1 !autogenerated-by: DAG-Edit version 1.316
3 !date: Wed Feb 19 16:38:05 SGT 2003
4 !version: $Revision: 1.1 $
6 !type: < PARTOF Part of
7 !Sequence_ontology_Lite_Version
8 !This is only for comment; not for implementation
9 !Comments to: song-devel@sourceforge.net
10 $Sequence_Feature_Ontology ; SO:0000000
12 %feature ; SO:20000000
13 %chromosome ; GO:0000005
14 <centromere ; GO:0000004
15 <telomere ; GO:0000003
17 <regulatory_region ; SO:0005836
18 %enhancer ; SO:0000165
19 %TF_binding_site ; SO:0000235 ; synonym:transcription_factor_binding_site % nucleotide_motif ; SO:0000714
20 <transcript ; SO:0000673
21 %primary_transcript ; SO:0000185 ; synonym:precursor_RNA
24 %noncoding_primary_transcript ; SO:0000483
25 %micro_RNA_primary_transcript ; SO:0000647
26 %transfer_RNA_primary_transcript ; SO:0000210
27 <splice_site ; SO:0000162
28 %splice_acceptor ; SO:0000164 ; synonym:acceptor_splice_site
29 %transsplice_acceptor_site ; SO:0000706
30 %splice_donor ; SO:0000163 ; synonym:donor_splice_site
31 <transcription_start_site ; SO:0000315
32 %processed_transcript ; SO:0000233
33 <exon_junction ; SO:0000333
34 %mRNA ; SO:0000234 ; synonym:messenger_RNA
35 <coding_sequence ; SO:0000316
36 <coding_end ; SO:0000327
37 <coding_start ; SO:0000323
38 <untranslated_region ; SO:0000203 ; synonym:UTR
39 %five_prime_untranslated_region ; SO:0000204 ; synonym:5'-UTR
40 %three_prime_untranslated_region ; SO:0000205 ; synonym:3'-UTR
41 %ncRNA ; SO:0000655 ; synonym:noncoding_RNA
42 %miRNA ; SO:0000276 ; synonym:micro_RNA
43 %rRNA ; SO:0000252 ; synonym:ribosomal_RNA
44 %tRNA ; SO:0000253 ; synonym:transfer_RNA
45 <polyA_site ; SO:0000553
47 %nucleotide_to_nucleotide_match ; SO:0000347
48 %cross_genome_match ; SO:0000177
49 %expressed_sequence_match ; GO:0000007
50 %cDNA_match ; SO:0000689 % RNAi_reagent ; GO:0000009
51 %EST_match ; SO:0000668
52 %translated_nucleotide_match ; SO:0000181
53 %nucleotide_to_protein_match ; SO:0000351
54 %nucleotide_motif ; SO:0000714
55 %CpG_island ; SO:0000307
56 %TF_binding_site ; SO:0000235 ; synonym:transcription_factor_binding_site % regulatory_region ; SO:0005836
57 %origin_of_replication ; SO:0000296
58 %pseudogene_region ; SO:0000336
60 %assembly_component ; SO:0000143
62 %golden_path_region ; SO:0000688
64 %cDNA_clone ; GO:0000011
65 <clone_end ; SO:0000103
66 %genomic_clone ; GO:0000012
67 %databank_entry ; SO:2000061
68 %oligonucleotide ; SO:0000696 ; synonym:primer % RNAi_reagent ; GO:0000009
69 %pcr_product ; SO:0000006 ; synonym:amplicon
70 %STS ; GO:0000008 ; synonym:sequence_tag_site
72 %experimental_reagent_region ; SO:0000703
73 %RNAi_reagent ; GO:0000009
74 %cDNA_match ; SO:0000689 % expressed_sequence_match ; GO:0000007
75 %oligonucleotide ; SO:0000696 ; synonym:primer % reagent ; SO:0000695
76 %potential_sequencing_error ; SO:0000701
77 %repeat_region ; SO:0000657
78 %direct_repeat ; SO:0000314
79 %dispersed_repeat ; SO:0000658
80 %inverted_repeat ; SO:0000294
81 %repeat_family ; SO:0000187
82 %transposable_element ; SO:0000101
83 %DNA_transposon ; SO:0000182
84 %retrotransposon ; SO:0000180
85 %LTR_retrotransposon ; SO:0000186
86 %non_LTR_retrotransposon ; SO:0000189
87 %LINE_element ; SO:0000194
88 %SINE_element ; SO:0000206
89 %tandem_repeat ; SO:0000705
90 %microsatellite ; SO:0000289
91 %sequence_variant ; SO:0000109
92 %deletion ; SO:0000159
93 <deletion_junction ; SO:0000687
94 %insertion ; SO:0000667
95 %inversion ; SO:0000697
96 <inversion_junction ; SO:0000692
97 %substitution ; SO:1000002
98 %translocation_junction ; SO:0000691