ORIGIN      
50         1 ctccgcgcca actcccccca cccccccccc acacccc
52 LOCUS       BAB68554                 141 aa            linear   VRT 11-APR-2002
53 DEFINITION  alpha D-globin [Aldabrachelys elephantina].
54 ACCESSION   BAB68554
55 PID         g15824047
56 VERSION     BAB68554.1  GI:15824047
57 DBSOURCE    accession AB072353.1
58 KEYWORDS    .
59 SOURCE      Aldabra giant tortoise.
60   ORGANISM  Aldabrachelys elephantina
61             Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
62             Testudines; Cryptodira; Testudinoidea; Testudinidae; Aldabrachelys.
63 REFERENCE   1
64   AUTHORS   Shishikura,F.
65   TITLE     The primary structure of hemoglobin D from the Aldabra giant
66             tortoise, Geochelone gigantea
67   JOURNAL   Zoolog. Sci. 19, 197-206 (2002)
68 REFERENCE   2  (residues 1 to 141)
69   AUTHORS   Shishikura,F.
70   TITLE     Direct Submission
71   JOURNAL   Submitted (29-SEP-2001) Fumio Shishikura, Nihon University School
72             of Medicine, Biology; Oyaguchi-kamimachi, 30-1, Itabashi-ku, Tokyo
73             173-8610, Japan (E-mail:fshishi@med.nihon-u.ac.jp,
74             Tel:81-3-3972-8111(ex.2291), Fax:81-3-3972-0027)
75 FEATURES             Location/Qualifiers
76      source          1..141
77                      /organism="Aldabrachelys elephantina"
78                      /db_xref="taxon:167804"
79                      /note="synonym:Dipsochelys dussumieri~synonym:Geochelone
80                      gigantea"
81      Protein         1..141
82                      /product="alpha D-globin"
83      CDS             1..141
84                      /coded_by="join(AB072353.1:1..92,AB072353.1:307..511,
85                      AB072353.1:739..>864)"
86                      /note="hemoglobin D"
87 ORIGIN      
88         1 mlteddkqli qhvwekvleh qedfgaeale rmfivypstk tyfphfdlhh dseqirhhgk
89        61 kvvgalgdav khidnlsatl selsnlhayn lrvdpvnfkl lshcfqvvlg ahlgreytpq
90       121 vqvaydkfla avsavlaeky r