| blob | c8d17fe8393568de3602e6e7bc939853f9a17630 |
1 LOCUS DDU63596 310 bp DNA INV 14-MAY-1999
2 DEFINITION Dictyostelium discoideum Tdd-4 transposable element flanking
3 sequence, clone p427/428 right end.
4 ACCESSION U63596
5 NID g2393749
6 KEYWORDS .
7 SOURCE Dictyostelium discoideum.
8 ORGANISM Dictyostelium discoideum
9 Eukaryota; Dictyosteliida; Dictyostelium.
10 REFERENCE 1 (bases 1 to 310)
11 AUTHORS Wells,D.J.
12 TITLE Tdd-4, a DNA transposon of Dictyostelium that encodes proteins
13 similar to LTR retroelement integrases
14 JOURNAL Nucleic Acids Res. 27 (11), 2408-2415 (1999)
15 REFERENCE 2 (bases 1 to 310)
16 AUTHORS Wells,D.J. and Welker,D.L.
17 TITLE Dictyostelium discoideum Tdd-4 transposable element, right end
18 flanking sequence from clone p427/428
19 JOURNAL Unpublished
20 REFERENCE 3 (bases 1 to 310)
21 AUTHORS Wells,D.J. and Welker,D.L.
22 TITLE Direct Submission
23 JOURNAL Submitted (11-JUL-1996) Biology, Utah State Univ., Logan, UT
24 84322-5305, USA
25 FEATURES Location/Qualifiers
26 source 1..310
27 /organism="Dictyostelium discoideum"
28 /strain="AX4"
29 /db_xref="taxon:44689"
30 /clone="p427/428"
31 misc_feature 5.12
32 /note="Fuzzy location"
33 misc_feature join(J00194:(100..202),1..245,256..258)
34 /note="Location partly in another entry"
35 BASE COUNT 118 a 46 c 67 g 79 t
36 //
37 LOCUS DDU63595 83 bp DNA INV 14-MAY-1999
38 DEFINITION Dictyostelium discoideum Tdd-4 transposable element flanking
39 sequence, clone p427/428 left end.
40 ACCESSION U63595
41 NID g2393748
42 KEYWORDS .
43 SOURCE Dictyostelium discoideum.
44 ORGANISM Dictyostelium discoideum
45 Eukaryota; Dictyosteliida; Dictyostelium.
46 REFERENCE 1 (bases 1 to 83)
47 AUTHORS Wells,D.J.
48 TITLE Tdd-4, a DNA transposon of Dictyostelium that encodes proteins
49 similar to LTR retroelement integrases
50 JOURNAL Nucleic Acids Res. 27 (11), 2408-2415 (1999)
51 REFERENCE 2 (bases 1 to 83)
52 AUTHORS Wells,D.J. and Welker,D.L.
53 TITLE Dictyostelium discoideum Tdd-4 transposable element, left end
54 flanking sequence from clone p427/428
55 JOURNAL Unpublished
56 REFERENCE 3 (bases 1 to 83)
57 AUTHORS Wells,D.J. and Welker,D.L.
58 TITLE Direct Submission
59 JOURNAL Submitted (11-JUL-1996) Biology, Utah State Univ., Logan, UT
60 84322-5305, USA
61 FEATURES Location/Qualifiers
62 source 1..83
63 /organism="Dictyostelium discoideum"
64 /strain="AX4"
65 /db_xref="taxon:44689"
66 /clone="p427/428"
67 BASE COUNT 31 a 16 c 12 g 24 t
68 //
69 LOCUS HUMBDNF 918 bp DNA PRI 31-OCT-1994
70 DEFINITION Human brain-derived neurotrophic factor (BDNF) gene, complete cds.
71 ACCESSION M37762
72 VERSION M37762.1 GI:179402
73 KEYWORDS neurotrophic factor.
74 SOURCE Human DNA.
75 ORGANISM Homo sapiens
76 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Mammalia;
77 Eutheria; Primates; Catarrhini; Hominidae; Homo.
78 REFERENCE 1 (bases 1 to 918)
79 AUTHORS Jones,K.R. and Reichardt,L.F.
80 TITLE Molecular cloning of a human gene that is a member of the nerve
81 growth factor family
82 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87 (20), 8060-8064 (1990)
83 MEDLINE 91045937
84 COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad.
85 Sci. U.S.A. (1990) In press] kindly submitted
86 by K.R.Jones, 13-AUG-1990.
87 FEATURES Location/Qualifiers
88 source 1..918
89 /organism="Homo sapiens"
90 /db_xref="taxon:9606"
91 /dev_stage="adult"
92 sig_peptide 76..123
93 /gene="NTF3"
94 /note="G00-125-917; putative"
95 /product="brain-derived neurotrophic factor"
96 CDS 76..819
97 /gene="BDNF"
98 /note="putative"
99 /codon_start=1
100 /db_xref="GDB:G00-125-916"
101 /product="brain-derived neurotrophic factor"
102 /protein_id="AAA51820.1"
103 /db_xref="GI:179403"
104 /translation="MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLE
105 SVNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPL
106 EPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMS
107 GGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRAL
108 TMDSKKRIGWRFIRIDTSCVCTLTIKRGR"
109 gene 76..816
110 /gene="NTF3"
111 /map="12p13"
112 gene 76..819
113 /gene="BDNF"
114 /map="11p13"
115 mat_peptide 124..816
116 /gene="NTF3"
117 /note="G00-125-917; putative"
118 /product="brain-derived neurotrophic factor"
119 BASE COUNT 269 a 192 c 237 g 220 t
120 //
121 LOCUS NT_010368 161485 bp DNA CON 16-NOV-2000
122 DEFINITION Homo sapiens chromosome 15 working draft sequence segment, complete
123 sequence.
124 ACCESSION NT_010368
125 VERSION NT_010368.1 GI:11433101
126 KEYWORDS HTG.
127 SOURCE human.
128 ORGANISM Homo sapiens
129 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
130 Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
131 REFERENCE 1 (bases 1 to 161485)
132 AUTHORS International Human Genome Project collaborators.
133 TITLE Toward the complete sequence of the human genome
134 JOURNAL Unpublished
135 COMMENT GENOME ANNOTATION REFSEQ: NCBI contigs are derived from assembled
136 genomic sequence data. They may include both draft and finished
137 sequence.
138 COMPLETENESS: not full length.
139 FEATURES Location/Qualifiers
140 source 1..310
141 /organism="Homo sapiens"
142 /db_xref="taxon:9606"
143 /chromosome="15"
144 source order(1..100,251..300,300..310)
145 /note="Doctored from Accession AC011224
146 sequenced by Whitehead Institute
147 for Biomedical Research"
148 /organism="Homo sapiens"
149 /db_xref="taxon:9606"
150 /clone="RP11-10K20"
151 variation 244
152 /replace="T"
153 /replace="A"
154 /db_xref="dbSNP:140670"
155 CONTIG AC011224.27:1..116977
156 //
157 LOCUS HUMBETGLOA 3002 bp DNA linear PRI 26-AUG-1994
158 DEFINITION Human haplotype C4 beta-globin gene, complete cds.
159 ACCESSION L26462
160 VERSION L26462.1 GI:432453
161 KEYWORDS beta-globin.
162 SOURCE Homo sapiens DNA.
163 ORGANISM Homo sapiens
164 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
165 Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo.
166 REFERENCE 1 (bases 1 to 3002)
167 AUTHORS Fullerton,S.M., Harding,R.M., Boyce,A.J. and Clegg,J.B.
168 TITLE Molecular and population genetic analysis of allelic sequence
169 diversity at the human beta-globin locus
170 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (5), 1805-1809 (1994)
171 MEDLINE 94173918
172 PUBMED 7907422
173 FEATURES Location/Qualifiers
174 source 1..3002
175 /organism="Homo sapiens"
176 /db_xref="taxon:9606"
177 /haplotype="C4"
178 /note="sequence found in a Melanesian population"
179 variation 111
180 /replace="t"
181 variation 263
182 /note="Rsa I polymorphism"
183 /replace="t"
184 variation 273
185 /replace="c"
186 variation 286..287
187 /note="2 bp insertion of AT"
188 /replace=""
189 variation 288
190 /replace="t"
191 variation 295..296
192 /note="1 bp deletion of C or 2 bp deletion of CT"
193 /replace=""
194 variation 347
195 /replace="c"
196 variation 476
197 /replace="t"
198 variation 500
199 /replace="c"
200 CDS join(866..957,1088..1310,2161..2289)
201 /codon_start=1
202 /product="beta-globin"
203 /protein_id="AAA21100.1"
204 /db_xref="GI:532506"
205 /translation="MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFE
206 SFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPE
207 NFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH"
208 exon <866..957
209 /number=1
210 variation 874
211 /replace="c"
212 intron 958..1087
213 /number=1
214 exon 1088..1310
215 /number=2
216 intron 1311..2160
217 /number=2
218 variation 1326
219 /note="Ava II polymorphism"
220 /replace="g"
221 variation 1384
222 /replace="g"
223 variation 1391
224 /replace="t"
225 variation 1976
226 /replace="t"
227 exon 2161..>2289
228 /number=3
229 variation 2522
230 /replace="c"
231 variation 2602
232 /replace="a"
233 variation 2604
234 /replace="c"
235 variation 2760
236 /note="Hinf I polymorphism"
237 /replace="t"
238 variation 2913
239 /replace="g"
240 BASE COUNT 810 a 601 c 599 g 992 t