| blob | 254cae11c492df5aa989c7a220f2b9703e5781cf |
1 ********************************************************************************
2 MEME - Motif discovery tool
3 ********************************************************************************
4 MEME version 4.9.0 (Release date: Wed Oct 3 11:07:26 EST 2012)
6 For further information on how to interpret these results or to get
7 a copy of the MEME software please access http://meme.nbcr.net.
9 This file may be used as input to the MAST algorithm for searching
10 sequence databases for matches to groups of motifs. MAST is available
11 for interactive use and downloading at http://meme.nbcr.net.
12 ********************************************************************************
15 ********************************************************************************
16 REFERENCE
17 ********************************************************************************
18 If you use this program in your research, please cite:
20 Timothy L. Bailey and Charles Elkan,
21 "Fitting a mixture model by expectation maximization to discover
22 motifs in biopolymers", Proceedings of the Second International
23 Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
24 AAAI Press, Menlo Park, California, 1994.
25 ********************************************************************************
28 ********************************************************************************
29 TRAINING SET
30 ********************************************************************************
31 DATAFILE= multibasic-uniq.fa
32 ALPHABET= ACDEFGHIKLMNPQRSTVWY
33 Sequence name Weight Length Sequence name Weight Length
34 ------------- ------ ------ ------------- ------ ------
35 A/chicken/Bangladesh/830 1.0000 21 A/chicken/Egypt/39825/20 1.0000 21
36 A/ck/Indonesia/072/10 1.0000 21 A/duck/Bangladesh/5749/1 1.0000 21
37 A/mallard/Crimea/245/200 1.0000 21 A/environment/Bangladesh 1.0000 21
38 A/chicken/Egypt/111945V/ 1.0000 21 A/avian/New_York/Sg00372 1.0000 21
39 A/chicken/Egypt/1117AF/2 1.0000 21 A/wild_bird_feces/Cheons 1.0000 21
40 A/chicken/India/241272/2 1.0000 21 A/duck/Jiangxi/80/2005 1.0000 21
41 A/chicken/Inhu/BPPVRII/2 1.0000 21 A/duck/Guangxi/668/2004 1.0000 21
42 A/whooper_swan/Hokkaido/ 1.0000 21 A/duck/Vietnam/1/2010 1.0000 21
43 A/avian/New_York/Sg00387 1.0000 21 A/chicken/Cambodia/LC/20 1.0000 21
44 A/mallard/Maryland/786/2 1.0000 21 A/chicken/Egypt/128s/201 1.0000 21
45 A/guinea_fowl/Yangon/834 1.0000 21 A/chicken/WestJava/SmiAc 1.0000 21
46 A/Indonesia/625/2006 1.0000 21 A/Egypt/N07460/2012 1.0000 21
47 A/duck/Victoria/26/1981| 1.0000 21 A/duck/Viet_Nam/TG2401/2 1.0000 21
48 A/chicken/Egypt/398252/2 1.0000 21 A/environment/Maryland/1 1.0000 21
49 A/duck/New_Zealand/41/19 1.0000 21 A/heron/Cambodia/TM068/2 1.0000 21
50 A/chicken/Egypt/10117/20 1.0000 21 A/VietNam/HN31413/2008 1.0000 21
51 A/chicken/Egypt/398214/2 1.0000 21 A/chicken/Egypt/39823/20 1.0000 21
52 A/chicken/Belgium/150VB/ 1.0000 21 A/goose/Fujian/bb/2003 1.0000 21
53 A/Vietnam/UT30259/2004 1.0000 21 A/duck/Yunnan/47/2006 1.0000 21
54 A/chicken/Egypt/10259SF/ 1.0000 21 A/bird/Turkey/Unye_ist06 1.0000 21
55 A/chicken/Bangladesh/11r 1.0000 21 A/chicken/Vietnam/NCVD19 1.0000 21
56 A/swan/England/AV3142149 1.0000 21 A/chicken/Ibaraki/17/200 1.0000 21
57 A/chicken/Nepal/354/2010 1.0000 21 A/duck/Vietnam/NCVD366/2 1.0000 21
58 A/duck/Korea/GJ54/2004|G 1.0000 21 A/muscovy_duck/Vietnam/L 1.0000 21
59 A/duck/Egypt/1130AG/2011 1.0000 21 A/ck/Indonesia/091/10 1.0000 21
60 A/duck/Vietnam/9/2010 1.0000 21 A/duck/Hokkaido/Vac3/200 1.0000 21
61 A/Thailand/WRAIR1720H/20 1.0000 21 A/chicken/Cambodia/022LC 1.0000 21
62 A/spurwinged_goose/Niger 1.0000 21 A/pigeon/Egypt/SHAH5803/ 1.0000 21
63 A/whooper_swan/Mongolia/ 1.0000 21 A/chicken/Shan/2626/2007 1.0000 21
64 A/chicken/Italy/367/97|A 1.0000 21 A/turkey/Italy/1325/2005 1.0000 21
65 A/chicken/Egypt/1158SF/2 1.0000 21 A/chicken/Egypt/398220/2 1.0000 21
66 A/condor/Guangdong/139/2 1.0000 21 A/chicken/Shandong/A1/20 1.0000 21
67 A/chicken/Egypt/11764s/2 1.0000 21 A/swine/NorthSumatra/UT6 1.0000 21
68 A/o.bill_stork/Thailand/ 1.0000 21 A/chicken/Texas/2983132/ 1.0000 21
69 A/chicken/Bangladesh/11V 1.0000 21 A/chicken/Ibaraki/15/200 1.0000 21
70 A/chicken/Shandong/A10/2 1.0000 21 A/duck/Vietnam/OIE1287/2 1.0000 21
71 A/duck/Vietnam/NCVD1161/ 1.0000 21 A/duck/Ireland/113/1983| 1.0000 21
72 A/chicken/EastKalimantan 1.0000 21 A/duck/Vietnam/3/2010 1.0000 21
73 A/Muscovy_duck/Ca_Mau/11 1.0000 21 A/chicken/Turkey/Misinli 1.0000 21
74 A/chicken/Italy/9097/199 1.0000 21 A/mallard/Washington/456 1.0000 21
75 A/duck/Iran/11VIR53161/2 1.0000 21 A/Muscovy_Duck/Vietnam/1 1.0000 21
76 A/duck/Hunan/149/2005 1.0000 21 A/Egypt/4822NAMRU3/2009 1.0000 21
77 A/duck/Vietnam/NCVD1463/ 1.0000 21 A/poultry/Egypt/398256/2 1.0000 21
78 A/turkey/Italy/1980|GQ24 1.0000 21 A/goose/Bangladesh/11VIR 1.0000 21
79 A/mallard/Washington/454 1.0000 21 A/chicken/Cambodia/013LC 1.0000 21
80 A/chicken/Banten/PdglKas 1.0000 21 A/chicken/Vietnam/NCVD03 1.0000 21
81 A/wigeon/Ohio/379/1988|C 1.0000 21 A/chicken/Magelang/BBVW6 1.0000 21
82 A/chicken/Lampung/BPPVRI 1.0000 21 A/chick/Pennsylvania/1/1 1.0000 21
83 A/chicken/Liaoning/A1/20 1.0000 21 A/wild_bird_feces/Cheons 1.0000 21
84 A/chicken/Sikkim/151466/ 1.0000 21 A/environment/ChangSha/2 1.0000 21
85 A/chicken/CentralJava/UT 1.0000 21 A/Vietnam/HN36250/2010 1.0000 21
86 A/chicken/Guiyang/821/20 1.0000 21 A/owstons_civet/VietNam/ 1.0000 21
87 A/chicken/Bangladesh/11r 1.0000 21 A/environment/New_York/1 1.0000 21
88 A/domestic_goose/Hong_Ko 1.0000 21 A/Hubei/1/2010 1.0000 21
89 A/Hunan/1/2009 1.0000 21 A/chicken/Egypt/1123AL/2 1.0000 21
90 A/wood_duck/MD/04623/200 1.0000 21 A/chicken/Shanxi/2/2006 1.0000 21
91 A/quail/Egypt/1171SG/201 1.0000 21 A/duck/France/080036/200 1.0000 21
92 A/chicken/Yangon/182/201 1.0000 21 A/chicken/Scotland/59|X0 1.0000 21
93 A/chicken/Sharkia/CAI41/ 1.0000 21 A/mallard/Sweden/21/2002 1.0000 21
94 A/environment/Bangladesh 1.0000 21 A/chicken/Hebei/A8/2009 1.0000 21
95 A/chicken/Egypt/11VIR445 1.0000 21 A/duck/Guangxi/13/2004 1.0000 21
96 A/duck/France/090043/200 1.0000 21 A/chicken/Denpasar/BBVD1 1.0000 21
97 A/Egypt/N6774/2011 1.0000 21 A/parrot/CA/6032/04|DQ25 1.0000 21
98 A/Cambodia/VN05103/2005 1.0000 21 A_GenBank/heron/Cambodia 1.0000 21
99 A/chicken/Bangladesh/11r 1.0000 21 A/chicken/Tabanan/BBVD14 1.0000 21
100 A/great_cormorant/Tibet/ 1.0000 21 A/Egypt/321NAMRU3/2007 1.0000 21
101 A/chicken/Egypt/10512AG/ 1.0000 21 AHAH5_[11734;11734] 1.0000 21
102 A/Egypt/9174NAMRU3/2009 1.0000 21 A/Indonesia/NIHRD12379/2 1.0000 21
103 A/chicken/Korea/ES/03 1.0000 21 A/avian/New_York/Sg00377 1.0000 21
104 A/chicken/Vietnam/NCVD09 1.0000 21 A/Chicken/TurkeyMus/09rs 1.0000 21
105 A/duck/Hong_Kong/312/197 1.0000 21 A/Vietnam/UT3030/2003 1.0000 21
106 A/crow/Bangladesh/11rs19 1.0000 21 A/duck/Primorie/2633/200 1.0000 21
107 A/Indonesia/UT3006/2005 1.0000 21 A/duck/Qalubia/CAI11/201 1.0000 21
108 A/green_winged_teal/Dela 1.0000 21 A/chicken/Anhui/T5/2006 1.0000 21
109 A/chicken/Puebla/8623607 1.0000 21 A/duck/Guangxi/951/2005 1.0000 21
110 A/chicken/Egypt/1219s/20 1.0000 21 A/chicken/WestJava/SmiSu 1.0000 21
111 A/chicken/Cambodia/TLC2/ 1.0000 21 A/duck/France/05056a/200 1.0000 21
112 A/Shandong/1/2009 1.0000 21 A/chicken/Vietnam/NCVD40 1.0000 21
113 A/chicken/Queretaro/7653 1.0000 21 A/environment/Bangladesh 1.0000 21
114 A/barn_swallow/Hong_Kong 1.0000 21 A/duck/Primorie/2621/200 1.0000 21
115 A/chicken/BacLieuVietnam 1.0000 21 A_DISC/Cambodia/V0401301 1.0000 21
116 A/bar_headed_goose/Mongo 1.0000 21 A/chicken/Egypt/113Q/201 1.0000 21
117 A/quail/Thanatpin/2283/2 1.0000 21 A/chicken/Egypt/125s/201 1.0000 21
118 A/duck/Hong_Kong/698/197 1.0000 21 A/chicken/Egypt/209573/2 1.0000 21
119 A/chicken/Indonesia/SmiW 1.0000 21 A/turkey/Egypt/091QNLQP/ 1.0000 21
120 A/duck/Egypt/1053/2010 1.0000 21 A/Egypt/2786NAMRU3/2006 1.0000 21
121 A/mallard/Netherlands/3/ 1.0000 21 A/chicken/Bangladesh/11r 1.0000 21
122 A/chicken/Liaoning/23/20 1.0000 21 A/unknown/NY/98996/01|AY 1.0000 21
123 A/tern/South_Africa/1961 1.0000 21 A/chicken/Nepal/T1P/12 1.0000 21
124 A/marabou_stork/Cambodia 1.0000 21 A/chicken/Cambodia/67F1/ 1.0000 21
125 A/gadwall/California/442 1.0000 21 A/chicken/TanseMyanmar/S 1.0000 21
126 A/duck/Cao_Bang/43/2007 1.0000 21 A/chicken/Miyazaki/T10/2 1.0000 21
127 A/whitefaced_whistling_d 1.0000 21 A/muscovy_duck/Vietnam/N 1.0000 21
128 A/Canada_goose/Alaska//4 1.0000 21 A/chicken/Bangladesh/967 1.0000 21
129 A/chicken/Egypt/11VIR445 1.0000 21 A/Hong_Kong/7032/2012 1.0000 21
130 A/chicken/Vietnam/945/20 1.0000 21 A/ostrich/South_Africa/A 1.0000 21
131 A/wild_bird/Wisconsin/43 1.0000 21 A/spurwinged_goose/Niger 1.0000 21
132 A/duck/Vietnam/NCVD1026/ 1.0000 21 A/tern/South_Africa/1959 1.0000 21
133 A/muscovy_duck/Jakarta/S 1.0000 21 A/goose/Germany/R3160/09 1.0000 21
134 A/turkey/Ontario/7732/19 1.0000 21 A/chicken/Egypt/1090/201 1.0000 21
135 A/mallard/Netherlands/2/ 1.0000 21 A/chicken/Vietnam/NCVD18 1.0000 21
136 A/chicken/Texas/1672804/ 1.0000 21 A/duck/Italy/775/2004|CY 1.0000 21
137 A/chicken/Bangladesh/FD( 1.0000 21 A/chicken/Vietnam/NCVD40 1.0000 21
138 A/swan/Hokkaido/67/1996| 1.0000 21 A/chicken/Bangladesh/152 1.0000 21
139 A/chicken/Bangladesh/11r 1.0000 21 A/chicken/Indonesia/Suka 1.0000 21
140 A/gull/Pennsylvania/4175 1.0000 21 A/turkey/England/N28/73| 1.0000 21
141 A/chicken/Badung/BBVD302 1.0000 21 A/chicken/Bangladesh/11r 1.0000 21
142 A/chicken/Yichang/lung1/ 1.0000 21 A/avian/Missouri/4655937 1.0000 21
143 A/turkey/TX/14082/1982_H 1.0000 21 A/Cambodia/W0526301/2012 1.0000 21
144 A/chicken/Vietnam/NCVD11 1.0000 21 A/duck/Egypt/SHZA6605/20 1.0000 21
145 A/chicken/Shandong/A5/20 1.0000 21 A/chicken/VA/40018/1984_ 1.0000 21
146 A/common_magpie/HongKong 1.0000 21 A/shearwater/Australia/7 1.0000 21
147 A/Chicken/TurkeyEdirne/0 1.0000 21 A/goose/Guiyang/337/2006 1.0000 21
148 A/chicken/Egypt/11VIR445 1.0000 21 A/environment/Thailand/I 1.0000 21
149 A/wild_bird_feces/Byeong 1.0000 21 A/duck/Vietnam/NCVD422/2 1.0000 21
150 A/chicken/Bhutan/4/10 1.0000 21 A/turkey/MN/40550/1987_H 1.0000 21
151 A/chicken/Egypt/1085/201 1.0000 21 A/duck/France/06436/2006 1.0000 21
152 A/HongKong/6841/2010 1.0000 21 A/chicken/WestBengal/239 1.0000 21
153 A/duck/Bac_Lieu/1213/200 1.0000 21 A/cinnamon_teal/Californ 1.0000 21
154 A/Muscovy_duck/France/07 1.0000 21 A/chicken/Vietnam/4/2010 1.0000 21
155 A/chicken/Vietnam/NCVD01 1.0000 21 A/chicken/Puebla/1458665 1.0000 21
156 A/Northern_shoveler/Utah 1.0000 21 A/tundra_swan/Alaska//48 1.0000 21
157 A/chicken/Sheny/0606/200 1.0000 21 A/turkey/England/N28/73| 1.0000 21
158 A/duck/Iran/VIR53161/201 1.0000 21 A/chicken/Yangon/1023/20 1.0000 21
159 A/chicken/Vietnam/5/2010 1.0000 21 A/chicken/Hebei/326/2005 1.0000 21
160 A/chicken/Bangladesh/150 1.0000 21 A/wild_bird/Minnesota/46 1.0000 21
161 A/chicken/India/81766/20 1.0000 21
162 ********************************************************************************
164 ********************************************************************************
165 COMMAND LINE SUMMARY
166 ********************************************************************************
167 This information can also be useful in the event you wish to report a
168 problem with the MEME software.
170 command: meme multibasic-uniq.fa -mod zoops -nmotifs 10
172 model: mod= zoops nmotifs= 10 evt= inf
173 object function= E-value of product of p-values
174 width: minw= 8 maxw= 21 minic= 0.00
175 width: wg= 11 ws= 1 endgaps= yes
176 nsites: minsites= 2 maxsites= 253 wnsites= 0.8
177 theta: prob= 1 spmap= pam spfuzz= 120
178 global: substring= yes branching= no wbranch= no
179 em: prior= megap b= 26565 maxiter= 50
180 distance= 1e-05
181 data: n= 5313 N= 253
183 sample: seed= 0 seqfrac= 1
184 Dirichlet mixture priors file: prior30.plib
185 Letter frequencies in dataset:
186 A 0.481 C 0.062 D 0.001 E 0.000 F 0.000 G 0.333 H 0.000 I 0.000 K 0.000
187 L 0.000 M 0.000 N 0.000 P 0.000 Q 0.000 R 0.001 S 0.000 T 0.122 V 0.000
188 W 0.000 Y 0.000
189 Background letter frequencies (from dataset with add-one prior applied):
190 A 0.479 C 0.062 D 0.001 E 0.000 F 0.000 G 0.332 H 0.000 I 0.000 K 0.001
191 L 0.000 M 0.000 N 0.001 P 0.000 Q 0.000 R 0.001 S 0.000 T 0.122 V 0.000
192 W 0.000 Y 0.000
193 ********************************************************************************
196 ********************************************************************************
197 MOTIF 1 width = 21 sites = 47 llr = 971 E-value = 5.0e-239
198 ********************************************************************************
199 --------------------------------------------------------------------------------
200 Motif 1 Description
201 --------------------------------------------------------------------------------
202 Simplified A 928298a29a:a::4::8:::
203 pos.-specific C :::::::8::::::49:1:::
204 probability D :::::::::::::::::::::
205 matrix E :::::::::::::::::::::
206 F :::::::::::::::::::::
207 G :82811::1:a:aa:::1:::
208 H :::::::::::::::::::::
209 I :::::::::::::::::::::
210 K :::::::::::::::::::::
211 L :::::::::::::::::::::
212 M :::::::::::::::::::::
213 N :::::::::::::::::::::
214 P :::::::::::::::::::::
215 Q :::::::::::::::::::::
216 R :::::::::::::::::::::
217 S :::::::::::::::::::::
218 T ::::::::::::::21a:9a9
219 V :::::::::::::::::::::
220 W :::::::::::::::::::::
221 Y :::::::::::::::::::::
223 bits 12.4
224 11.1
225 9.9
226 8.7
227 Relative 7.4
228 Entropy 6.2
229 (29.8 bits) 5.0
230 3.7 *
231 2.5 * ** ***
232 1.2 ** ** ** ******** ***
233 0.0 ---------------------
235 Multilevel AGAGAAACAAGAGGACTATTT
236 consensus A A C
237 sequence
240 --------------------------------------------------------------------------------
242 --------------------------------------------------------------------------------
243 Motif 1 sites sorted by position p-value
244 --------------------------------------------------------------------------------
245 Sequence name Start P-value Site
246 ------------- ----- --------- ---------------------
247 AHAH5_[11734;11734] 1 3.05e-19 . CNAAKWGAARGAGADRDNRKR
248 A/environment/New_York/1 1 7.24e-13 . AGAGAAACAAGAGGCCTATTT
249 A/Northern_shoveler/Utah 1 1.11e-12 . AGAGAAACAAGAGGCCTCTTT
250 A/gadwall/California/442 1 2.10e-12 . AGGGAAACAAGAGGCCTATTT
251 A/wigeon/Ohio/379/1988|C 1 2.82e-12 . AGAGAAACAAGAGGCCTGTTT
252 A/wild_bird/Minnesota/46 1 4.20e-12 . AGAGAAACAAGAGGTCTATTT
253 A/green_winged_teal/Dela 1 5.44e-12 . AGAAAAACAAGAGGCCTATTT
254 A/wood_duck/MD/04623/200 1 9.89e-12 . AGAGAAACAAGAGGACTATTT
255 A/mallard/Washington/454 1 9.89e-12 . AAAGAAACAAGAGGCCTATTT
256 A/tundra_swan/Alaska//48 1 1.29e-11 . AGAGGAACAAGAGGCCTATTT
257 A/duck/Victoria/26/1981| 1 1.29e-11 . AGGGAGACAAGAGGCCTATTT
258 A/cinnamon_teal/Californ 1 1.49e-11 . AAAGAAACAAGAGGCCTCTTT
259 A/turkey/TX/14082/1982_H 1 1.88e-11 . AGAGAAACAAGAGGTCTGTTT
260 A/avian/Missouri/4655937 1 1.88e-11 . AGAGAAACAAGAGGCTTATTT
261 A/unknown/NY/98996/01|AY 1 1.88e-11 . GGAGAAACAAGAGGCCTATTT
262 A/duck/Hong_Kong/698/197 1 2.08e-11 . AGAGAGACAAGAGGTCTATTT
263 A/mallard/Sweden/21/2002 1 2.67e-11 . CGAGAAACAAGAGGACTATTT
264 A/environment/Maryland/1 1 3.01e-11 . AGAGAAACAAGAGGCCCATTT
265 A/chicken/Texas/1672804/ 1 3.63e-11 . AGAGAAAAAAGAGGCCTATTT
266 A/goose/Germany/R3160/09 1 4.14e-11 . AGAGAGACAAGAGGACTATTT
267 A/mallard/Netherlands/2/ 1 5.83e-11 . AGAAAAACAAGAGGACTATTT
268 A/chicken/Ibaraki/17/200 1 5.83e-11 . AGGGAAACAAGAGGCTTATTT
269 A/shearwater/Australia/7 1 6.48e-11 . AGGGAGACAAGAGGTCTATTT
270 A/mallard/Crimea/245/200 1 6.48e-11 . AGAGAAACAAGAGGGCTATTT
271 A/duck/France/080036/200 1 8.17e-11 . AAAGAAACAAGAGGACTATTT
272 A/duck/Italy/775/2004|CY 1 9.22e-11 . AGAGATACAAGAGGACTATTT
273 A/duck/Hokkaido/Vac3/200 1 1.27e-10 . AGAGAAACAAGAGGACTATTC
274 A/parrot/CA/6032/04|DQ25 1 1.65e-10 . AAAGAAACAAGAGGCTTATTT
275 A/chicken/Ibaraki/15/200 1 1.65e-10 . AGAGAAACAAGAGGATTATTT
276 A/swan/Hokkaido/67/1996| 1 2.49e-10 . AGAGAAACAAGAGGACTACTT
277 A/duck/France/090043/200 1 2.89e-10 . AGAGAGACGAGAGGACTATTT
278 A/spurwinged_goose/Niger 1 2.89e-10 . AGAGAAAAAAGAGGACTATTT
279 A/duck/France/05056a/200 1 4.65e-10 . AAAGAAACAAGAGGGCTATTT
280 A/chicken/Texas/2983132/ 1 5.19e-10 . AGGAAAAAAAGAGGCCTATTT
281 A/duck/New_Zealand/41/19 1 6.33e-10 . AGAGACACAAGGGGCCTGTTT
282 A/chicken/Belgium/150VB/ 1 7.84e-10 . AAGGAGACAAGAGGACTATTT
283 A/duck/France/06436/2006 1 8.65e-10 . AAAGAAACAAGAGGACTATTC
284 A/Muscovy_duck/France/07 1 1.05e-09 . AAAGAAGCAAGAGGACTATTT
285 A/gull/Pennsylvania/4175 1 1.05e-09 . AGAGAAACAAAAGGTCTGTTT
286 A/chicken/Scotland/59|X0 1 5.46e-09 . AGGAAGAAAAGAGGTCTATTT
287 A/swan/England/AV3142149 1 5.93e-09 . AGAAAAAAGAGAGGACTATTT
288 A/duck/Hunan/149/2005 1 8.40e-09 . AGAAGAAAAAGAGGACTATTT
289 A/bar_headed_goose/Mongo 1 2.05e-08 . AGAAGAAAAAGAGGACTGTTT
290 A/chick/Pennsylvania/1/1 1 2.05e-08 . AGGAAAAAGAGAGGTCTGTTT
291 A/whooper_swan/Mongolia/ 1 5.15e-08 . ATTGAAACTAGAGGATTATTT
292 A/chicken/VA/40018/1984_ 1 8.00e-08 . AAGAAAAAGAGAGGTCTGTTT
293 A/mallard/Maryland/786/2 1 3.02e-04 . GGAGCAATAGCAGGATTCATA
294 --------------------------------------------------------------------------------
296 --------------------------------------------------------------------------------
297 Motif 1 block diagrams
298 --------------------------------------------------------------------------------
299 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
300 ------------- ---------------- -------------
301 AHAH5_[11734;11734] 3.1e-19 [1]
302 A/environment/New_York/1 7.2e-13 [1]
303 A/Northern_shoveler/Utah 1.1e-12 [1]
304 A/gadwall/California/442 2.1e-12 [1]
305 A/wigeon/Ohio/379/1988|C 2.8e-12 [1]
306 A/wild_bird/Minnesota/46 4.2e-12 [1]
307 A/green_winged_teal/Dela 5.4e-12 [1]
308 A/wood_duck/MD/04623/200 9.9e-12 [1]
309 A/mallard/Washington/454 9.9e-12 [1]
310 A/tundra_swan/Alaska//48 1.3e-11 [1]
311 A/duck/Victoria/26/1981| 1.3e-11 [1]
312 A/cinnamon_teal/Californ 1.5e-11 [1]
313 A/turkey/TX/14082/1982_H 1.9e-11 [1]
314 A/avian/Missouri/4655937 1.9e-11 [1]
315 A/unknown/NY/98996/01|AY 1.9e-11 [1]
316 A/duck/Hong_Kong/698/197 2.1e-11 [1]
317 A/mallard/Sweden/21/2002 2.7e-11 [1]
318 A/environment/Maryland/1 3e-11 [1]
319 A/chicken/Texas/1672804/ 3.6e-11 [1]
320 A/goose/Germany/R3160/09 4.1e-11 [1]
321 A/mallard/Netherlands/2/ 5.8e-11 [1]
322 A/chicken/Ibaraki/17/200 5.8e-11 [1]
323 A/shearwater/Australia/7 6.5e-11 [1]
324 A/mallard/Crimea/245/200 6.5e-11 [1]
325 A/duck/France/080036/200 8.2e-11 [1]
326 A/duck/Italy/775/2004|CY 9.2e-11 [1]
327 A/duck/Hokkaido/Vac3/200 1.3e-10 [1]
328 A/parrot/CA/6032/04|DQ25 1.7e-10 [1]
329 A/chicken/Ibaraki/15/200 1.7e-10 [1]
330 A/swan/Hokkaido/67/1996| 2.5e-10 [1]
331 A/duck/France/090043/200 2.9e-10 [1]
332 A/spurwinged_goose/Niger 2.9e-10 [1]
333 A/duck/France/05056a/200 4.7e-10 [1]
334 A/chicken/Texas/2983132/ 5.2e-10 [1]
335 A/duck/New_Zealand/41/19 6.3e-10 [1]
336 A/chicken/Belgium/150VB/ 7.8e-10 [1]
337 A/duck/France/06436/2006 8.6e-10 [1]
338 A/Muscovy_duck/France/07 1e-09 [1]
339 A/gull/Pennsylvania/4175 1e-09 [1]
340 A/chicken/Scotland/59|X0 5.5e-09 [1]
341 A/swan/England/AV3142149 5.9e-09 [1]
342 A/duck/Hunan/149/2005 8.4e-09 [1]
343 A/bar_headed_goose/Mongo 2e-08 [1]
344 A/chick/Pennsylvania/1/1 2e-08 [1]
345 A/whooper_swan/Mongolia/ 5.1e-08 [1]
346 A/chicken/VA/40018/1984_ 8e-08 [1]
347 A/mallard/Maryland/786/2 0.0003 [1]
348 --------------------------------------------------------------------------------
350 --------------------------------------------------------------------------------
351 Motif 1 in BLOCKS format
352 --------------------------------------------------------------------------------
353 BL MOTIF 1 width=21 seqs=47
354 AHAH5_[11734;11734] ( 1) CNAAKWGAARGAGADRDNRKR 1
355 A/environment/New_York/1 ( 1) AGAGAAACAAGAGGCCTATTT 1
356 A/Northern_shoveler/Utah ( 1) AGAGAAACAAGAGGCCTCTTT 1
357 A/gadwall/California/442 ( 1) AGGGAAACAAGAGGCCTATTT 1
358 A/wigeon/Ohio/379/1988|C ( 1) AGAGAAACAAGAGGCCTGTTT 1
359 A/wild_bird/Minnesota/46 ( 1) AGAGAAACAAGAGGTCTATTT 1
360 A/green_winged_teal/Dela ( 1) AGAAAAACAAGAGGCCTATTT 1
361 A/wood_duck/MD/04623/200 ( 1) AGAGAAACAAGAGGACTATTT 1
362 A/mallard/Washington/454 ( 1) AAAGAAACAAGAGGCCTATTT 1
363 A/tundra_swan/Alaska//48 ( 1) AGAGGAACAAGAGGCCTATTT 1
364 A/duck/Victoria/26/1981| ( 1) AGGGAGACAAGAGGCCTATTT 1
365 A/cinnamon_teal/Californ ( 1) AAAGAAACAAGAGGCCTCTTT 1
366 A/turkey/TX/14082/1982_H ( 1) AGAGAAACAAGAGGTCTGTTT 1
367 A/avian/Missouri/4655937 ( 1) AGAGAAACAAGAGGCTTATTT 1
368 A/unknown/NY/98996/01|AY ( 1) GGAGAAACAAGAGGCCTATTT 1
369 A/duck/Hong_Kong/698/197 ( 1) AGAGAGACAAGAGGTCTATTT 1
370 A/mallard/Sweden/21/2002 ( 1) CGAGAAACAAGAGGACTATTT 1
371 A/environment/Maryland/1 ( 1) AGAGAAACAAGAGGCCCATTT 1
372 A/chicken/Texas/1672804/ ( 1) AGAGAAAAAAGAGGCCTATTT 1
373 A/goose/Germany/R3160/09 ( 1) AGAGAGACAAGAGGACTATTT 1
374 A/mallard/Netherlands/2/ ( 1) AGAAAAACAAGAGGACTATTT 1
375 A/chicken/Ibaraki/17/200 ( 1) AGGGAAACAAGAGGCTTATTT 1
376 A/shearwater/Australia/7 ( 1) AGGGAGACAAGAGGTCTATTT 1
377 A/mallard/Crimea/245/200 ( 1) AGAGAAACAAGAGGGCTATTT 1
378 A/duck/France/080036/200 ( 1) AAAGAAACAAGAGGACTATTT 1
379 A/duck/Italy/775/2004|CY ( 1) AGAGATACAAGAGGACTATTT 1
380 A/duck/Hokkaido/Vac3/200 ( 1) AGAGAAACAAGAGGACTATTC 1
381 A/parrot/CA/6032/04|DQ25 ( 1) AAAGAAACAAGAGGCTTATTT 1
382 A/chicken/Ibaraki/15/200 ( 1) AGAGAAACAAGAGGATTATTT 1
383 A/swan/Hokkaido/67/1996| ( 1) AGAGAAACAAGAGGACTACTT 1
384 A/duck/France/090043/200 ( 1) AGAGAGACGAGAGGACTATTT 1
385 A/spurwinged_goose/Niger ( 1) AGAGAAAAAAGAGGACTATTT 1
386 A/duck/France/05056a/200 ( 1) AAAGAAACAAGAGGGCTATTT 1
387 A/chicken/Texas/2983132/ ( 1) AGGAAAAAAAGAGGCCTATTT 1
388 A/duck/New_Zealand/41/19 ( 1) AGAGACACAAGGGGCCTGTTT 1
389 A/chicken/Belgium/150VB/ ( 1) AAGGAGACAAGAGGACTATTT 1
390 A/duck/France/06436/2006 ( 1) AAAGAAACAAGAGGACTATTC 1
391 A/Muscovy_duck/France/07 ( 1) AAAGAAGCAAGAGGACTATTT 1
392 A/gull/Pennsylvania/4175 ( 1) AGAGAAACAAAAGGTCTGTTT 1
393 A/chicken/Scotland/59|X0 ( 1) AGGAAGAAAAGAGGTCTATTT 1
394 A/swan/England/AV3142149 ( 1) AGAAAAAAGAGAGGACTATTT 1
395 A/duck/Hunan/149/2005 ( 1) AGAAGAAAAAGAGGACTATTT 1
396 A/bar_headed_goose/Mongo ( 1) AGAAGAAAAAGAGGACTGTTT 1
397 A/chick/Pennsylvania/1/1 ( 1) AGGAAAAAGAGAGGTCTGTTT 1
398 A/whooper_swan/Mongolia/ ( 1) ATTGAAACTAGAGGATTATTT 1
399 A/chicken/VA/40018/1984_ ( 1) AAGAAAAAGAGAGGTCTGTTT 1
400 A/mallard/Maryland/786/2 ( 1) GGAGCAATAGCAGGATTCATA 1
401 //
403 --------------------------------------------------------------------------------
405 --------------------------------------------------------------------------------
406 Motif 1 position-specific scoring matrix
407 --------------------------------------------------------------------------------
408 log-odds matrix: alength= 20 w= 21 n= 253 bayes= 3.90811 E= 5.0e-239
409 90 -56 -60 174 142 -291 71 203 -4 259 154 54 235 175 -78 517 -525 377 -128 -25
410 -167 -590 204 358 201 124 239 247 205 279 197 509 293 282 96 508 -273 342 7 107
411 69 -571 -100 118 89 -81 33 138 -66 196 96 34 230 146 -121 493 -238 319 -177 -72
412 -121 -641 -19 153 68 123 59 106 -9 161 58 61 191 129 -94 427 -609 255 -157 -60
413 83 -161 94 349 310 -252 214 386 505 442 329 162 273 302 74 629 -443 554 32 133
414 68 -158 64 317 279 -135 185 354 146 410 298 139 264 276 44 606 -243 522 559 103
415 98 -625 -131 77 52 -292 2 93 -101 157 47 -17 181 98 -159 434 -598 268 -202 -104
416 -115 359 -108 110 85 -668 28 137 -74 191 90 29 229 142 -126 489 -238 315 -182 -76
417 87 -557 -81 145 114 -196 51 169 -36 226 123 44 232 159 -101 504 -238 347 -154 -50
418 96 -547 -53 178 143 -381 73 204 8 262 154 52 223 173 421 508 -536 377 -125 -23
419 -438 -209 245 398 231 148 276 278 248 305 226 301 312 313 137 513 -552 353 47 144
420 101 -633 -136 70 46 -385 -3 85 -108 150 39 -23 176 92 -165 427 -605 260 -206 -109
421 -965 -907 -110 29 -56 159 -32 -75 -117 17 -143 -80 40 -20 -205 127 -901 -11 -235 -158
422 -440 -623 223 375 209 151 254 254 225 283 202 277 289 290 115 487 -578 328 25 122
423 -26 251 481 124 87 -290 39 134 -62 192 93 49 232 149 -120 493 46 315 -180 -72
424 -681 378 -119 89 66 -770 18 119 -55 163 45 -27 152 93 418 377 -1 226 -201 -78
425 -679 -162 475 225 185 -776 161 323 128 289 245 216 224 268 11 592 292 386 -74 30
426 65 1 -57 166 131 -119 67 189 -14 246 142 523 236 172 -86 513 -526 365 -139 -34
427 -422 -164 71 261 227 -711 195 367 169 334 292 251 273 311 415 642 287 437 -36 66
428 -891 -794 -111 53 23 -922 11 119 524 117 38 15 80 88 -142 375 299 178 -207 -111
429 -420 -68 64 254 221 -707 188 359 160 327 284 243 270 304 416 635 284 431 -43 60
430 --------------------------------------------------------------------------------
432 --------------------------------------------------------------------------------
433 Motif 1 position-specific probability matrix
434 --------------------------------------------------------------------------------
435 letter-probability matrix: alength= 20 w= 21 nsites= 47 E= 5.0e-239
436 0.914894 0.042553 0.000000 0.000000 0.000000 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
437 0.191489 0.000000 0.000000 0.000000 0.000000 0.765957 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
438 0.787234 0.000000 0.000000 0.000000 0.000000 0.191489 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
439 0.212766 0.000000 0.000000 0.000000 0.000000 0.787234 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
440 0.893617 0.021277 0.000000 0.000000 0.000000 0.063830 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
441 0.787234 0.021277 0.000000 0.000000 0.000000 0.148936 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.021277 0.000000
442 0.957447 0.000000 0.000000 0.000000 0.000000 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
443 0.212766 0.765957 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
444 0.893617 0.000000 0.000000 0.000000 0.000000 0.085106 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000
445 0.957447 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000
446 0.021277 0.021277 0.000000 0.000000 0.000000 0.957447 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
447 0.978723 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
448 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
449 0.021277 0.000000 0.000000 0.000000 0.000000 0.978723 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
450 0.404255 0.361702 0.021277 0.000000 0.000000 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.170213 0.000000 0.000000 0.000000
451 0.000000 0.851064 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.127660 0.000000 0.000000 0.000000
452 0.000000 0.021277 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.957447 0.000000 0.000000 0.000000
453 0.765957 0.063830 0.000000 0.000000 0.000000 0.148936 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
454 0.021277 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.936170 0.000000 0.000000 0.000000
455 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.978723 0.000000 0.000000 0.000000
456 0.021277 0.042553 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021277 0.000000 0.914894 0.000000 0.000000 0.000000
457 --------------------------------------------------------------------------------
459 --------------------------------------------------------------------------------
460 Motif 1 regular expression
461 --------------------------------------------------------------------------------
462 AGA[GA]AAA[CA]AAGAGG[AC]CTATTT
463 --------------------------------------------------------------------------------
468 Time 54.91 secs.
470 ********************************************************************************
473 ********************************************************************************
474 MOTIF 2 width = 21 sites = 93 llr = 1061 E-value = 4.5e-207
475 ********************************************************************************
476 --------------------------------------------------------------------------------
477 Motif 2 Description
478 --------------------------------------------------------------------------------
479 Simplified A 8:9:a28189:aa19a89a75
480 pos.-specific C ::::::::1::::::::::::
481 probability D :::::::::::::::::::::
482 matrix E :::::::::::::::::::::
483 F :::::::::::::::::::::
484 G 291a:82911a::91:21:35
485 H :::::::::::::::::::::
486 I :::::::::::::::::::::
487 K :::::::::::::::::::::
488 L :::::::::::::::::::::
489 M :::::::::::::::::::::
490 N :::::::::::::::::::::
491 P :::::::::::::::::::::
492 Q :::::::::::::::::::::
493 R :::::::::::::::::::::
494 S :::::::::::::::::::::
495 T :1:::::::::::::::::::
496 V :::::::::::::::::::::
497 W :::::::::::::::::::::
498 Y :::::::::::::::::::::
500 bits 12.4
501 11.1
502 9.9
503 8.7
504 Relative 7.4
505 Entropy 6.2
506 (16.5 bits) 5.0
507 3.7
508 2.5
509 1.2 * *** * ******* *
510 0.0 ---------------------
512 Multilevel AGAGAGAGAAGAAGAAAAAAG
513 consensus G AG GA
514 sequence
517 --------------------------------------------------------------------------------
519 --------------------------------------------------------------------------------
520 Motif 2 sites sorted by position p-value
521 --------------------------------------------------------------------------------
522 Sequence name Start P-value Site
523 ------------- ----- --------- ---------------------
524 A/great_cormorant/Tibet/ 1 3.08e-09 . GGARAGAGAAGAAGAAAAAAG
525 A/chicken/Shan/2626/2007 1 1.84e-08 . AGAGAGAGAAGAAGAAAAAAG
526 A/duck/Vietnam/OIE1287/2 1 3.14e-08 . AGAGAGAGAAGAAGAAAAAGG
527 A/muscovy_duck/Jakarta/S 1 5.58e-08 . AGAGAGAGCAGAAGAAAAAAG
528 A/Vietnam/UT3030/2003 1 5.58e-08 . AGAGAGAGAAGAAGAAAAAAA
529 A/chicken/Magelang/BBVW6 1 7.67e-08 . AGAGAGAGCAGAAGAAAAAGG
530 A/chicken/Vietnam/NCVD19 1 7.67e-08 . AGAGAGAGAAGAAGAAAAAGA
531 A/duck/Bac_Lieu/1213/200 1 9.16e-08 . AGAGAGGGAAGAAGAAAAAAG
532 A/chicken/Sharkia/CAI41/ 1 1.04e-07 . GGAGAGAGAAGAAGAAAAAAG
533 A/chicken/Tabanan/BBVD14 1 2.08e-07 . AGAGAGAGAAGAAGAAAGAAG
534 A/duck/Jiangxi/80/2005 1 2.08e-07 . AGAGAAAGAAGAAGAAAAAAG
535 A/chicken/Badung/BBVD302 1 2.17e-07 . ATAGAGAGAAGAAGAAAAAAG
536 A/chicken/Banten/PdglKas 1 2.53e-07 . AGAGAGAGGAGAAGAAAAAAG
537 A/o.bill_stork/Thailand/ 1 2.53e-07 . AGAGAGAGAAGACGAAAAAAG
538 A/chicken/Bangladesh/150 1 3.10e-07 . GGAGAGAGAAGAAGAAAAAGA
539 A/chicken/Yangon/182/201 1 3.10e-07 . AGAGAGAGAAGAAGAAGAAAA
540 A/chicken/Shandong/A1/20 1 3.10e-07 . AGAGAAAGAAGAAGAAAAAGG
541 A/duck/Qalubia/CAI11/201 1 3.89e-07 . GGAGAGGGAAGAAGAAAAAAG
542 A/Indonesia/UT3006/2005 1 3.89e-07 . AGAGAAAGCAGAAGAAAAAAG
543 A/goose/Fujian/bb/2003 1 3.89e-07 . AGAGAGAGAAGAAGGAAAAAG
544 A/environment/Thailand/I 1 4.76e-07 . AGAGAGAGAGGAAGAAAAAAG
545 A/chicken/EastKalimantan 1 4.76e-07 . AGAGAGAGTAGAAGAAAAAAG
546 A/swine/NorthSumatra/UT6 1 4.76e-07 . AGGGAGAGAAGAAGAAAAAAG
547 A/duck/Cao_Bang/43/2007 1 5.46e-07 . AGAGAAAGAAGAAGAAAAAGA
548 A/muscovy_duck/Vietnam/N 1 6.23e-07 . AGAGAAGGAAGAAGAAAAAAG
549 A/Indonesia/NIHRD12379/2 1 6.23e-07 . AGAGAGAGCAGAAGGAAAAAG
550 A/Egypt/321NAMRU3/2007 1 6.23e-07 . GGAGAGAGAAGAAGAAGAAAG
551 A/chicken/India/81766/20 1 7.12e-07 . GGAGAGAGAAGAAGAAAGAAG
552 A/chicken/Bangladesh/967 1 7.12e-07 . GGAGAAAGAAGAAGAAAAAAG
553 A/chicken/Nepal/T1P/12 1 7.12e-07 . AGAGAGAGGAGAAGAAAAAGA
554 A/Thailand/WRAIR1720H/20 1 7.12e-07 . AGAGAGAAAAGAAGAAAAAAG
555 A/goose/Guiyang/337/2006 1 7.95e-07 . AGAGAGAGAAGGAGAAAAAAG
556 A/Muscovy_duck/Ca_Mau/11 1 7.95e-07 . AGAGAGGGGAGAAGAAAAAAG
557 A/owstons_civet/VietNam/ 1 8.77e-07 . AGAGAGAGAAGAAGGAAAAGA
558 A/chicken/Bangladesh/152 1 1.20e-06 . AGGGAGAGAAGAAGAAAAAGA
559 A/chicken/Liaoning/23/20 1 1.20e-06 . GGAGAGAGAAGAAGGAAAAAG
560 A/condor/Guangdong/139/2 1 1.20e-06 . AGAGGGAGAAGAAGAAAAAAG
561 A/muscovy_duck/Vietnam/L 1 1.20e-06 . ATAGAGAGAAGAAGAAGAAAG
562 A/chicken/Hebei/326/2005 1 1.32e-06 . AGAGAGGGAGGAAGAAAAAAG
563 A/chicken/Inhu/BPPVRII/2 1 1.32e-06 . AGGGAGGGAAGAAGAAAAAAG
564 A/chicken/WestBengal/239 1 1.45e-06 . GGAGAGAGGAGAAGAAAAAAA
565 A/bird/Turkey/Unye_ist06 1 1.45e-06 . GGGGAGAGAAGAAGAAAAAAG
566 A/chicken/Sheny/0606/200 1 1.67e-06 . AGAGAGGGAAGAAGGAAAAAA
567 A/chicken/Miyazaki/T10/2 1 1.67e-06 . AGAGAGAAAAGAAGAAAAAGA
568 A/duck/Guangxi/668/2004 1 1.67e-06 . AGAGAGATAAGAAGAAAAAAG
569 A/Cambodia/W0526301/2012 1 1.92e-06 . AGAGAGGAAAGAAGAAAAAAG
570 A/chicken/Egypt/11VIR445 1 1.92e-06 . GGAGAGGGAAGAAGAAAGAAG
571 A/chicken/Egypt/113Q/201 1 1.92e-06 . GGAGAAGGAAGAAGAAAAAAG
572 A/Hubei/1/2010 1 1.92e-06 . AGAGAGAGAAGGAGAAAAAGA
573 A/duck/Vietnam/NCVD1463/ 1 1.92e-06 . ATAGAGAGAAGAAGAAGAAAA
574 A/chicken/Shandong/A10/2 1 1.92e-06 . AGAGGGAGAAGAAGAAAAAAA
575 A/chicken/Cambodia/67F1/ 1 2.10e-06 . AGAGAGGGAAGGAGAAAAAAG
576 A/chicken/Liaoning/A1/20 1 2.10e-06 . AGAGAGGGAGGAAGAAAAAAA
577 A/chicken/Egypt/1158SF/2 1 2.10e-06 . GGAGAGAAAAGAAGAAAAAAG
578 A/Shandong/1/2009 1 2.34e-06 . AGAGAAAGAAGAAGAAGAAGA
579 A/chicken/Egypt/1085/201 1 2.60e-06 . GGAGAGGGAAGAAGAAGAAAA
580 A/chicken/Hebei/A8/2009 1 2.60e-06 . AGAGGGAGAAGAAGAAAAAGA
581 A/chicken/CentralJava/UT 1 2.60e-06 . AGAGAGAGAAGAAAAAAAAGA
582 A_DISC/Cambodia/V0401301 1 2.91e-06 . AGAGTGGGAAGAAGAAAAAAG
583 A/chicken/Lampung/BPPVRI 1 2.91e-06 . AGAGAAAGCAGAAGGAAAAAG
584 A/chicken/Vietnam/NCVD40 1 3.27e-06 . AGAGAAAGGAGAAGAAAAAGA
585 A/duck/Vietnam/NCVD366/2 1 3.27e-06 . AGAGATGGAAGAAGAAAAAAG
586 A/duck/Yunnan/47/2006 1 3.27e-06 . AGAAAGAGAAGAAGAAAAAAG
587 A/chicken/Denpasar/BBVD1 1 3.61e-06 . AGAGAGAGAAGAAGAGAAAAG
588 A/Hunan/1/2009 1 3.93e-06 . AGAGAAAGAAGAAGGAAAAGA
589 A/chicken/Vietnam/NCVD09 1 4.40e-06 . ATAGAGGGAAGAAGAAGAAAA
590 A/duck/Guangxi/951/2005 1 5.43e-06 . AGTGAAAGAAGAAGAAAAAGA
591 A/environment/Bangladesh 1 5.95e-06 . AGGGAGAGGAGAAGAAAAAGA
592 A/environment/ChangSha/2 1 5.95e-06 . AGAGAGAGAAGAGGAAAAAGA
593 A/chicken/India/241272/2 1 5.95e-06 . GGAGAGAGGAGAAGAAAGAAA
594 A/quail/Thanatpin/2283/2 1 6.62e-06 . AGAGAAAAAAGAAGAAAAAGA
595 A/chicken/Sikkim/151466/ 1 6.62e-06 . GGTGAGAGAAGAAGAAAGAAG
596 A/chicken/Bangladesh/830 1 6.62e-06 . GGAGAGAGAAGAAAAAAAAGA
597 A/chicken/Shandong/A5/20 1 7.33e-06 . AGAGAGGGAGGAAGAAGAAAA
598 A/domestic_goose/Hong_Ko 1 8.76e-06 . ATAGAGAGGAGAAGAAGAAAA
599 A/chicken/Egypt/10512AG/ 1 9.60e-06 . GAAGAGGGAAGAAGAAAAAAG
600 A/duck/Guangxi/13/2004 1 9.60e-06 . AGAGAAAGAAGAAAAAAAAGA
601 A/Vietnam/UT30259/2004 1 9.60e-06 . AGAGAGAGAAGAAAAAAGAGA
602 A/spurwinged_goose/Niger 1 1.16e-05 . AGAGAAAAAAGAAGAAAGAAG
603 A/chicken/Vietnam/NCVD18 1 1.27e-05 . AAAGAAAGAAGAAGAAAAAGA
604 A/duck/Vietnam/NCVD1026/ 1 1.27e-05 . ATAGAGAGAGGAAGAAGAAAA
605 A/chicken/WestJava/SmiAc 1 1.27e-05 . AGAGAGAGCAGACGTAAAAAA
606 A/Vietnam/HN36250/2010 1 1.51e-05 . AGAGAAAAAAGAAGAAGAAAA
607 A/chicken/Vietnam/NCVD40 1 1.66e-05 . AGAGAAAGGAGAAGGAAAAGA
608 A/duck/Vietnam/NCVD422/2 1 1.96e-05 . AGGGAAAGGAGAAGAAAAAGA
609 A/barn_swallow/Hong_Kong 1 2.31e-05 . ATAGAAAGAAGAAGAAGGAAA
610 A/ck/Indonesia/072/10 1 2.31e-05 . AAGGAGGGAAGAAGAAAAAAG
611 A/chicken/Yangon/1023/20 1 2.51e-05 . AGAGAGAAAGGAAGAAGAAAA
612 A/chicken/Vietnam/NCVD01 1 2.94e-05 . AGAGAGGGAGGAAGAAGGAGA
613 A/Egypt/4822NAMRU3/2009 1 4.03e-05 . GGAAAGAGTAGAAGAAAAAAG
614 A/chicken/Korea/ES/03 1 5.89e-05 . AGAGAGAAAAGAAAAAAGAGA
615 A/duck/Viet_Nam/TG2401/2 1 6.33e-05 . AGAGAGAGAAGGAAAAAGAGA
616 A/whitefaced_whistling_d 1 1.11e-04 . AAAGAAAAAAGAAGAAAGAAG
617 --------------------------------------------------------------------------------
619 --------------------------------------------------------------------------------
620 Motif 2 block diagrams
621 --------------------------------------------------------------------------------
622 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
623 ------------- ---------------- -------------
624 A/great_cormorant/Tibet/ 3.1e-09 [2]
625 A/chicken/Shan/2626/2007 1.8e-08 [2]
626 A/duck/Vietnam/OIE1287/2 3.1e-08 [2]
627 A/muscovy_duck/Jakarta/S 5.6e-08 [2]
628 A/Vietnam/UT3030/2003 5.6e-08 [2]
629 A/chicken/Magelang/BBVW6 7.7e-08 [2]
630 A/chicken/Vietnam/NCVD19 7.7e-08 [2]
631 A/duck/Bac_Lieu/1213/200 9.2e-08 [2]
632 A/chicken/Sharkia/CAI41/ 1e-07 [2]
633 A/chicken/Tabanan/BBVD14 2.1e-07 [2]
634 A/duck/Jiangxi/80/2005 2.1e-07 [2]
635 A/chicken/Badung/BBVD302 2.2e-07 [2]
636 A/chicken/Banten/PdglKas 2.5e-07 [2]
637 A/o.bill_stork/Thailand/ 2.5e-07 [2]
638 A/chicken/Bangladesh/150 3.1e-07 [2]
639 A/chicken/Yangon/182/201 3.1e-07 [2]
640 A/chicken/Shandong/A1/20 3.1e-07 [2]
641 A/duck/Qalubia/CAI11/201 3.9e-07 [2]
642 A/Indonesia/UT3006/2005 3.9e-07 [2]
643 A/goose/Fujian/bb/2003 3.9e-07 [2]
644 A/environment/Thailand/I 4.8e-07 [2]
645 A/chicken/EastKalimantan 4.8e-07 [2]
646 A/swine/NorthSumatra/UT6 4.8e-07 [2]
647 A/duck/Cao_Bang/43/2007 5.5e-07 [2]
648 A/muscovy_duck/Vietnam/N 6.2e-07 [2]
649 A/Indonesia/NIHRD12379/2 6.2e-07 [2]
650 A/Egypt/321NAMRU3/2007 6.2e-07 [2]
651 A/chicken/India/81766/20 7.1e-07 [2]
652 A/chicken/Bangladesh/967 7.1e-07 [2]
653 A/chicken/Nepal/T1P/12 7.1e-07 [2]
654 A/Thailand/WRAIR1720H/20 7.1e-07 [2]
655 A/goose/Guiyang/337/2006 7.9e-07 [2]
656 A/Muscovy_duck/Ca_Mau/11 7.9e-07 [2]
657 A/owstons_civet/VietNam/ 8.8e-07 [2]
658 A/chicken/Bangladesh/152 1.2e-06 [2]
659 A/chicken/Liaoning/23/20 1.2e-06 [2]
660 A/condor/Guangdong/139/2 1.2e-06 [2]
661 A/muscovy_duck/Vietnam/L 1.2e-06 [2]
662 A/chicken/Hebei/326/2005 1.3e-06 [2]
663 A/chicken/Inhu/BPPVRII/2 1.3e-06 [2]
664 A/chicken/WestBengal/239 1.5e-06 [2]
665 A/bird/Turkey/Unye_ist06 1.5e-06 [2]
666 A/chicken/Sheny/0606/200 1.7e-06 [2]
667 A/chicken/Miyazaki/T10/2 1.7e-06 [2]
668 A/duck/Guangxi/668/2004 1.7e-06 [2]
669 A/Cambodia/W0526301/2012 1.9e-06 [2]
670 A/chicken/Egypt/11VIR445 1.9e-06 [2]
671 A/chicken/Egypt/113Q/201 1.9e-06 [2]
672 A/Hubei/1/2010 1.9e-06 [2]
673 A/duck/Vietnam/NCVD1463/ 1.9e-06 [2]
674 A/chicken/Shandong/A10/2 1.9e-06 [2]
675 A/chicken/Cambodia/67F1/ 2.1e-06 [2]
676 A/chicken/Liaoning/A1/20 2.1e-06 [2]
677 A/chicken/Egypt/1158SF/2 2.1e-06 [2]
678 A/Shandong/1/2009 2.3e-06 [2]
679 A/chicken/Egypt/1085/201 2.6e-06 [2]
680 A/chicken/Hebei/A8/2009 2.6e-06 [2]
681 A/chicken/CentralJava/UT 2.6e-06 [2]
682 A_DISC/Cambodia/V0401301 2.9e-06 [2]
683 A/chicken/Lampung/BPPVRI 2.9e-06 [2]
684 A/chicken/Vietnam/NCVD40 3.3e-06 [2]
685 A/duck/Vietnam/NCVD366/2 3.3e-06 [2]
686 A/duck/Yunnan/47/2006 3.3e-06 [2]
687 A/chicken/Denpasar/BBVD1 3.6e-06 [2]
688 A/Hunan/1/2009 3.9e-06 [2]
689 A/chicken/Vietnam/NCVD09 4.4e-06 [2]
690 A/duck/Guangxi/951/2005 5.4e-06 [2]
691 A/environment/Bangladesh 6e-06 [2]
692 A/environment/ChangSha/2 6e-06 [2]
693 A/chicken/India/241272/2 6e-06 [2]
694 A/quail/Thanatpin/2283/2 6.6e-06 [2]
695 A/chicken/Sikkim/151466/ 6.6e-06 [2]
696 A/chicken/Bangladesh/830 6.6e-06 [2]
697 A/chicken/Shandong/A5/20 7.3e-06 [2]
698 A/domestic_goose/Hong_Ko 8.8e-06 [2]
699 A/chicken/Egypt/10512AG/ 9.6e-06 [2]
700 A/duck/Guangxi/13/2004 9.6e-06 [2]
701 A/Vietnam/UT30259/2004 9.6e-06 [2]
702 A/spurwinged_goose/Niger 1.2e-05 [2]
703 A/chicken/Vietnam/NCVD18 1.3e-05 [2]
704 A/duck/Vietnam/NCVD1026/ 1.3e-05 [2]
705 A/chicken/WestJava/SmiAc 1.3e-05 [2]
706 A/Vietnam/HN36250/2010 1.5e-05 [2]
707 A/chicken/Vietnam/NCVD40 1.7e-05 [2]
708 A/duck/Vietnam/NCVD422/2 2e-05 [2]
709 A/barn_swallow/Hong_Kong 2.3e-05 [2]
710 A/ck/Indonesia/072/10 2.3e-05 [2]
711 A/chicken/Yangon/1023/20 2.5e-05 [2]
712 A/chicken/Vietnam/NCVD01 2.9e-05 [2]
713 A/Egypt/4822NAMRU3/2009 4e-05 [2]
714 A/chicken/Korea/ES/03 5.9e-05 [2]
715 A/duck/Viet_Nam/TG2401/2 6.3e-05 [2]
716 A/whitefaced_whistling_d 0.00011 [2]
717 --------------------------------------------------------------------------------
719 --------------------------------------------------------------------------------
720 Motif 2 in BLOCKS format
721 --------------------------------------------------------------------------------
722 BL MOTIF 2 width=21 seqs=93
723 A/great_cormorant/Tibet/ ( 1) GGARAGAGAAGAAGAAAAAAG 1
724 A/chicken/Shan/2626/2007 ( 1) AGAGAGAGAAGAAGAAAAAAG 1
725 A/duck/Vietnam/OIE1287/2 ( 1) AGAGAGAGAAGAAGAAAAAGG 1
726 A/muscovy_duck/Jakarta/S ( 1) AGAGAGAGCAGAAGAAAAAAG 1
727 A/Vietnam/UT3030/2003 ( 1) AGAGAGAGAAGAAGAAAAAAA 1
728 A/chicken/Magelang/BBVW6 ( 1) AGAGAGAGCAGAAGAAAAAGG 1
729 A/chicken/Vietnam/NCVD19 ( 1) AGAGAGAGAAGAAGAAAAAGA 1
730 A/duck/Bac_Lieu/1213/200 ( 1) AGAGAGGGAAGAAGAAAAAAG 1
731 A/chicken/Sharkia/CAI41/ ( 1) GGAGAGAGAAGAAGAAAAAAG 1
732 A/chicken/Tabanan/BBVD14 ( 1) AGAGAGAGAAGAAGAAAGAAG 1
733 A/duck/Jiangxi/80/2005 ( 1) AGAGAAAGAAGAAGAAAAAAG 1
734 A/chicken/Badung/BBVD302 ( 1) ATAGAGAGAAGAAGAAAAAAG 1
735 A/chicken/Banten/PdglKas ( 1) AGAGAGAGGAGAAGAAAAAAG 1
736 A/o.bill_stork/Thailand/ ( 1) AGAGAGAGAAGACGAAAAAAG 1
737 A/chicken/Bangladesh/150 ( 1) GGAGAGAGAAGAAGAAAAAGA 1
738 A/chicken/Yangon/182/201 ( 1) AGAGAGAGAAGAAGAAGAAAA 1
739 A/chicken/Shandong/A1/20 ( 1) AGAGAAAGAAGAAGAAAAAGG 1
740 A/duck/Qalubia/CAI11/201 ( 1) GGAGAGGGAAGAAGAAAAAAG 1
741 A/Indonesia/UT3006/2005 ( 1) AGAGAAAGCAGAAGAAAAAAG 1
742 A/goose/Fujian/bb/2003 ( 1) AGAGAGAGAAGAAGGAAAAAG 1
743 A/environment/Thailand/I ( 1) AGAGAGAGAGGAAGAAAAAAG 1
744 A/chicken/EastKalimantan ( 1) AGAGAGAGTAGAAGAAAAAAG 1
745 A/swine/NorthSumatra/UT6 ( 1) AGGGAGAGAAGAAGAAAAAAG 1
746 A/duck/Cao_Bang/43/2007 ( 1) AGAGAAAGAAGAAGAAAAAGA 1
747 A/muscovy_duck/Vietnam/N ( 1) AGAGAAGGAAGAAGAAAAAAG 1
748 A/Indonesia/NIHRD12379/2 ( 1) AGAGAGAGCAGAAGGAAAAAG 1
749 A/Egypt/321NAMRU3/2007 ( 1) GGAGAGAGAAGAAGAAGAAAG 1
750 A/chicken/India/81766/20 ( 1) GGAGAGAGAAGAAGAAAGAAG 1
751 A/chicken/Bangladesh/967 ( 1) GGAGAAAGAAGAAGAAAAAAG 1
752 A/chicken/Nepal/T1P/12 ( 1) AGAGAGAGGAGAAGAAAAAGA 1
753 A/Thailand/WRAIR1720H/20 ( 1) AGAGAGAAAAGAAGAAAAAAG 1
754 A/goose/Guiyang/337/2006 ( 1) AGAGAGAGAAGGAGAAAAAAG 1
755 A/Muscovy_duck/Ca_Mau/11 ( 1) AGAGAGGGGAGAAGAAAAAAG 1
756 A/owstons_civet/VietNam/ ( 1) AGAGAGAGAAGAAGGAAAAGA 1
757 A/chicken/Bangladesh/152 ( 1) AGGGAGAGAAGAAGAAAAAGA 1
758 A/chicken/Liaoning/23/20 ( 1) GGAGAGAGAAGAAGGAAAAAG 1
759 A/condor/Guangdong/139/2 ( 1) AGAGGGAGAAGAAGAAAAAAG 1
760 A/muscovy_duck/Vietnam/L ( 1) ATAGAGAGAAGAAGAAGAAAG 1
761 A/chicken/Hebei/326/2005 ( 1) AGAGAGGGAGGAAGAAAAAAG 1
762 A/chicken/Inhu/BPPVRII/2 ( 1) AGGGAGGGAAGAAGAAAAAAG 1
763 A/chicken/WestBengal/239 ( 1) GGAGAGAGGAGAAGAAAAAAA 1
764 A/bird/Turkey/Unye_ist06 ( 1) GGGGAGAGAAGAAGAAAAAAG 1
765 A/chicken/Sheny/0606/200 ( 1) AGAGAGGGAAGAAGGAAAAAA 1
766 A/chicken/Miyazaki/T10/2 ( 1) AGAGAGAAAAGAAGAAAAAGA 1
767 A/duck/Guangxi/668/2004 ( 1) AGAGAGATAAGAAGAAAAAAG 1
768 A/Cambodia/W0526301/2012 ( 1) AGAGAGGAAAGAAGAAAAAAG 1
769 A/chicken/Egypt/11VIR445 ( 1) GGAGAGGGAAGAAGAAAGAAG 1
770 A/chicken/Egypt/113Q/201 ( 1) GGAGAAGGAAGAAGAAAAAAG 1
771 A/Hubei/1/2010 ( 1) AGAGAGAGAAGGAGAAAAAGA 1
772 A/duck/Vietnam/NCVD1463/ ( 1) ATAGAGAGAAGAAGAAGAAAA 1
773 A/chicken/Shandong/A10/2 ( 1) AGAGGGAGAAGAAGAAAAAAA 1
774 A/chicken/Cambodia/67F1/ ( 1) AGAGAGGGAAGGAGAAAAAAG 1
775 A/chicken/Liaoning/A1/20 ( 1) AGAGAGGGAGGAAGAAAAAAA 1
776 A/chicken/Egypt/1158SF/2 ( 1) GGAGAGAAAAGAAGAAAAAAG 1
777 A/Shandong/1/2009 ( 1) AGAGAAAGAAGAAGAAGAAGA 1
778 A/chicken/Egypt/1085/201 ( 1) GGAGAGGGAAGAAGAAGAAAA 1
779 A/chicken/Hebei/A8/2009 ( 1) AGAGGGAGAAGAAGAAAAAGA 1
780 A/chicken/CentralJava/UT ( 1) AGAGAGAGAAGAAAAAAAAGA 1
781 A_DISC/Cambodia/V0401301 ( 1) AGAGTGGGAAGAAGAAAAAAG 1
782 A/chicken/Lampung/BPPVRI ( 1) AGAGAAAGCAGAAGGAAAAAG 1
783 A/chicken/Vietnam/NCVD40 ( 1) AGAGAAAGGAGAAGAAAAAGA 1
784 A/duck/Vietnam/NCVD366/2 ( 1) AGAGATGGAAGAAGAAAAAAG 1
785 A/duck/Yunnan/47/2006 ( 1) AGAAAGAGAAGAAGAAAAAAG 1
786 A/chicken/Denpasar/BBVD1 ( 1) AGAGAGAGAAGAAGAGAAAAG 1
787 A/Hunan/1/2009 ( 1) AGAGAAAGAAGAAGGAAAAGA 1
788 A/chicken/Vietnam/NCVD09 ( 1) ATAGAGGGAAGAAGAAGAAAA 1
789 A/duck/Guangxi/951/2005 ( 1) AGTGAAAGAAGAAGAAAAAGA 1
790 A/environment/Bangladesh ( 1) AGGGAGAGGAGAAGAAAAAGA 1
791 A/environment/ChangSha/2 ( 1) AGAGAGAGAAGAGGAAAAAGA 1
792 A/chicken/India/241272/2 ( 1) GGAGAGAGGAGAAGAAAGAAA 1
793 A/quail/Thanatpin/2283/2 ( 1) AGAGAAAAAAGAAGAAAAAGA 1
794 A/chicken/Sikkim/151466/ ( 1) GGTGAGAGAAGAAGAAAGAAG 1
795 A/chicken/Bangladesh/830 ( 1) GGAGAGAGAAGAAAAAAAAGA 1
796 A/chicken/Shandong/A5/20 ( 1) AGAGAGGGAGGAAGAAGAAAA 1
797 A/domestic_goose/Hong_Ko ( 1) ATAGAGAGGAGAAGAAGAAAA 1
798 A/chicken/Egypt/10512AG/ ( 1) GAAGAGGGAAGAAGAAAAAAG 1
799 A/duck/Guangxi/13/2004 ( 1) AGAGAAAGAAGAAAAAAAAGA 1
800 A/Vietnam/UT30259/2004 ( 1) AGAGAGAGAAGAAAAAAGAGA 1
801 A/spurwinged_goose/Niger ( 1) AGAGAAAAAAGAAGAAAGAAG 1
802 A/chicken/Vietnam/NCVD18 ( 1) AAAGAAAGAAGAAGAAAAAGA 1
803 A/duck/Vietnam/NCVD1026/ ( 1) ATAGAGAGAGGAAGAAGAAAA 1
804 A/chicken/WestJava/SmiAc ( 1) AGAGAGAGCAGACGTAAAAAA 1
805 A/Vietnam/HN36250/2010 ( 1) AGAGAAAAAAGAAGAAGAAAA 1
806 A/chicken/Vietnam/NCVD40 ( 1) AGAGAAAGGAGAAGGAAAAGA 1
807 A/duck/Vietnam/NCVD422/2 ( 1) AGGGAAAGGAGAAGAAAAAGA 1
808 A/barn_swallow/Hong_Kong ( 1) ATAGAAAGAAGAAGAAGGAAA 1
809 A/ck/Indonesia/072/10 ( 1) AAGGAGGGAAGAAGAAAAAAG 1
810 A/chicken/Yangon/1023/20 ( 1) AGAGAGAAAGGAAGAAGAAAA 1
811 A/chicken/Vietnam/NCVD01 ( 1) AGAGAGGGAGGAAGAAGGAGA 1
812 A/Egypt/4822NAMRU3/2009 ( 1) GGAAAGAGTAGAAGAAAAAAG 1
813 A/chicken/Korea/ES/03 ( 1) AGAGAGAAAAGAAAAAAGAGA 1
814 A/duck/Viet_Nam/TG2401/2 ( 1) AGAGAGAGAAGGAAAAAGAGA 1
815 A/whitefaced_whistling_d ( 1) AAAGAAAAAAGAAGAAAGAAG 1
816 //
818 --------------------------------------------------------------------------------
820 --------------------------------------------------------------------------------
821 Motif 2 position-specific scoring matrix
822 --------------------------------------------------------------------------------
823 log-odds matrix: alength= 20 w= 21 n= 253 bayes= -2.7879 E= 4.5e-207
824 72 -749 -249 -50 -72 -70 -114 -39 -227 29 -84 -137 67 -22 -279 310 -719 136 -318 -223
825 -344 -673 49 210 76 140 95 123 55 161 75 116 181 151 -46 411 -81 242 -130 -31
826 90 -670 -203 16 -12 -213 -67 36 -169 94 -6 -67 132 46 -221 393 -243 218 -277 -173
827 -444 -670 187 339 169 151 216 216 189 242 164 241 247 252 316 445 -623 286 -13 84
828 98 -671 -204 15 -12 -331 -68 36 -169 94 -6 -68 131 45 -222 392 -334 217 -277 -173
829 -108 -673 -166 37 -7 119 -51 40 -141 96 -2 -46 134 53 -203 392 -335 216 -264 -160
830 70 -749 -249 -50 -72 -63 -114 -39 -227 29 -84 -137 67 -22 -279 310 -719 136 -318 -223
831 -223 -672 58 219 82 140 103 129 64 166 80 124 185 157 -38 413 -345 245 -123 -24
832 74 5 -200 21 -6 -163 -64 43 -164 100 0 -63 136 50 -216 398 -243 224 -273 -168
833 94 -754 -252 -54 -75 -213 -117 -43 -231 25 -89 -142 63 -26 -282 305 -724 131 -320 -226
834 -1220 -1064 -309 -185 -204 159 -192 -270 -327 -131 -355 -312 -101 -197 -390 -105 -1086 -214 -381 -314
835 99 -759 -254 -57 -78 -293 -119 -48 -233 22 -93 -146 60 -30 -285 300 -729 126 -322 -228
836 100 -150 -207 12 -15 -476 -70 33 -172 91 -10 -72 128 42 -224 388 -643 213 -279 -175
837 -294 -754 33 188 41 148 74 81 36 119 29 90 133 115 -69 337 -716 174 -150 -55
838 90 -671 -204 15 -12 -194 -68 35 -170 93 -7 -67 132 45 -222 393 -334 217 -278 -173
839 104 -775 -262 -69 -89 -485 -127 -62 -244 10 -109 -160 48 -43 -296 283 -746 109 -329 -237
840 82 -750 -250 -51 -72 -114 -115 -40 -228 28 -85 -138 67 -23 -280 309 -720 135 -318 -224
841 85 -751 -250 -51 -73 -136 -115 -41 -228 27 -86 -139 66 -23 -280 309 -721 134 -319 -224
842 106 -975 -324 -187 -188 -1037 -192 -227 -336 -107 -299 -307 -74 -175 -389 40 -969 -109 -380 -309
843 52 -750 -249 -50 -72 -10 -115 -40 -228 28 -85 -138 67 -22 -279 310 -719 135 -318 -223
844 -6 -756 -252 -55 -77 69 -118 -45 -232 23 -91 -143 62 -28 -284 303 -726 129 -321 -227
845 --------------------------------------------------------------------------------
847 --------------------------------------------------------------------------------
848 Motif 2 position-specific probability matrix
849 --------------------------------------------------------------------------------
850 letter-probability matrix: alength= 20 w= 21 nsites= 93 E= 4.5e-207
851 0.795699 0.000000 0.000000 0.000000 0.000000 0.204301 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
852 0.043011 0.000000 0.000000 0.000000 0.000000 0.881720 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.075269 0.000000 0.000000 0.000000
853 0.903226 0.000000 0.000000 0.000000 0.000000 0.075269 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021505 0.000000 0.000000 0.000000
854 0.021505 0.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000 0.000000 0.000000
855 0.956989 0.000000 0.000000 0.000000 0.000000 0.032258 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
856 0.225806 0.000000 0.000000 0.000000 0.000000 0.763441 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
857 0.784946 0.000000 0.000000 0.000000 0.000000 0.215054 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
858 0.107527 0.000000 0.000000 0.000000 0.000000 0.881720 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
859 0.806452 0.064516 0.000000 0.000000 0.000000 0.107527 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.021505 0.000000 0.000000 0.000000
860 0.924731 0.000000 0.000000 0.000000 0.000000 0.075269 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
861 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
862 0.956989 0.000000 0.000000 0.000000 0.000000 0.043011 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
863 0.967742 0.021505 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
864 0.064516 0.000000 0.000000 0.000000 0.000000 0.935484 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
865 0.903226 0.000000 0.000000 0.000000 0.000000 0.086022 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000
866 0.989247 0.000000 0.000000 0.000000 0.000000 0.010753 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
867 0.849462 0.000000 0.000000 0.000000 0.000000 0.150538 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
868 0.870968 0.000000 0.000000 0.000000 0.000000 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
869 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
870 0.688172 0.000000 0.000000 0.000000 0.000000 0.311828 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
871 0.462366 0.000000 0.000000 0.000000 0.000000 0.537634 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
872 --------------------------------------------------------------------------------
874 --------------------------------------------------------------------------------
875 Motif 2 regular expression
876 --------------------------------------------------------------------------------
877 [AG]GAGA[GA][AG]GAAGAAGAAAAA[AG][GA]
878 --------------------------------------------------------------------------------
883 Time 56.02 secs.
885 ********************************************************************************
888 ********************************************************************************
889 MOTIF 3 width = 15 sites = 25 llr = 475 E-value = 2.5e-074
890 ********************************************************************************
891 --------------------------------------------------------------------------------
892 Motif 3 Description
893 --------------------------------------------------------------------------------
894 Simplified A ::9:3::24::17:a
895 pos.-specific C 8:::::3:::9::1:
896 probability D :::::::::::::::
897 matrix E :::::::::::::::
898 F :::::::::::::::
899 G ::1::3786a:::::
900 H :::::::::::::::
901 I :::::::::::::::
902 K :::::::::::::::
903 L :::::::::::::::
904 M :::::::::::::::
905 N :::::::::::::::
906 P :::::::::::::::
907 Q :::::::::::::::
908 R :::::::::::::::
909 S :::::::::::::::
910 T 2a:a77::::1939:
911 V :::::::::::::::
912 W :::::::::::::::
913 Y :::::::::::::::
915 bits 12.4
916 11.1
917 9.9
918 8.7
919 Relative 7.4
920 Entropy 6.2
921 (27.4 bits) 5.0
922 3.7 * *
923 2.5 ** * ** *
924 1.2 ******** ******
925 0.0 ---------------
927 Multilevel CTATTTGGGGCTATA
928 consensus AGCAA T
929 sequence
932 --------------------------------------------------------------------------------
934 --------------------------------------------------------------------------------
935 Motif 3 sites sorted by position p-value
936 --------------------------------------------------------------------------------
937 Sequence name Start P-value Site
938 ------------- ----- --------- ---------------
939 A/chicken/Bangladesh/FD( 1 4.15e-11 . CTATTTGGGGCTATA GCAGGT
940 A/tern/South_Africa/1959 4 4.15e-11 GGT CTATTTGGGGCTATA GCA
941 A/mallard/Netherlands/3/ 4 4.15e-11 GGA CTATTTGGGGCTATA GCA
942 A/duck/Primorie/2633/200 1 4.15e-11 . CTATTTGGGGCTATA GCAGGC
943 A/wild_bird_feces/Cheons 7 4.15e-11 AGAGGA CTATTTGGGGCTATA
944 A/chicken/Bangladesh/11r 1 8.33e-11 . CTATTTGGAGCTATA GCAGGT
945 A/turkey/Egypt/091QNLQP/ 1 8.33e-11 . CTATTTGGAGCTATA GCAGGG
946 A/duck/Hong_Kong/312/197 1 8.33e-11 . CTATTTGGAGCTATA GCAGGC
947 A/chicken/Bangladesh/11r 4 8.33e-11 GGA CTATTTGGAGCTATA GCA
948 A/chicken/Turkey/Misinli 7 8.33e-11 AGAGGA CTATTTGGAGCTATA
949 A/wild_bird_feces/Byeong 4 6.63e-10 GGA CTATTTGGGGCCATA GCA
950 A/ostrich/South_Africa/A 4 7.90e-10 GGA TTATTTGGGGCTATA GCA
951 A/whooper_swan/Hokkaido/ 7 8.51e-10 AGAGGA CTGTTTGGAGCTATA
952 A/chicken/Cambodia/TLC2/ 4 1.22e-09 GGA TTATTTGGAGCTATA GCA
953 A/chicken/Cambodia/013LC 7 1.22e-09 AGGGGA TTATTTGGAGCTATA
954 A/avian/New_York/Sg00387 4 3.23e-09 GGC CTATTTGGAGCAATA GCA
955 A/avian/New_York/Sg00372 1 3.23e-09 . CTATTTGGAGCAATA GCAGGA
956 A/chicken/Egypt/1219s/20 5 4.76e-09 GGAG CTATAGCAGGCTTTA TA
957 A/chicken/Egypt/128s/201 2 4.76e-09 G CTATAGCAGGCTTTA TAGAG
958 A/chicken/Bangladesh/11r 1 7.12e-09 . TTGTTTGGAGCTATA GCAGGG
959 A/duck/Primorie/2621/200 2 1.97e-08 G CTATAGCAGGCTTCA TAGAA
960 A/turkey/England/N28/73| 2 2.10e-08 G CTATAGCGGGTTTTA TAGAA
961 A/chicken/Egypt/125s/201 5 5.87e-08 GGAG CTATAGCAGGTTTTA TA
962 A/chicken/Egypt/398252/2 2 5.87e-08 G CTATAGCAGGTTTTA TAGAG
963 A/chicken/Italy/9097/199 2 1.05e-07 G CCATAGCAGGCTTCA TAGAG
964 --------------------------------------------------------------------------------
966 --------------------------------------------------------------------------------
967 Motif 3 block diagrams
968 --------------------------------------------------------------------------------
969 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
970 ------------- ---------------- -------------
971 A/chicken/Bangladesh/FD( 4.2e-11 [3]_6
972 A/tern/South_Africa/1959 4.2e-11 3_[3]_3
973 A/mallard/Netherlands/3/ 4.2e-11 3_[3]_3
974 A/duck/Primorie/2633/200 4.2e-11 [3]_6
975 A/wild_bird_feces/Cheons 4.2e-11 6_[3]
976 A/chicken/Bangladesh/11r 8.3e-11 [3]_6
977 A/turkey/Egypt/091QNLQP/ 8.3e-11 [3]_6
978 A/duck/Hong_Kong/312/197 8.3e-11 [3]_6
979 A/chicken/Bangladesh/11r 8.3e-11 3_[3]_3
980 A/chicken/Turkey/Misinli 8.3e-11 6_[3]
981 A/wild_bird_feces/Byeong 6.6e-10 3_[3]_3
982 A/ostrich/South_Africa/A 7.9e-10 3_[3]_3
983 A/whooper_swan/Hokkaido/ 8.5e-10 6_[3]
984 A/chicken/Cambodia/TLC2/ 1.2e-09 3_[3]_3
985 A/chicken/Cambodia/013LC 1.2e-09 6_[3]
986 A/avian/New_York/Sg00387 3.2e-09 3_[3]_3
987 A/avian/New_York/Sg00372 3.2e-09 [3]_6
988 A/chicken/Egypt/1219s/20 4.8e-09 4_[3]_2
989 A/chicken/Egypt/128s/201 4.8e-09 1_[3]_5
990 A/chicken/Bangladesh/11r 7.1e-09 [3]_6
991 A/duck/Primorie/2621/200 2e-08 1_[3]_5
992 A/turkey/England/N28/73| 2.1e-08 1_[3]_5
993 A/chicken/Egypt/125s/201 5.9e-08 4_[3]_2
994 A/chicken/Egypt/398252/2 5.9e-08 1_[3]_5
995 A/chicken/Italy/9097/199 1.1e-07 1_[3]_5
996 --------------------------------------------------------------------------------
998 --------------------------------------------------------------------------------
999 Motif 3 in BLOCKS format
1000 --------------------------------------------------------------------------------
1001 BL MOTIF 3 width=15 seqs=25
1002 A/chicken/Bangladesh/FD( ( 1) CTATTTGGGGCTATA 1
1003 A/tern/South_Africa/1959 ( 4) CTATTTGGGGCTATA 1
1004 A/mallard/Netherlands/3/ ( 4) CTATTTGGGGCTATA 1
1005 A/duck/Primorie/2633/200 ( 1) CTATTTGGGGCTATA 1
1006 A/wild_bird_feces/Cheons ( 7) CTATTTGGGGCTATA 1
1007 A/chicken/Bangladesh/11r ( 1) CTATTTGGAGCTATA 1
1008 A/turkey/Egypt/091QNLQP/ ( 1) CTATTTGGAGCTATA 1
1009 A/duck/Hong_Kong/312/197 ( 1) CTATTTGGAGCTATA 1
1010 A/chicken/Bangladesh/11r ( 4) CTATTTGGAGCTATA 1
1011 A/chicken/Turkey/Misinli ( 7) CTATTTGGAGCTATA 1
1012 A/wild_bird_feces/Byeong ( 4) CTATTTGGGGCCATA 1
1013 A/ostrich/South_Africa/A ( 4) TTATTTGGGGCTATA 1
1014 A/whooper_swan/Hokkaido/ ( 7) CTGTTTGGAGCTATA 1
1015 A/chicken/Cambodia/TLC2/ ( 4) TTATTTGGAGCTATA 1
1016 A/chicken/Cambodia/013LC ( 7) TTATTTGGAGCTATA 1
1017 A/avian/New_York/Sg00387 ( 4) CTATTTGGAGCAATA 1
1018 A/avian/New_York/Sg00372 ( 1) CTATTTGGAGCAATA 1
1019 A/chicken/Egypt/1219s/20 ( 5) CTATAGCAGGCTTTA 1
1020 A/chicken/Egypt/128s/201 ( 2) CTATAGCAGGCTTTA 1
1021 A/chicken/Bangladesh/11r ( 1) TTGTTTGGAGCTATA 1
1022 A/duck/Primorie/2621/200 ( 2) CTATAGCAGGCTTCA 1
1023 A/turkey/England/N28/73| ( 2) CTATAGCGGGTTTTA 1
1024 A/chicken/Egypt/125s/201 ( 5) CTATAGCAGGTTTTA 1
1025 A/chicken/Egypt/398252/2 ( 2) CTATAGCAGGTTTTA 1
1026 A/chicken/Italy/9097/199 ( 2) CCATAGCAGGCTTCA 1
1027 //
1029 --------------------------------------------------------------------------------
1031 --------------------------------------------------------------------------------
1032 Motif 3 position-specific scoring matrix
1033 --------------------------------------------------------------------------------
1034 log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 7.27007 E= 2.5e-074
1035 -645 376 -59 141 129 -726 76 206 -39 233 103 17 205 135 -98 412 25 289 -134 -19
1036 -618 -75 62 244 220 -712 186 351 146 325 268 227 269 290 36 614 291 420 -37 67
1037 89 -475 23 253 219 -208 148 280 77 338 228 123 294 244 -3 579 -466 451 -48 53
1038 -910 -801 -108 32 30 -879 20 64 -91 115 -28 -45 112 53 -168 292 302 126 -174 -92
1039 -78 -504 -6 202 174 -601 124 246 37 281 186 132 303 232 -31 573 250 397 -90 16
1040 -650 -639 -37 120 81 -27 66 112 -41 174 50 50 201 131 -117 429 253 254 -150 -52
1041 -712 215 -72 83 52 111 39 51 -76 136 -11 -16 167 82 -143 352 -673 189 -161 -72
1042 -116 -537 135 300 189 118 194 232 141 278 184 208 304 257 47 538 -502 367 -28 71
1043 -14 -524 -28 175 145 71 99 186 -6 247 142 93 286 200 -62 539 -492 363 -112 -10
1044 -729 -729 104 252 116 157 152 135 103 189 78 150 202 178 0 355 -699 203 -65 23
1045 -649 389 31 275 239 -749 174 337 71 349 240 92 235 218 11 399 -104 337 -71 60
1046 -252 -76 84 282 251 -605 211 372 167 358 300 255 333 326 66 662 276 468 -14 90
1047 55 -499 -21 194 166 -592 111 222 12 274 169 109 305 221 -44 564 115 394 -98 8
1048 -618 25 44 227 204 -710 169 331 124 309 246 204 260 271 17 594 286 403 -52 53
1049 104 -669 -98 78 66 -755 33 86 -85 164 19 -39 169 86 -147 374 -655 233 -159 -72
1050 --------------------------------------------------------------------------------
1052 --------------------------------------------------------------------------------
1053 Motif 3 position-specific probability matrix
1054 --------------------------------------------------------------------------------
1055 letter-probability matrix: alength= 20 w= 15 nsites= 25 E= 2.5e-074
1056 0.000000 0.840000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.160000 0.000000 0.000000 0.000000
1057 0.000000 0.040000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.000000 0.000000
1058 0.920000 0.000000 0.000000 0.000000 0.000000 0.080000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1059 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1060 0.280000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.720000 0.000000 0.000000 0.000000
1061 0.000000 0.000000 0.000000 0.000000 0.000000 0.280000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.720000 0.000000 0.000000 0.000000
1062 0.000000 0.280000 0.000000 0.000000 0.000000 0.720000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1063 0.240000 0.000000 0.000000 0.000000 0.000000 0.760000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1064 0.440000 0.000000 0.000000 0.000000 0.000000 0.560000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1065 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1066 0.000000 0.880000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.120000 0.000000 0.000000 0.000000
1067 0.080000 0.040000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.880000 0.000000 0.000000 0.000000
1068 0.720000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.280000 0.000000 0.000000 0.000000
1069 0.000000 0.080000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.920000 0.000000 0.000000 0.000000
1070 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1071 --------------------------------------------------------------------------------
1073 --------------------------------------------------------------------------------
1074 Motif 3 regular expression
1075 --------------------------------------------------------------------------------
1076 CTAT[TA][TG][GC][GA][GA]GCT[AT]TA
1077 --------------------------------------------------------------------------------
1082 Time 56.86 secs.
1084 ********************************************************************************
1087 ********************************************************************************
1088 MOTIF 4 width = 15 sites = 18 llr = 248 E-value = 1.6e-011
1089 ********************************************************************************
1090 --------------------------------------------------------------------------------
1091 Motif 4 Description
1092 --------------------------------------------------------------------------------
1093 Simplified A a:7:76:36::7:::
1094 pos.-specific C ::::::::1::::::
1095 probability D :::::::::::::::
1096 matrix E :::::::::::::::
1097 F :::::::::::::::
1098 G ::3a:4a71aa::aa
1099 H :::::::::::::::
1100 I :::::::::::::::
1101 K :::::::::::::::
1102 L :::::::::::::::
1103 M :::::::::::::::
1104 N :::::::::::::::
1105 P :::::::::::::::
1106 Q :::::::::::::::
1107 R :::::::::::::::
1108 S :::::::::::::::
1109 T :a::3:::3::3a::
1110 V :::::::::::::::
1111 W :::::::::::::::
1112 Y :::::::::::::::
1114 bits 12.4
1115 11.1
1116 9.9
1117 8.7
1118 Relative 7.4
1119 Entropy 6.2
1120 (19.9 bits) 5.0
1121 3.7
1122 2.5 * *
1123 1.2 ** ** * ******
1124 0.0 ---------------
1126 Multilevel ATAGAAGGAGGATGG
1127 consensus G TG AT T
1128 sequence
1131 --------------------------------------------------------------------------------
1133 --------------------------------------------------------------------------------
1134 Motif 4 sites sorted by position p-value
1135 --------------------------------------------------------------------------------
1136 Sequence name Start P-value Site
1137 ------------- ----- --------- ---------------
1138 A/VietNam/HN31413/2008 1 1.21e-07 . ATAGAGGGTGGATGG CAGGGA
1139 A/Muscovy_Duck/Vietnam/1 1 2.36e-07 . ATAGAGGGCGGATGG CAGGGA
1140 A/chicken/Vietnam/NCVD11 4 3.75e-07 TTT ATAGAAGGAGGATGG CAG
1141 A/environment/Bangladesh 1 3.75e-07 . ATAGAAGGAGGATGG CAGGGA
1142 A/chicken/Queretaro/7653 4 3.75e-07 TTC ATAGAAGGAGGATGG CAA
1143 A_GenBank/heron/Cambodia 7 3.75e-07 GGGTTT ATAGAAGGAGGATGG
1144 A/heron/Cambodia/TM068/2 1 3.75e-07 . ATAGAAGGAGGATGG CAGGGG
1145 A/Hong_Kong/7032/2012 4 4.39e-07 TTT ATAGAGGGAGGATGG CAG
1146 A/duck/Vietnam/NCVD1161/ 4 4.39e-07 TTT ATAGAGGGAGGATGG CAA
1147 A/pigeon/Egypt/SHAH5803/ 1 4.39e-07 . ATAGAGGGAGGATGG CAGGGA
1148 A/environment/Bangladesh 1 4.39e-07 . ATAGAGGGAGGATGG CAGGGG
1149 A/chicken/Egypt/39825/20 7 4.39e-07 GGTTTT ATAGAGGGAGGATGG
1150 A/chicken/TanseMyanmar/S 4 6.25e-07 GGA ATGGTAGATGGTTGG TAT
1151 A/Egypt/2786NAMRU3/2006 7 6.25e-07 CAGGGA ATGGTAGATGGTTGG
1152 A/chicken/BacLieuVietnam 4 6.25e-07 GGG ATGGTAGATGGTTGG TAT
1153 A/poultry/Egypt/398256/2 1 6.25e-07 . ATGGTAGATGGTTGG TATGGG
1154 A/chicken/Nepal/354/2010 4 7.69e-07 GGA ATGGTAGACGGTTGG TAT
1155 A/Indonesia/625/2006 4 1.47e-06 TTT ATAGAAGGGGGATGG CAG
1156 --------------------------------------------------------------------------------
1158 --------------------------------------------------------------------------------
1159 Motif 4 block diagrams
1160 --------------------------------------------------------------------------------
1161 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
1162 ------------- ---------------- -------------
1163 A/VietNam/HN31413/2008 1.2e-07 [4]_6
1164 A/Muscovy_Duck/Vietnam/1 2.4e-07 [4]_6
1165 A/chicken/Vietnam/NCVD11 3.7e-07 3_[4]_3
1166 A/environment/Bangladesh 3.7e-07 [4]_6
1167 A/chicken/Queretaro/7653 3.7e-07 3_[4]_3
1168 A_GenBank/heron/Cambodia 3.7e-07 6_[4]
1169 A/heron/Cambodia/TM068/2 3.7e-07 [4]_6
1170 A/Hong_Kong/7032/2012 4.4e-07 3_[4]_3
1171 A/duck/Vietnam/NCVD1161/ 4.4e-07 3_[4]_3
1172 A/pigeon/Egypt/SHAH5803/ 4.4e-07 [4]_6
1173 A/environment/Bangladesh 4.4e-07 [4]_6
1174 A/chicken/Egypt/39825/20 4.4e-07 6_[4]
1175 A/chicken/TanseMyanmar/S 6.2e-07 3_[4]_3
1176 A/Egypt/2786NAMRU3/2006 6.2e-07 6_[4]
1177 A/chicken/BacLieuVietnam 6.2e-07 3_[4]_3
1178 A/poultry/Egypt/398256/2 6.2e-07 [4]_6
1179 A/chicken/Nepal/354/2010 7.7e-07 3_[4]_3
1180 A/Indonesia/625/2006 1.5e-06 3_[4]_3
1181 --------------------------------------------------------------------------------
1183 --------------------------------------------------------------------------------
1184 Motif 4 in BLOCKS format
1185 --------------------------------------------------------------------------------
1186 BL MOTIF 4 width=15 seqs=18
1187 A/VietNam/HN31413/2008 ( 1) ATAGAGGGTGGATGG 1
1188 A/Muscovy_Duck/Vietnam/1 ( 1) ATAGAGGGCGGATGG 1
1189 A/chicken/Vietnam/NCVD11 ( 4) ATAGAAGGAGGATGG 1
1190 A/environment/Bangladesh ( 1) ATAGAAGGAGGATGG 1
1191 A/chicken/Queretaro/7653 ( 4) ATAGAAGGAGGATGG 1
1192 A_GenBank/heron/Cambodia ( 7) ATAGAAGGAGGATGG 1
1193 A/heron/Cambodia/TM068/2 ( 1) ATAGAAGGAGGATGG 1
1194 A/Hong_Kong/7032/2012 ( 4) ATAGAGGGAGGATGG 1
1195 A/duck/Vietnam/NCVD1161/ ( 4) ATAGAGGGAGGATGG 1
1196 A/pigeon/Egypt/SHAH5803/ ( 1) ATAGAGGGAGGATGG 1
1197 A/environment/Bangladesh ( 1) ATAGAGGGAGGATGG 1
1198 A/chicken/Egypt/39825/20 ( 7) ATAGAGGGAGGATGG 1
1199 A/chicken/TanseMyanmar/S ( 4) ATGGTAGATGGTTGG 1
1200 A/Egypt/2786NAMRU3/2006 ( 7) ATGGTAGATGGTTGG 1
1201 A/chicken/BacLieuVietnam ( 4) ATGGTAGATGGTTGG 1
1202 A/poultry/Egypt/398256/2 ( 1) ATGGTAGATGGTTGG 1
1203 A/chicken/Nepal/354/2010 ( 4) ATGGTAGACGGTTGG 1
1204 A/Indonesia/625/2006 ( 4) ATAGAAGGGGGATGG 1
1205 //
1207 --------------------------------------------------------------------------------
1209 --------------------------------------------------------------------------------
1210 Motif 4 position-specific scoring matrix
1211 --------------------------------------------------------------------------------
1212 log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 5.89847 E= 1.6e-011
1213 103 -568 -19 181 160 -667 110 204 14 270 138 48 237 174 -60 477 -563 356 -81 13
1214 -802 -703 -25 128 119 -810 101 195 17 211 105 77 185 158 -75 435 301 255 -102 -11
1215 54 -459 35 247 214 -33 160 263 66 322 216 154 340 263 3 602 -431 439 -48 55
1216 -637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
1217 53 -448 35 253 222 -543 165 284 72 332 227 162 353 273 11 615 111 451 -45 62
1218 31 -468 26 232 199 16 151 244 50 304 199 149 339 256 -8 595 -436 421 -61 44
1219 -637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
1220 -101 -489 172 339 231 111 233 275 178 321 227 247 348 299 85 585 -454 414 10 110
1221 18 75 47 272 242 -250 179 299 91 354 251 174 364 289 27 633 108 474 -27 78
1222 -637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
1223 -637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
1224 53 -448 35 253 222 -543 165 284 72 332 227 162 353 273 11 615 111 451 -45 62
1225 -802 -703 -25 128 119 -810 101 195 17 211 105 77 185 158 -75 435 301 255 -102 -11
1226 -637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
1227 -637 -650 192 341 193 154 233 222 192 266 167 242 277 262 86 446 -613 291 11 103
1228 --------------------------------------------------------------------------------
1230 --------------------------------------------------------------------------------
1231 Motif 4 position-specific probability matrix
1232 --------------------------------------------------------------------------------
1233 letter-probability matrix: alength= 20 w= 15 nsites= 18 E= 1.6e-011
1234 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1235 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1236 0.722222 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1237 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1238 0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000
1239 0.611111 0.000000 0.000000 0.000000 0.000000 0.388889 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1240 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1241 0.277778 0.000000 0.000000 0.000000 0.000000 0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1242 0.555556 0.111111 0.000000 0.000000 0.000000 0.055556 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000
1243 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1244 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1245 0.722222 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.277778 0.000000 0.000000 0.000000
1246 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1247 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1248 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1249 --------------------------------------------------------------------------------
1251 --------------------------------------------------------------------------------
1252 Motif 4 regular expression
1253 --------------------------------------------------------------------------------
1254 AT[AG]G[AT][AG]G[GA][AT]GG[AT]TGG
1255 --------------------------------------------------------------------------------
1260 Time 57.67 secs.
1262 ********************************************************************************
1265 ********************************************************************************
1266 MOTIF 5 width = 14 sites = 12 llr = 196 E-value = 8.3e-010
1267 ********************************************************************************
1268 --------------------------------------------------------------------------------
1269 Motif 5 Description
1270 --------------------------------------------------------------------------------
1271 Simplified A :7a1a::81:61::
1272 pos.-specific C a2::::713::::3
1273 probability D ::::::::::::1:
1274 matrix E ::::::::::::::
1275 F ::::::::::::::
1276 G :::2:a3:773:::
1277 H ::::::::::::::
1278 I ::::::::::::::
1279 K ::::::::::::::
1280 L ::::::::::::::
1281 M ::::::::::::::
1282 N ::::::::::::::
1283 P ::::::::::::::
1284 Q ::::::::::::::
1285 R ::::::::::::::
1286 S ::::::::::::::
1287 T :2:8::11:32997
1288 V ::::::::::::::
1289 W ::::::::::::::
1290 Y :::::::::1::::
1292 bits 12.4
1293 11.1
1294 9.9
1295 8.7
1296 Relative 7.4
1297 Entropy 6.2
1298 (23.6 bits) 5.0
1299 3.7 * *
1300 2.5 * * ***
1301 1.2 ********** ***
1302 0.0 --------------
1304 Multilevel CAATAGCAGGATTT
1305 consensus G CTG C
1306 sequence
1309 --------------------------------------------------------------------------------
1311 --------------------------------------------------------------------------------
1312 Motif 5 sites sorted by position p-value
1313 --------------------------------------------------------------------------------
1314 Sequence name Start P-value Site
1315 ------------- ----- --------- --------------
1316 A/Chicken/TurkeyEdirne/0 2 1.90e-09 G CCATAGCAGGTTTT ATAGAG
1317 A/Canada_goose/Alaska//4 5 4.78e-09 GGAG CAATAGCAGGATTT ATA
1318 A/mallard/Washington/456 8 4.78e-09 TTTGGAG CAATAGCAGGATTT
1319 A/wild_bird/Wisconsin/43 2 5.66e-09 G CAATAGCAGGATTC ATAGAA
1320 A/avian/New_York/Sg00377 8 5.66e-09 TTTGGAG CAATAGCAGGATTC
1321 A/chicken/Egypt/398220/2 8 5.66e-09 TTTGGAG CTATAGCAGGTTTT
1322 A/chicken/Bangladesh/11r 8 1.10e-08 TTTGGAG CTATAGCAGGGTTT
1323 A/chicken/Puebla/1458665 5 1.20e-08 GGAG CAATAGCCGGATTC ATA
1324 A/duck/Bangladesh/5749/1 3 4.54e-08 CA CCATAGTAAYGADC AGGGG
1325 A/wild_bird_feces/Cheons 5 5.98e-07 GAAA CAAGAGGACTATTT GGG
1326 A/turkey/MN/40550/1987_H 5 9.56e-07 GAAA CAAGAGGACTGTTT GGA
1327 A/duck/Korea/GJ54/2004|G 5 2.69e-06 GAAA CAAAAGGTCTATTT GGG
1328 --------------------------------------------------------------------------------
1330 --------------------------------------------------------------------------------
1331 Motif 5 block diagrams
1332 --------------------------------------------------------------------------------
1333 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
1334 ------------- ---------------- -------------
1335 A/Chicken/TurkeyEdirne/0 1.9e-09 1_[5]_6
1336 A/Canada_goose/Alaska//4 4.8e-09 4_[5]_3
1337 A/mallard/Washington/456 4.8e-09 7_[5]
1338 A/wild_bird/Wisconsin/43 5.7e-09 1_[5]_6
1339 A/avian/New_York/Sg00377 5.7e-09 7_[5]
1340 A/chicken/Egypt/398220/2 5.7e-09 7_[5]
1341 A/chicken/Bangladesh/11r 1.1e-08 7_[5]
1342 A/chicken/Puebla/1458665 1.2e-08 4_[5]_3
1343 A/duck/Bangladesh/5749/1 4.5e-08 2_[5]_5
1344 A/wild_bird_feces/Cheons 6e-07 4_[5]_3
1345 A/turkey/MN/40550/1987_H 9.6e-07 4_[5]_3
1346 A/duck/Korea/GJ54/2004|G 2.7e-06 4_[5]_3
1347 --------------------------------------------------------------------------------
1349 --------------------------------------------------------------------------------
1350 Motif 5 in BLOCKS format
1351 --------------------------------------------------------------------------------
1352 BL MOTIF 5 width=14 seqs=12
1353 A/Chicken/TurkeyEdirne/0 ( 2) CCATAGCAGGTTTT 1
1354 A/Canada_goose/Alaska//4 ( 5) CAATAGCAGGATTT 1
1355 A/mallard/Washington/456 ( 8) CAATAGCAGGATTT 1
1356 A/wild_bird/Wisconsin/43 ( 2) CAATAGCAGGATTC 1
1357 A/avian/New_York/Sg00377 ( 8) CAATAGCAGGATTC 1
1358 A/chicken/Egypt/398220/2 ( 8) CTATAGCAGGTTTT 1
1359 A/chicken/Bangladesh/11r ( 8) CTATAGCAGGGTTT 1
1360 A/chicken/Puebla/1458665 ( 5) CAATAGCCGGATTC 1
1361 A/duck/Bangladesh/5749/1 ( 3) CCATAGTAAYGADC 1
1362 A/wild_bird_feces/Cheons ( 5) CAAGAGGACTATTT 1
1363 A/turkey/MN/40550/1987_H ( 5) CAAGAGGACTGTTT 1
1364 A/duck/Korea/GJ54/2004|G ( 5) CAAAAGGTCTATTT 1
1365 //
1367 --------------------------------------------------------------------------------
1369 --------------------------------------------------------------------------------
1370 Motif 5 position-specific scoring matrix
1371 --------------------------------------------------------------------------------
1372 log-odds matrix: alength= 20 w= 14 n= 2024 bayes= 8.98014 E= 8.3e-010
1373 -651 396 86 340 298 -767 231 401 130 410 306 140 263 270 70 389 -504 373 -26 110
1374 43 106 151 393 360 -455 278 435 220 486 375 250 410 376 132 711 14 598 85 189
1375 98 -441 91 317 287 -554 215 351 148 408 285 160 320 290 58 604 -449 507 27 127
1376 -228 -392 163 357 309 -117 274 404 213 417 341 307 417 383 120 714 249 528 42 152
1377 98 -441 91 317 287 -554 215 351 148 408 285 160 320 290 58 604 -449 507 27 127
1378 -557 -578 269 419 263 151 306 299 269 336 245 321 344 337 161 525 -538 368 81 175
1379 -393 330 123 315 276 -52 231 336 137 384 277 241 407 332 68 665 -55 496 6 122
1380 67 -43 230 487 448 -413 349 526 317 581 468 294 398 436 210 762 -126 692 169 270
1381 -244 156 218 390 290 101 284 341 228 385 292 300 411 358 137 657 -381 485 61 164
1382 -469 -485 325 472 396 112 371 373 318 414 311 390 397 404 201 615 21 458 143 701
1383 23 -372 130 350 307 -57 248 367 170 422 317 244 415 353 94 689 31 539 36 144
1384 -264 -405 206 397 360 -558 326 499 295 469 418 378 412 440 183 768 274 571 95 201
1385 -553 -454 632 449 357 -627 355 498 321 461 418 418 387 454 193 762 276 552 96 211
1386 -473 221 124 312 300 -568 248 427 192 414 323 271 368 347 93 670 238 511 31 151
1387 --------------------------------------------------------------------------------
1389 --------------------------------------------------------------------------------
1390 Motif 5 position-specific probability matrix
1391 --------------------------------------------------------------------------------
1392 letter-probability matrix: alength= 20 w= 14 nsites= 12 E= 8.3e-010
1393 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1394 0.666667 0.166667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000
1395 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1396 0.083333 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.750000 0.000000 0.000000 0.000000
1397 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1398 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1399 0.000000 0.666667 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.000000 0.000000
1400 0.833333 0.083333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.000000 0.000000
1401 0.083333 0.250000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1402 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.083333
1403 0.583333 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000
1404 0.083333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.000000 0.000000
1405 0.000000 0.000000 0.083333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.916667 0.000000 0.000000 0.000000
1406 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.000000
1407 --------------------------------------------------------------------------------
1409 --------------------------------------------------------------------------------
1410 Motif 5 regular expression
1411 --------------------------------------------------------------------------------
1412 CAATAG[CG]A[GC][GT][AG]TT[TC]
1413 --------------------------------------------------------------------------------
1418 Time 58.49 secs.
1420 ********************************************************************************
1423 ********************************************************************************
1424 MOTIF 6 width = 21 sites = 4 llr = 106 E-value = 2.1e-004
1425 ********************************************************************************
1426 --------------------------------------------------------------------------------
1427 Motif 6 Description
1428 --------------------------------------------------------------------------------
1429 Simplified A ::a::::::a:a:a:::8::a
1430 pos.-specific C :a:::3:::::::::::3:::
1431 probability D :::::::::::::::::::::
1432 matrix E :::::::::::::::::::::
1433 F :::::::::::::::::::::
1434 G a::aa3::::::a:aaa:aa:
1435 H :::::::::::::::::::::
1436 I :::::::::::::::::::::
1437 K :::::::::::::::::::::
1438 L :::::::::::::::::::::
1439 M :::::::::::::::::::::
1440 N :::::::::::::::::::::
1441 P :::::::::::::::::::::
1442 Q :::::::::::::::::::::
1443 R :::::::::::::::::::::
1444 S :::::::::::::::::::::
1445 T :::::5aaa:a::::::::::
1446 V :::::::::::::::::::::
1447 W :::::::::::::::::::::
1448 Y :::::::::::::::::::::
1450 bits 12.4
1451 11.1
1452 9.9
1453 8.7
1454 Relative 7.4
1455 Entropy 6.2
1456 (38.2 bits) 5.0
1457 3.7 *
1458 2.5 * *** *
1459 1.2 *********************
1460 0.0 ---------------------
1462 Multilevel GCAGGTTTTATAGAGGGAGGA
1463 consensus C C
1464 sequence G
1467 --------------------------------------------------------------------------------
1469 --------------------------------------------------------------------------------
1470 Motif 6 sites sorted by position p-value
1471 --------------------------------------------------------------------------------
1472 Sequence name Start P-value Site
1473 ------------- ----- --------- ---------------------
1474 A/chicken/Indonesia/SmiW 1 5.44e-12 . GCAGGTTTTATAGAGGGAGGA
1475 A/chicken/Egypt/10117/20 1 6.47e-12 . GCAGGTTTTATAGAGGGCGGA
1476 A/turkey/Italy/1980|GQ24 1 7.65e-12 . GCAGGCTTTATAGAGGGAGGA
1477 A/chicken/Egypt/398214/2 1 2.63e-11 . GCAGGGTTTATAGAGGGAGGA
1478 --------------------------------------------------------------------------------
1480 --------------------------------------------------------------------------------
1481 Motif 6 block diagrams
1482 --------------------------------------------------------------------------------
1483 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
1484 ------------- ---------------- -------------
1485 A/chicken/Indonesia/SmiW 5.4e-12 [6]
1486 A/chicken/Egypt/10117/20 6.5e-12 [6]
1487 A/turkey/Italy/1980|GQ24 7.6e-12 [6]
1488 A/chicken/Egypt/398214/2 2.6e-11 [6]
1489 --------------------------------------------------------------------------------
1491 --------------------------------------------------------------------------------
1492 Motif 6 in BLOCKS format
1493 --------------------------------------------------------------------------------
1494 BL MOTIF 6 width=21 seqs=4
1495 A/chicken/Indonesia/SmiW ( 1) GCAGGTTTTATAGAGGGAGGA 1
1496 A/chicken/Egypt/10117/20 ( 1) GCAGGTTTTATAGAGGGCGGA 1
1497 A/turkey/Italy/1980|GQ24 ( 1) GCAGGCTTTATAGAGGGAGGA 1
1498 A/chicken/Egypt/398214/2 ( 1) GCAGGGTTTATAGAGGGAGGA 1
1499 //
1501 --------------------------------------------------------------------------------
1503 --------------------------------------------------------------------------------
1504 Motif 6 position-specific scoring matrix
1505 --------------------------------------------------------------------------------
1506 log-odds matrix: alength= 20 w= 21 n= 253 bayes= 5.96 E= 2.1e-004
1507 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1508 -639 396 94 349 308 -756 240 412 140 420 315 150 272 279 79 401 -494 386 -17 121
1509 73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
1510 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1511 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1512 -292 122 347 562 501 -98 460 615 424 631 526 464 546 559 300 849 176 692 212 358
1513 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1514 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1515 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1516 73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
1517 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1518 73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
1519 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1520 73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
1521 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1522 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1523 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1524 55 34 281 536 499 -365 403 587 369 634 518 351 466 491 261 809 -257 740 218 326
1525 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1526 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1527 73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
1528 --------------------------------------------------------------------------------
1530 --------------------------------------------------------------------------------
1531 Motif 6 position-specific probability matrix
1532 --------------------------------------------------------------------------------
1533 letter-probability matrix: alength= 20 w= 21 nsites= 4 E= 2.1e-004
1534 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1535 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1536 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1537 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1538 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1539 0.000000 0.250000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000
1540 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1541 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1542 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1543 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1544 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1545 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1546 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1547 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1548 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1549 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1550 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1551 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1552 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1553 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1554 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1555 --------------------------------------------------------------------------------
1557 --------------------------------------------------------------------------------
1558 Motif 6 regular expression
1559 --------------------------------------------------------------------------------
1560 GCAGG[TCG]TTTATAGAGGG[AC]GGA
1561 --------------------------------------------------------------------------------
1566 Time 59.26 secs.
1568 ********************************************************************************
1571 ********************************************************************************
1572 MOTIF 7 width = 17 sites = 4 llr = 97 E-value = 6.2e-002
1573 ********************************************************************************
1574 --------------------------------------------------------------------------------
1575 Motif 7 Description
1576 --------------------------------------------------------------------------------
1577 Simplified A :a::8::5:::::a:::
1578 pos.-specific C :::::8:::::::::a:
1579 probability D :::::::::::::::::
1580 matrix E :::::::::::::::::
1581 F :::::::::::::::::
1582 G a:aa:::5:::aa:a::
1583 H :::::::::::::::::
1584 I :::::::::::::::::
1585 K :::::::::::::::::
1586 L :::::::::::::::::
1587 M :::::::::::::::::
1588 N :::::::::::::::::
1589 P :::::::::::::::::
1590 Q :::::::::::::::::
1591 R :::::::::::::::::
1592 S :::::::::::::::::
1593 T ::::33a:aaa:::::a
1594 V :::::::::::::::::
1595 W :::::::::::::::::
1596 Y :::::::::::::::::
1598 bits 12.4
1599 11.1
1600 9.9
1601 8.7
1602 Relative 7.4
1603 Entropy 6.2
1604 (34.9 bits) 5.0
1605 3.7 *
1606 2.5 ** *** **
1607 1.2 ******* *********
1608 0.0 -----------------
1610 Multilevel GAGGACTGTTTGGAGCT
1611 consensus TT A
1612 sequence
1615 --------------------------------------------------------------------------------
1617 --------------------------------------------------------------------------------
1618 Motif 7 sites sorted by position p-value
1619 --------------------------------------------------------------------------------
1620 Sequence name Start P-value Site
1621 ------------- ----- --------- -----------------
1622 A/common_magpie/HongKong 5 1.62e-11 AAAA GAGGACTGTTTGGAGCT
1623 A/Chicken/TurkeyMus/09rs 5 3.22e-11 AAGA GAGGACTATTTGGAGCT
1624 A/ck/Indonesia/091/10 5 4.14e-11 AAGA GAGGTCTATTTGGAGCT
1625 A/chicken/Bangladesh/11r 5 6.12e-10 AAAA GAGGATTGTTTGGAGCT
1626 --------------------------------------------------------------------------------
1628 --------------------------------------------------------------------------------
1629 Motif 7 block diagrams
1630 --------------------------------------------------------------------------------
1631 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
1632 ------------- ---------------- -------------
1633 A/common_magpie/HongKong 1.6e-11 4_[7]
1634 A/Chicken/TurkeyMus/09rs 3.2e-11 4_[7]
1635 A/ck/Indonesia/091/10 4.1e-11 4_[7]
1636 A/chicken/Bangladesh/11r 6.1e-10 4_[7]
1637 --------------------------------------------------------------------------------
1639 --------------------------------------------------------------------------------
1640 Motif 7 in BLOCKS format
1641 --------------------------------------------------------------------------------
1642 BL MOTIF 7 width=17 seqs=4
1643 A/common_magpie/HongKong ( 5) GAGGACTGTTTGGAGCT 1
1644 A/Chicken/TurkeyMus/09rs ( 5) GAGGACTATTTGGAGCT 1
1645 A/ck/Indonesia/091/10 ( 5) GAGGTCTATTTGGAGCT 1
1646 A/chicken/Bangladesh/11r ( 5) GAGGATTGTTTGGAGCT 1
1647 //
1649 --------------------------------------------------------------------------------
1651 --------------------------------------------------------------------------------
1652 Motif 7 position-specific scoring matrix
1653 --------------------------------------------------------------------------------
1654 log-odds matrix: alength= 20 w= 17 n= 1265 bayes= 8.30035 E= 6.2e-002
1655 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1656 73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
1657 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1658 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1659 48 -241 309 566 497 -365 422 588 396 632 516 380 496 519 279 809 -13 731 215 332
1660 -593 393 110 361 324 -706 253 435 162 441 333 175 296 301 93 459 -298 429 0 142
1661 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1662 -44 -306 340 542 425 57 409 492 371 539 433 413 506 491 259 761 -280 630 175 291
1663 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1664 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1665 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1666 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1667 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1668 73 -256 279 533 480 -384 392 565 359 613 494 341 456 479 249 787 -278 716 202 312
1669 -462 -489 361 513 350 143 394 392 362 423 337 415 428 429 251 619 -444 462 164 263
1670 -639 396 94 349 308 -756 240 412 140 420 315 150 272 279 79 401 -494 386 -17 121
1671 -458 -371 302 494 448 -550 414 590 392 561 497 458 466 520 270 831 272 643 180 300
1672 --------------------------------------------------------------------------------
1674 --------------------------------------------------------------------------------
1675 Motif 7 position-specific probability matrix
1676 --------------------------------------------------------------------------------
1677 letter-probability matrix: alength= 20 w= 17 nsites= 4 E= 6.2e-002
1678 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1679 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1680 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1681 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1682 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000
1683 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000
1684 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1685 0.500000 0.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1686 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1687 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1688 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1689 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1690 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1691 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1692 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1693 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1694 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1695 --------------------------------------------------------------------------------
1697 --------------------------------------------------------------------------------
1698 Motif 7 regular expression
1699 --------------------------------------------------------------------------------
1700 GAGG[AT][CT]T[GA]TTTGGAGCT
1701 --------------------------------------------------------------------------------
1706 Time 59.96 secs.
1708 ********************************************************************************
1711 ********************************************************************************
1712 MOTIF 8 width = 11 sites = 5 llr = 88 E-value = 1.2e+000
1713 ********************************************************************************
1714 --------------------------------------------------------------------------------
1715 Motif 8 Description
1716 --------------------------------------------------------------------------------
1717 Simplified A ::::2:a::::
1718 pos.-specific C :8:::::a:a:
1719 probability D :::::::::::
1720 matrix E :::::::::::
1721 F :::::::::::
1722 G a:aa8:::a::
1723 H :::::::::::
1724 I :::::::::::
1725 K :::::::::::
1726 L :::::::::::
1727 M :::::::::::
1728 N :::::::::::
1729 P :::::::::::
1730 Q :::::::::::
1731 R :::::::::::
1732 S :::::::::::
1733 T :2:::a::::a
1734 V :::::::::::
1735 W :::::::::::
1736 Y :::::::::::
1738 bits 12.4
1739 11.1
1740 9.9
1741 8.7
1742 Relative 7.4
1743 Entropy 6.2
1744 (25.4 bits) 5.0
1745 3.7 * * *
1746 2.5 * * * **
1747 1.2 ***********
1748 0.0 -----------
1750 Multilevel GCGGGTACGCT
1751 consensus T A
1752 sequence
1755 --------------------------------------------------------------------------------
1757 --------------------------------------------------------------------------------
1758 Motif 8 sites sorted by position p-value
1759 --------------------------------------------------------------------------------
1760 Sequence name Start P-value Site
1761 ------------- ----- --------- -----------
1762 A/chicken/Vietnam/5/2010 5 8.62e-09 GGAA GCGGGTACGCT GCAGAC
1763 A/chicken/Vietnam/4/2010 2 8.62e-09 A GCGGGTACGCT GCAGACAAA
1764 A/duck/Vietnam/1/2010 11 8.62e-09 GAGCAGGGAA GCGGGTACGCT
1765 A/duck/Vietnam/3/2010 8 3.40e-08 CAGGGAA GCGGATACGCT GCA
1766 A/chicken/Egypt/11VIR445 11 1.63e-07 GAGCAGGGGA GTGGGTACGCT
1767 --------------------------------------------------------------------------------
1769 --------------------------------------------------------------------------------
1770 Motif 8 block diagrams
1771 --------------------------------------------------------------------------------
1772 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
1773 ------------- ---------------- -------------
1774 A/chicken/Vietnam/5/2010 8.6e-09 4_[8]_6
1775 A/chicken/Vietnam/4/2010 8.6e-09 1_[8]_9
1776 A/duck/Vietnam/1/2010 8.6e-09 10_[8]
1777 A/duck/Vietnam/3/2010 3.4e-08 7_[8]_3
1778 A/chicken/Egypt/11VIR445 1.6e-07 10_[8]
1779 --------------------------------------------------------------------------------
1781 --------------------------------------------------------------------------------
1782 Motif 8 in BLOCKS format
1783 --------------------------------------------------------------------------------
1784 BL MOTIF 8 width=11 seqs=5
1785 A/chicken/Vietnam/5/2010 ( 5) GCGGGTACGCT 1
1786 A/chicken/Vietnam/4/2010 ( 2) GCGGGTACGCT 1
1787 A/duck/Vietnam/1/2010 ( 11) GCGGGTACGCT 1
1788 A/duck/Vietnam/3/2010 ( 8) GCGGATACGCT 1
1789 A/chicken/Egypt/11VIR445 ( 11) GTGGGTACGCT 1
1790 //
1792 --------------------------------------------------------------------------------
1794 --------------------------------------------------------------------------------
1795 Motif 8 position-specific scoring matrix
1796 --------------------------------------------------------------------------------
1797 log-odds matrix: alength= 20 w= 11 n= 2783 bayes= 9.36986 E= 1.2e+000
1798 -474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
1799 -614 394 99 353 313 -730 244 420 147 427 321 160 282 287 84 430 -344 405 -12 127
1800 -474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
1801 -474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
1802 -292 -458 365 520 356 134 397 404 368 433 351 422 440 438 257 646 -413 486 166 265
1803 -486 -396 271 458 420 -574 386 560 360 530 468 430 440 490 240 803 278 613 156 272
1804 78 -274 255 506 459 -402 370 541 333 590 472 318 437 455 226 768 -297 695 183 290
1805 -641 396 93 347 307 -758 238 410 138 418 314 148 270 277 77 399 -496 383 -19 119
1806 -474 -500 350 502 339 144 383 380 351 412 326 404 418 417 241 608 -456 451 154 252
1807 -641 396 93 347 307 -758 238 410 138 418 314 148 270 277 77 399 -496 383 -19 119
1808 -486 -396 271 458 420 -574 386 560 360 530 468 430 440 490 240 803 278 613 156 272
1809 --------------------------------------------------------------------------------
1811 --------------------------------------------------------------------------------
1812 Motif 8 position-specific probability matrix
1813 --------------------------------------------------------------------------------
1814 letter-probability matrix: alength= 20 w= 11 nsites= 5 E= 1.2e+000
1815 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1816 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.000000
1817 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1818 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1819 0.200000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1820 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1821 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1822 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1823 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1824 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1825 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
1826 --------------------------------------------------------------------------------
1828 --------------------------------------------------------------------------------
1829 Motif 8 regular expression
1830 --------------------------------------------------------------------------------
1831 G[CT]GG[GA]TACGCT
1832 --------------------------------------------------------------------------------
1837 Time 60.70 secs.
1839 ********************************************************************************
1842 ********************************************************************************
1843 MOTIF 9 width = 21 sites = 11 llr = 162 E-value = 8.0e-003
1844 ********************************************************************************
1845 --------------------------------------------------------------------------------
1846 Motif 9 Description
1847 --------------------------------------------------------------------------------
1848 Simplified A :91a47a:aa:9aa9a92a:a
1849 pos.-specific C :::::1:::::::::::::::
1850 probability D :::::::::::::::::::::
1851 matrix E :::::::::::::::::::::
1852 F :::::::::::::::::::::
1853 G a19:62:a::a1::1:18:a:
1854 H :::::::::::::::::::::
1855 I :::::::::::::::::::::
1856 K :::::::::::::::::::::
1857 L :::::::::::::::::::::
1858 M :::::::::::::::::::::
1859 N :::::::::::::::::::::
1860 P :::::::::::::::::::::
1861 Q :::::::::::::::::::::
1862 R :::::::::::::::::::::
1863 S :::::::::::::::::::::
1864 T :::::::::::::::::::::
1865 V :::::::::::::::::::::
1866 W :::::::::::::::::::::
1867 Y :::::::::::::::::::::
1869 bits 12.4
1870 11.1
1871 9.9
1872 8.7
1873 Relative 7.4
1874 Entropy 6.2
1875 (21.3 bits) 5.0
1876 3.7
1877 2.5
1878 1.2 **** ***************
1879 0.0 ---------------------
1881 Multilevel GAGAGAAGAAGAAAAAAGAGA
1882 consensus A
1883 sequence
1886 --------------------------------------------------------------------------------
1888 --------------------------------------------------------------------------------
1889 Motif 9 sites sorted by position p-value
1890 --------------------------------------------------------------------------------
1891 Sequence name Start P-value Site
1892 ------------- ----- --------- ---------------------
1893 A/Egypt/9174NAMRU3/2009 1 3.52e-08 . GAGAGAAGAAGAAAAAAGAGA
1894 A/chicken/WestJava/SmiSu 1 4.74e-08 . GAGAGCAGAAGAAAAAAGAGA
1895 A/Egypt/N07460/2012 1 9.07e-08 . GAGAAAAGAAGAAAAAAGAGA
1896 A/chicken/Egypt/1123AL/2 1 1.20e-07 . GAGAGGAGAAGAAAAAAGAGA
1897 A/duck/Egypt/1130AG/2011 1 2.11e-07 . GAGAGAAGAAGGAAAAAGAGA
1898 A/chicken/Egypt/10259SF/ 1 2.11e-07 . GAGAGAAGAAGAAAAAGGAGA
1899 A/chicken/Egypt/1117AF/2 1 3.30e-07 . GAGAGAAGAAGAAAAAAAAGA
1900 A/Egypt/N6774/2011 1 5.02e-07 . GGGAAAAGAAGAAAAAAGAGA
1901 A/chicken/Egypt/1090/201 1 6.98e-07 . GAGAGGAGAAGAAAGAAGAGA
1902 A/chicken/Egypt/111945V/ 1 8.06e-07 . GAGAAAAGAAGAAAAAAAAGA
1903 A/quail/Egypt/1171SG/201 1 1.34e-06 . GAAAAAAGAAGAAAAAAGAGA
1904 --------------------------------------------------------------------------------
1906 --------------------------------------------------------------------------------
1907 Motif 9 block diagrams
1908 --------------------------------------------------------------------------------
1909 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
1910 ------------- ---------------- -------------
1911 A/Egypt/9174NAMRU3/2009 3.5e-08 [9]
1912 A/chicken/WestJava/SmiSu 4.7e-08 [9]
1913 A/Egypt/N07460/2012 9.1e-08 [9]
1914 A/chicken/Egypt/1123AL/2 1.2e-07 [9]
1915 A/duck/Egypt/1130AG/2011 2.1e-07 [9]
1916 A/chicken/Egypt/10259SF/ 2.1e-07 [9]
1917 A/chicken/Egypt/1117AF/2 3.3e-07 [9]
1918 A/Egypt/N6774/2011 5e-07 [9]
1919 A/chicken/Egypt/1090/201 7e-07 [9]
1920 A/chicken/Egypt/111945V/ 8.1e-07 [9]
1921 A/quail/Egypt/1171SG/201 1.3e-06 [9]
1922 --------------------------------------------------------------------------------
1924 --------------------------------------------------------------------------------
1925 Motif 9 in BLOCKS format
1926 --------------------------------------------------------------------------------
1927 BL MOTIF 9 width=21 seqs=11
1928 A/Egypt/9174NAMRU3/2009 ( 1) GAGAGAAGAAGAAAAAAGAGA 1
1929 A/chicken/WestJava/SmiSu ( 1) GAGAGCAGAAGAAAAAAGAGA 1
1930 A/Egypt/N07460/2012 ( 1) GAGAAAAGAAGAAAAAAGAGA 1
1931 A/chicken/Egypt/1123AL/2 ( 1) GAGAGGAGAAGAAAAAAGAGA 1
1932 A/duck/Egypt/1130AG/2011 ( 1) GAGAGAAGAAGGAAAAAGAGA 1
1933 A/chicken/Egypt/10259SF/ ( 1) GAGAGAAGAAGAAAAAGGAGA 1
1934 A/chicken/Egypt/1117AF/2 ( 1) GAGAGAAGAAGAAAAAAAAGA 1
1935 A/Egypt/N6774/2011 ( 1) GGGAAAAGAAGAAAAAAGAGA 1
1936 A/chicken/Egypt/1090/201 ( 1) GAGAGGAGAAGAAAGAAGAGA 1
1937 A/chicken/Egypt/111945V/ ( 1) GAGAAAAGAAGAAAAAAAAGA 1
1938 A/quail/Egypt/1171SG/201 ( 1) GAAAAAAGAAGAAAAAAGAGA 1
1939 //
1941 --------------------------------------------------------------------------------
1943 --------------------------------------------------------------------------------
1944 Motif 9 position-specific scoring matrix
1945 --------------------------------------------------------------------------------
1946 log-odds matrix: alength= 20 w= 21 n= 253 bayes= -2.07973 E= 8.0e-003
1947 -545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
1948 76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
1949 -341 -504 342 495 327 140 372 373 344 401 322 397 407 409 233 607 -458 447 143 240
1950 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1951 -65 -418 205 379 284 93 275 331 213 380 282 289 408 352 124 653 -382 481 51 155
1952 56 -16 216 469 430 -157 336 506 298 561 449 288 409 426 195 754 -314 673 153 254
1953 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1954 -545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
1955 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1956 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1957 -545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
1958 76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
1959 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1960 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1961 76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
1962 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1963 76 -302 209 459 418 -229 327 493 288 549 436 281 401 416 185 742 -324 660 142 244
1964 -247 -487 327 482 321 134 361 367 330 397 316 385 407 401 221 615 -444 453 131 230
1965 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1966 -545 -567 281 432 275 150 317 311 282 347 257 333 355 349 173 537 -526 381 92 187
1967 96 -416 114 344 312 -532 236 379 174 435 313 182 337 313 82 628 -427 535 49 150
1968 --------------------------------------------------------------------------------
1970 --------------------------------------------------------------------------------
1971 Motif 9 position-specific probability matrix
1972 --------------------------------------------------------------------------------
1973 letter-probability matrix: alength= 20 w= 21 nsites= 11 E= 8.0e-003
1974 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1975 0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1976 0.090909 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1977 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1978 0.363636 0.000000 0.000000 0.000000 0.000000 0.636364 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1979 0.727273 0.090909 0.000000 0.000000 0.000000 0.181818 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1980 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1981 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1982 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1983 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1984 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1985 0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1986 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1987 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1988 0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1989 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1990 0.909091 0.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1991 0.181818 0.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1992 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1993 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1994 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
1995 --------------------------------------------------------------------------------
1997 --------------------------------------------------------------------------------
1998 Motif 9 regular expression
1999 --------------------------------------------------------------------------------
2000 GAGA[GA]AAGAAGAAAAAAGAGA
2001 --------------------------------------------------------------------------------
2006 Time 61.66 secs.
2008 ********************************************************************************
2011 ********************************************************************************
2012 MOTIF 10 width = 15 sites = 3 llr = 65 E-value = 5.1e+001
2013 ********************************************************************************
2014 --------------------------------------------------------------------------------
2015 Motif 10 Description
2016 --------------------------------------------------------------------------------
2017 Simplified A :::::::a:::7:a:
2018 pos.-specific C ::::::::::::::a
2019 probability D :::::::::::::::
2020 matrix E :::::::::::::::
2021 F :::::::::::::::
2022 G aa::aa:::aa3:::
2023 H :::::::::::::::
2024 I :::::::::::::::
2025 K :::::::::::::::
2026 L :::::::::::::::
2027 M :::::::::::::::
2028 N :::::::::::::::
2029 P :::::::::::::::
2030 Q :::::::::::::::
2031 R :::::::::::::::
2032 S :::::::::::::::
2033 T ::aa::a:a:::a::
2034 V :::::::::::::::
2035 W :::::::::::::::
2036 Y :::::::::::::::
2038 bits 12.4
2039 11.1
2040 9.9
2041 8.7
2042 Relative 7.4
2043 Entropy 6.2
2044 (31.2 bits) 5.0
2045 3.7 *
2046 2.5 ** * * * *
2047 1.2 *********** ***
2048 0.0 ---------------
2050 Multilevel GGTTGGTATGGATAC
2051 consensus G
2052 sequence
2055 --------------------------------------------------------------------------------
2057 --------------------------------------------------------------------------------
2058 Motif 10 sites sorted by position p-value
2059 --------------------------------------------------------------------------------
2060 Sequence name Start P-value Site
2061 ------------- ----- --------- ---------------
2062 A/chicken/Anhui/T5/2006 1 6.50e-10 . GGTTGGTATGGATAC CATCAT
2063 A/chicken/Guiyang/821/20 7 6.50e-10 GTAGAT GGTTGGTATGGATAC
2064 A/chicken/Bangladesh/11V 7 1.21e-09 GTAGAT GGTTGGTATGGGTAC
2065 --------------------------------------------------------------------------------
2067 --------------------------------------------------------------------------------
2068 Motif 10 block diagrams
2069 --------------------------------------------------------------------------------
2070 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
2071 ------------- ---------------- -------------
2072 A/chicken/Anhui/T5/2006 6.5e-10 [10]_6
2073 A/chicken/Guiyang/821/20 6.5e-10 6_[10]
2074 A/chicken/Bangladesh/11V 1.2e-09 6_[10]
2075 --------------------------------------------------------------------------------
2077 --------------------------------------------------------------------------------
2078 Motif 10 in BLOCKS format
2079 --------------------------------------------------------------------------------
2080 BL MOTIF 10 width=15 seqs=3
2081 A/chicken/Anhui/T5/2006 ( 1) GGTTGGTATGGATAC 1
2082 A/chicken/Guiyang/821/20 ( 7) GGTTGGTATGGATAC 1
2083 A/chicken/Bangladesh/11V ( 7) GGTTGGTATGGGTAC 1
2084 //
2086 --------------------------------------------------------------------------------
2088 --------------------------------------------------------------------------------
2089 Motif 10 position-specific scoring matrix
2090 --------------------------------------------------------------------------------
2091 log-odds matrix: alength= 20 w= 15 n= 1771 bayes= 8.86125 E= 5.1e+001
2092 -450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
2093 -450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
2094 -429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
2095 -429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
2096 -450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
2097 -450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
2098 -429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
2099 67 -239 308 567 502 -366 417 591 390 637 517 367 485 508 275 804 -258 737 221 337
2100 -429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
2101 -450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
2102 -450 -477 373 526 362 141 405 405 375 437 349 427 440 442 263 632 -430 476 174 275
2103 31 -240 343 583 496 -86 438 574 411 626 512 409 518 531 291 812 -243 725 221 340
2104 -429 -346 336 539 479 -521 446 622 430 598 526 486 497 553 303 861 262 674 206 334
2105 67 -239 308 567 502 -366 417 591 390 637 517 367 485 508 275 804 -258 737 221 337
2106 -636 396 96 351 311 -752 242 415 143 423 318 152 274 281 81 405 -492 391 -15 125
2107 --------------------------------------------------------------------------------
2109 --------------------------------------------------------------------------------
2110 Motif 10 position-specific probability matrix
2111 --------------------------------------------------------------------------------
2112 letter-probability matrix: alength= 20 w= 15 nsites= 3 E= 5.1e+001
2113 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2114 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2115 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
2116 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
2117 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2118 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2119 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
2120 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2121 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
2122 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2123 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2124 0.666667 0.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2125 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000
2126 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2127 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
2128 --------------------------------------------------------------------------------
2130 --------------------------------------------------------------------------------
2131 Motif 10 regular expression
2132 --------------------------------------------------------------------------------
2133 GGTTGGTATGG[AG]TAC
2134 --------------------------------------------------------------------------------
2139 Time 62.43 secs.
2141 ********************************************************************************
2144 ********************************************************************************
2145 SUMMARY OF MOTIFS
2146 ********************************************************************************
2148 --------------------------------------------------------------------------------
2149 Combined block diagrams: non-overlapping sites with p-value < 0.0001
2150 --------------------------------------------------------------------------------
2151 SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
2152 ------------- ---------------- -------------
2153 A/chicken/Bangladesh/830 1.22e-03 [2(6.62e-06)]
2154 A/chicken/Egypt/39825/20 4.13e-03 6_[4(4.39e-07)]
2155 A/ck/Indonesia/072/10 3.16e-02 [2(2.31e-05)]
2156 A/duck/Bangladesh/5749/1 2.68e-07 2_[5(4.54e-08)]_5
2157 A/mallard/Crimea/245/200 3.86e-09 [1(6.48e-11)]
2158 A/environment/Bangladesh 1.25e-03 [4(4.39e-07)]_6
2159 A/chicken/Egypt/111945V/ 1.66e-03 [9(8.06e-07)]
2160 A/avian/New_York/Sg00372 7.47e-04 [3(3.23e-09)]_6
2161 A/chicken/Egypt/1117AF/2 1.30e-03 [9(3.30e-07)]
2162 A/wild_bird_feces/Cheons 1.32e-02 4_[5(5.98e-07)]_3
2163 A/chicken/India/241272/2 8.88e-03 [2(5.95e-06)]
2164 A/duck/Jiangxi/80/2005 2.00e-03 [2(2.08e-07)]
2165 A/chicken/Inhu/BPPVRII/2 5.07e-03 [2(1.32e-06)]
2166 A/duck/Guangxi/668/2004 3.93e-03 [2(1.67e-06)]
2167 A/whooper_swan/Hokkaido/ 5.48e-13 1_[7(1.62e-11)]_3
2168 A/duck/Vietnam/1/2010 8.68e-04 10_[8(8.62e-09)]
2169 A/avian/New_York/Sg00387 1.90e-04 3_[3(3.23e-09)]_3
2170 A/chicken/Cambodia/LC/20 3.04e-01 21
2171 A/mallard/Maryland/786/2 2.27e-09 4_[5(5.66e-09)]_3
2172 A/chicken/Egypt/128s/201 4.88e-08 1_[3(4.76e-09)]_5
2173 A/guinea_fowl/Yangon/834 2.87e-02 21
2174 A/chicken/WestJava/SmiAc 1.07e-02 [2(1.27e-05)]
2175 A/Indonesia/625/2006 1.65e-02 3_[4(1.47e-06)]_3
2176 A/Egypt/N07460/2012 5.29e-04 [9(9.07e-08)]
2177 A/duck/Victoria/26/1981| 1.14e-09 [1(1.29e-11)]
2178 A/duck/Viet_Nam/TG2401/2 9.09e-03 [2(6.33e-05)]
2179 A/chicken/Egypt/398252/2 1.21e-08 1_[5(5.66e-09)]_6
2180 A/environment/Maryland/1 2.37e-08 [1(3.01e-11)]
2181 A/duck/New_Zealand/41/19 3.43e-08 [1(6.33e-10)]
2182 A/heron/Cambodia/TM068/2 3.39e-03 [4(3.75e-07)]_6
2183 A/chicken/Egypt/10117/20 6.56e-08 [6(6.47e-12)]
2184 A/VietNam/HN31413/2008 3.48e-04 [4(1.21e-07)]_6
2185 A/chicken/Egypt/398214/2 4.80e-07 [6(2.63e-11)]
2186 A/chicken/Egypt/39823/20 6.21e-02 21
2187 A/chicken/Belgium/150VB/ 1.66e-08 [1(7.84e-10)]
2188 A/goose/Fujian/bb/2003 3.18e-03 [2(3.89e-07)]
2189 A/Vietnam/UT30259/2004 2.87e-03 [2(9.60e-06)]
2190 A/duck/Yunnan/47/2006 1.19e-02 [2(3.27e-06)]
2191 A/chicken/Egypt/10259SF/ 1.55e-03 [9(2.11e-07)]
2192 A/bird/Turkey/Unye_ist06 4.33e-03 [2(1.45e-06)]
2193 A/chicken/Bangladesh/11r 4.43e-08 4_[7(6.12e-10)]
2194 A/chicken/Vietnam/NCVD19 2.96e-04 [2(7.67e-08)]
2195 A/swan/England/AV3142149 8.58e-06 [1(5.93e-09)]
2196 A/chicken/Ibaraki/17/200 3.23e-08 [1(5.83e-11)]
2197 A/chicken/Nepal/354/2010 7.04e-03 3_[4(7.69e-07)]_3
2198 A/duck/Vietnam/NCVD366/2 1.04e-02 [2(3.27e-06)]
2199 A/duck/Korea/GJ54/2004|G 8.70e-02 4_[5(2.69e-06)]_3
2200 A/muscovy_duck/Vietnam/L 5.49e-03 [2(1.20e-06)]
2201 A/duck/Egypt/1130AG/2011 1.67e-03 [9(2.11e-07)]
2202 A/ck/Indonesia/091/10 6.76e-08 4_[7(4.14e-11)]
2203 A/duck/Vietnam/9/2010 8.80e-01 21
2204 A/duck/Hokkaido/Vac3/200 6.46e-09 [1(1.27e-10)]
2205 A/Thailand/WRAIR1720H/20 7.09e-03 [2(7.12e-07)]
2206 A/chicken/Cambodia/022LC 5.25e-01 21
2207 A/spurwinged_goose/Niger 1.87e-07 [1(2.89e-10)]
2208 A/pigeon/Egypt/SHAH5803/ 7.97e-04 [4(4.39e-07)]_6
2209 A/whooper_swan/Mongolia/ 1.74e-06 [1(5.15e-08)]
2210 A/chicken/Shan/2626/2007 7.31e-04 [2(1.84e-08)]
2211 A/chicken/Italy/367/97|A 5.38e-01 21
2212 A/turkey/Italy/1325/2005 6.19e-01 21
2213 A/chicken/Egypt/1158SF/2 1.23e-02 [2(2.10e-06)]
2214 A/chicken/Egypt/398220/2 2.97e-05 7_[5(5.66e-09)]
2215 A/condor/Guangdong/139/2 9.86e-03 [2(1.20e-06)]
2216 A/chicken/Shandong/A1/20 1.24e-03 [2(3.10e-07)]
2217 A/chicken/Egypt/11764s/2 2.76e-01 21
2218 A/swine/NorthSumatra/UT6 3.58e-03 [2(4.76e-07)]
2219 A/o.bill_stork/Thailand/ 2.66e-03 [2(2.53e-07)]
2220 A/chicken/Texas/2983132/ 1.39e-06 [1(5.19e-10)]
2221 A/chicken/Bangladesh/11V 1.24e-05 6_[10(1.21e-09)]
2222 A/chicken/Ibaraki/15/200 2.90e-08 [1(1.65e-10)]
2223 A/chicken/Shandong/A10/2 5.58e-03 [2(1.92e-06)]
2224 A/duck/Vietnam/OIE1287/2 4.98e-04 [2(3.14e-08)]
2225 A/duck/Vietnam/NCVD1161/ 1.05e-02 3_[4(4.39e-07)]_3
2226 A/duck/Ireland/113/1983| 7.45e-01 21
2227 A/chicken/EastKalimantan 5.24e-03 [2(4.76e-07)]
2228 A/duck/Vietnam/3/2010 2.10e-03 7_[8(3.40e-08)]_3
2229 A/Muscovy_duck/Ca_Mau/11 1.21e-02 [2(7.95e-07)]
2230 A/chicken/Turkey/Misinli 9.81e-14 1_[7(3.22e-11)]_3
2231 A/chicken/Italy/9097/199 6.24e-07 1_[5(3.92e-08)]_6
2232 A/mallard/Washington/456 7.87e-06 7_[5(4.78e-09)]
2233 A/duck/Iran/11VIR53161/2 6.67e-01 21
2234 A/Muscovy_Duck/Vietnam/1 1.77e-04 [4(2.36e-07)]_6
2235 A/duck/Hunan/149/2005 3.48e-06 [1(8.40e-09)]
2236 A/Egypt/4822NAMRU3/2009 2.66e-02 [2(4.03e-05)]
2237 A/duck/Vietnam/NCVD1463/ 3.24e-03 [2(1.92e-06)]
2238 A/poultry/Egypt/398256/2 1.80e-03 [4(6.25e-07)]_6
2239 A/turkey/Italy/1980|GQ24 2.83e-08 [6(7.65e-12)]
2240 A/goose/Bangladesh/11VIR 2.97e-01 21
2241 A/mallard/Washington/454 3.11e-09 [1(9.89e-12)]
2242 A/chicken/Cambodia/013LC 3.57e-11 6_[3(1.22e-09)]
2243 A/chicken/Banten/PdglKas 5.91e-03 [2(2.53e-07)]
2244 A/chicken/Vietnam/NCVD03 3.60e-01 21
2245 A/wigeon/Ohio/379/1988|C 1.02e-09 [1(2.82e-12)]
2246 A/chicken/Magelang/BBVW6 1.62e-03 [2(7.67e-08)]
2247 A/chicken/Lampung/BPPVRI 1.43e-02 [2(2.91e-06)]
2248 A/chick/Pennsylvania/1/1 6.69e-05 [1(2.05e-08)]
2249 A/chicken/Liaoning/A1/20 3.40e-03 [2(2.10e-06)]
2250 A/wild_bird_feces/Cheons 1.67e-13 6_[3(4.15e-11)]
2251 A/chicken/Sikkim/151466/ 9.38e-03 [2(6.62e-06)]
2252 A/environment/ChangSha/2 1.87e-03 [2(5.95e-06)]
2253 A/chicken/CentralJava/UT 2.46e-03 [2(2.60e-06)]
2254 A/Vietnam/HN36250/2010 1.88e-02 [2(1.51e-05)]
2255 A/chicken/Guiyang/821/20 1.39e-06 6_[10(6.50e-10)]
2256 A/owstons_civet/VietNam/ 9.57e-04 [2(8.77e-07)]
2257 A/chicken/Bangladesh/11r 3.28e-06 3_[3(8.33e-11)]_3
2258 A/environment/New_York/1 3.29e-10 [1(7.24e-13)]
2259 A/domestic_goose/Hong_Ko 1.50e-02 [2(8.76e-06)]
2260 A/Hubei/1/2010 3.24e-03 [2(1.92e-06)]
2261 A/Hunan/1/2009 1.76e-03 [2(3.93e-06)]
2262 A/chicken/Egypt/1123AL/2 8.11e-04 [9(1.20e-07)]
2263 A/wood_duck/MD/04623/200 8.07e-10 [1(9.89e-12)]
2264 A/chicken/Shanxi/2/2006 2.04e-02 21
2265 A/quail/Egypt/1171SG/201 1.40e-03 [9(1.34e-06)]
2266 A/duck/France/080036/200 7.54e-09 [1(8.17e-11)]
2267 A/chicken/Yangon/182/201 2.37e-03 [2(3.10e-07)]
2268 A/chicken/Scotland/59|X0 5.00e-06 [1(5.46e-09)]
2269 A/chicken/Sharkia/CAI41/ 1.52e-03 [2(1.04e-07)]
2270 A/mallard/Sweden/21/2002 2.50e-09 [1(2.67e-11)]
2271 A/environment/Bangladesh 7.64e-03 [2(5.95e-06)]
2272 A/chicken/Hebei/A8/2009 2.47e-03 [2(2.60e-06)]
2273 A/chicken/Egypt/11VIR445 1.66e-03 10_[8(1.63e-07)]
2274 A/duck/Guangxi/13/2004 3.67e-03 [2(9.60e-06)]
2275 A/duck/France/090043/200 4.42e-08 [1(2.89e-10)]
2276 A/chicken/Denpasar/BBVD1 2.21e-02 [2(3.61e-06)]
2277 A/Egypt/N6774/2011 6.32e-04 [9(5.02e-07)]
2278 A/parrot/CA/6032/04|DQ25 7.46e-08 [1(1.65e-10)]
2279 A/Cambodia/VN05103/2005 1.41e-01 21
2280 A_GenBank/heron/Cambodia 2.73e-03 6_[4(3.75e-07)]
2281 A/chicken/Bangladesh/11r 6.14e-05 7_[5(1.10e-08)]
2282 A/chicken/Tabanan/BBVD14 1.77e-03 [2(2.08e-07)]
2283 A/great_cormorant/Tibet/ 5.06e-05 [2(3.08e-09)]
2284 A/Egypt/321NAMRU3/2007 5.79e-03 [2(6.23e-07)]
2285 A/chicken/Egypt/10512AG/ 3.04e-02 [2(9.60e-06)]
2286 AHAH5_[11734;11734] 4.21e-37 [1(3.05e-19)]
2287 A/Egypt/9174NAMRU3/2009 5.33e-04 [9(3.52e-08)]
2288 A/Indonesia/NIHRD12379/2 4.50e-03 [2(6.23e-07)]
2289 A/chicken/Korea/ES/03 1.77e-02 [2(5.89e-05)]
2290 A/avian/New_York/Sg00377 1.75e-05 7_[5(5.66e-09)]
2291 A/chicken/Vietnam/NCVD09 2.29e-03 [2(4.40e-06)]
2292 A/Chicken/TurkeyMus/09rs 5.71e-08 4_[7(3.22e-11)]
2293 A/duck/Hong_Kong/312/197 6.18e-05 [3(8.33e-11)]_6
2294 A/Vietnam/UT3030/2003 6.22e-04 [2(5.58e-08)]
2295 A/crow/Bangladesh/11rs19 6.76e-02 21
2296 A/duck/Primorie/2633/200 3.16e-05 [3(4.15e-11)]_6
2297 A/Indonesia/UT3006/2005 7.23e-03 [2(3.89e-07)]
2298 A/duck/Qalubia/CAI11/201 5.33e-03 [2(3.89e-07)]
2299 A/green_winged_teal/Dela 2.40e-09 [1(5.44e-12)]
2300 A/chicken/Anhui/T5/2006 2.35e-05 [10(6.50e-10)]_6
2301 A/chicken/Puebla/8623607 9.01e-01 21
2302 A/duck/Guangxi/951/2005 4.60e-03 [2(5.43e-06)]
2303 A/chicken/Egypt/1219s/20 4.44e-11 4_[3(4.76e-09)]_2
2304 A/chicken/WestJava/SmiSu 1.15e-03 [9(4.74e-08)]
2305 A/chicken/Cambodia/TLC2/ 1.63e-05 3_[3(1.22e-09)]_3
2306 A/duck/France/05056a/200 1.22e-08 [1(4.65e-10)]
2307 A/Shandong/1/2009 2.38e-03 [2(2.34e-06)]
2308 A/chicken/Vietnam/NCVD40 5.75e-03 [2(3.27e-06)]
2309 A/chicken/Queretaro/7653 1.33e-02 3_[4(3.75e-07)]_3
2310 A/environment/Bangladesh 2.15e-03 [4(3.75e-07)]_6
2311 A/barn_swallow/Hong_Kong 1.05e-02 [2(2.31e-05)]
2312 A/duck/Primorie/2621/200 9.31e-08 1_[3(1.97e-08)]_5
2313 A/chicken/BacLieuVietnam 2.11e-03 3_[4(6.25e-07)]_3
2314 A_DISC/Cambodia/V0401301 8.39e-03 [2(2.91e-06)]
2315 A/bar_headed_goose/Mongo 9.64e-06 [1(2.05e-08)]
2316 A/chicken/Egypt/113Q/201 1.22e-02 [2(1.92e-06)]
2317 A/quail/Thanatpin/2283/2 4.14e-03 [2(6.62e-06)]
2318 A/chicken/Egypt/125s/201 1.53e-11 4_[5(5.66e-09)]_3
2319 A/duck/Hong_Kong/698/197 5.60e-09 [1(2.08e-11)]
2320 A/chicken/Egypt/209573/2 8.03e-01 21
2321 A/chicken/Indonesia/SmiW 3.08e-08 [6(5.44e-12)]
2322 A/turkey/Egypt/091QNLQP/ 7.34e-05 [3(8.33e-11)]_6
2323 A/duck/Egypt/1053/2010 2.54e-02 21
2324 A/Egypt/2786NAMRU3/2006 8.02e-04 6_[4(6.25e-07)]
2325 A/mallard/Netherlands/3/ 1.90e-06 3_[3(4.15e-11)]_3
2326 A/chicken/Bangladesh/11r 3.27e-05 [3(8.33e-11)]_6
2327 A/chicken/Liaoning/23/20 4.61e-03 [2(1.20e-06)]
2328 A/unknown/NY/98996/01|AY 2.75e-09 [1(1.88e-11)]
2329 A/tern/South_Africa/1961 5.03e-01 21
2330 A/chicken/Nepal/T1P/12 2.79e-03 [2(7.12e-07)]
2331 A/marabou_stork/Cambodia 2.36e-01 21
2332 A/chicken/Cambodia/67F1/ 1.19e-02 [2(2.10e-06)]
2333 A/gadwall/California/442 6.07e-10 [1(2.10e-12)]
2334 A/chicken/TanseMyanmar/S 5.35e-03 3_[4(6.25e-07)]_3
2335 A/duck/Cao_Bang/43/2007 5.78e-04 [2(5.46e-07)]
2336 A/chicken/Miyazaki/T10/2 2.84e-03 [2(1.67e-06)]
2337 A/whitefaced_whistling_d 7.41e-02 21
2338 A/muscovy_duck/Vietnam/N 5.05e-03 [2(6.23e-07)]
2339 A/Canada_goose/Alaska//4 2.31e-09 4_[5(4.78e-09)]_3
2340 A/chicken/Bangladesh/967 2.96e-03 [2(7.12e-07)]
2341 A/chicken/Egypt/11VIR445 6.80e-03 [2(1.92e-06)]
2342 A/Hong_Kong/7032/2012 1.26e-02 3_[4(4.39e-07)]_3
2343 A/chicken/Vietnam/945/20 5.75e-01 21
2344 A/ostrich/South_Africa/A 1.76e-05 3_[3(7.90e-10)]_3
2345 A/wild_bird/Wisconsin/43 1.40e-06 1_[5(5.66e-09)]_6
2346 A/spurwinged_goose/Niger 2.31e-02 [2(1.16e-05)]
2347 A/duck/Vietnam/NCVD1026/ 4.60e-03 [2(1.27e-05)]
2348 A/tern/South_Africa/1959 1.00e-06 3_[3(4.15e-11)]_3
2349 A/muscovy_duck/Jakarta/S 2.32e-03 [2(5.58e-08)]
2350 A/goose/Germany/R3160/09 2.01e-09 [1(4.14e-11)]
2351 A/turkey/Ontario/7732/19 7.44e-01 21
2352 A/chicken/Egypt/1090/201 1.64e-03 [9(6.98e-07)]
2353 A/mallard/Netherlands/2/ 5.96e-09 [1(5.83e-11)]
2354 A/chicken/Vietnam/NCVD18 3.46e-03 [2(1.27e-05)]
2355 A/chicken/Texas/1672804/ 1.67e-07 [1(3.63e-11)]
2356 A/duck/Italy/775/2004|CY 1.24e-09 [1(9.22e-11)]
2357 A/chicken/Bangladesh/FD( 2.17e-05 [3(4.15e-11)]_6
2358 A/chicken/Vietnam/NCVD40 1.17e-02 [2(1.66e-05)]
2359 A/swan/Hokkaido/67/1996| 1.62e-07 [1(2.49e-10)]
2360 A/chicken/Bangladesh/152 9.67e-04 [2(1.20e-06)]
2361 A/chicken/Bangladesh/11r 1.76e-01 21
2362 A/chicken/Indonesia/Suka 2.79e-01 21
2363 A/gull/Pennsylvania/4175 3.23e-07 [1(1.05e-09)]
2364 A/turkey/England/N28/73| 2.35e-08 1_[3(2.10e-08)]_5
2365 A/chicken/Badung/BBVD302 1.81e-03 [2(2.17e-07)]
2366 A/chicken/Bangladesh/11r 2.34e-03 [3(7.12e-09)]_6
2367 A/chicken/Yichang/lung1/ 8.73e-01 21
2368 A/avian/Missouri/4655937 9.68e-09 [1(1.88e-11)]
2369 A/turkey/TX/14082/1982_H 4.49e-09 [1(1.88e-11)]
2370 A/Cambodia/W0526301/2012 1.11e-02 [2(1.92e-06)]
2371 A/chicken/Vietnam/NCVD11 1.10e-02 3_[4(3.75e-07)]_3
2372 A/duck/Egypt/SHZA6605/20 6.64e-02 21
2373 A/chicken/Shandong/A5/20 8.69e-03 [2(7.33e-06)]
2374 A/chicken/VA/40018/1984_ 1.38e-04 [1(8.00e-08)]
2375 A/common_magpie/HongKong 3.92e-09 4_[7(1.62e-11)]
2376 A/shearwater/Australia/7 5.83e-09 [1(6.48e-11)]
2377 A/Chicken/TurkeyEdirne/0 2.06e-08 1_[5(1.90e-09)]_6
2378 A/goose/Guiyang/337/2006 7.92e-03 [2(7.95e-07)]
2379 A/chicken/Egypt/11VIR445 4.91e-01 21
2380 A/environment/Thailand/I 3.12e-03 [2(4.76e-07)]
2381 A/wild_bird_feces/Byeong 9.09e-06 3_[3(6.63e-10)]_3
2382 A/duck/Vietnam/NCVD422/2 1.28e-02 [2(1.96e-05)]
2383 A/chicken/Bhutan/4/10 9.80e-01 21
2384 A/turkey/MN/40550/1987_H 5.51e-03 4_[5(9.56e-07)]_3
2385 A/chicken/Egypt/1085/201 7.60e-03 [2(2.60e-06)]
2386 A/duck/France/06436/2006 4.96e-08 [1(8.65e-10)]
2387 A/HongKong/6841/2010 4.72e-01 21
2388 A/chicken/WestBengal/239 6.43e-03 [2(1.45e-06)]
2389 A/duck/Bac_Lieu/1213/200 1.71e-03 [2(9.16e-08)]
2390 A/cinnamon_teal/Californ 2.44e-09 [1(1.49e-11)]
2391 A/Muscovy_duck/France/07 1.85e-08 [1(1.05e-09)]
2392 A/chicken/Vietnam/4/2010 6.85e-04 1_[8(8.62e-09)]_9
2393 A/chicken/Vietnam/NCVD01 1.05e-02 [2(2.94e-05)]
2394 A/chicken/Puebla/1458665 1.71e-08 4_[5(1.20e-08)]_3
2395 A/Northern_shoveler/Utah 3.16e-10 [1(1.11e-12)]
2396 A/tundra_swan/Alaska//48 1.72e-09 [1(1.29e-11)]
2397 A/chicken/Sheny/0606/200 2.19e-03 [2(1.67e-06)]
2398 A/turkey/England/N28/73| 7.65e-01 21
2399 A/duck/Iran/VIR53161/201 9.31e-01 21
2400 A/chicken/Yangon/1023/20 3.00e-02 [2(2.51e-05)]
2401 A/chicken/Vietnam/5/2010 5.43e-04 4_[8(8.62e-09)]_6
2402 A/chicken/Hebei/326/2005 4.20e-03 [2(1.32e-06)]
2403 A/chicken/Bangladesh/150 3.10e-04 [2(3.10e-07)]
2404 A/wild_bird/Minnesota/46 2.06e-09 [1(4.20e-12)]
2405 A/chicken/India/81766/20 2.22e-03 [2(7.12e-07)]
2406 --------------------------------------------------------------------------------
2408 ********************************************************************************
2411 ********************************************************************************
2412 Stopped because nmotifs = 10 reached.
2413 ********************************************************************************
2415 CPU: bioteam52
2417 ********************************************************************************