t/data/test.interpro

   1 <?xml version="1.0" encoding="ISO-8859-1"?>
   2 <interpro_matches>
   3
   4    <protein id="AAA02489" length="1068" crc64="2BC49DB46BD50A75" >
   5         <interpro id="IPR002719" name="Retinoblastoma-associated protein, B-box" type="Domain" parent_id="IPR011028">
   6           <match id="PF01857" name="RB_B" dbname="PFAM">
   7             <location start="786" end="944" score="2.2e-111" status="T" evidence="HMMPfam" />
   8           </match>
   9         </interpro>
  10         <interpro id="IPR002720" name="Retinoblastoma-associated protein, A-box" type="Domain" parent_id="IPR011028">
  11           <match id="PF01858" name="RB_A" dbname="PFAM">
  12             <location start="385" end="578" score="2e-120" status="T" evidence="HMMPfam" />
  13           </match>
  14         </interpro>
  15         <interpro id="IPR006670" name="Cyclin" type="Domain" parent_id="IPR011028">
  16           <found_in>
  17             <rel_ref ipr_ref="IPR005258"/>
  18             <rel_ref ipr_ref="IPR000812"/>
  19          </found_in>
  20           <contains>
  21             <rel_ref ipr_ref="IPR006671"/>
  22           </contains>
  23           <match id="SM00385" name="CYCLIN" dbname="SMART">
  24             <location start="801" end="910" score="8.1e-06" status="T" evidence="HMMSmart" />
  25           </match>
  26         </interpro>
  27         <interpro id="IPR011028" name="Cyclin-like" type="Domain">
  28           <child_list>
  29             <rel_ref ipr_ref="IPR002719"/>
  30             <rel_ref ipr_ref="IPR002720"/>
  31             <rel_ref ipr_ref="IPR006670"/>
  32             <rel_ref ipr_ref="IPR006671"/>
  33             <rel_ref ipr_ref="IPR004367"/>
  34           </child_list>
  35           <found_in>
  36             <rel_ref ipr_ref="IPR005258"/>
  37             <rel_ref ipr_ref="IPR008721"/>
  38             <rel_ref ipr_ref="IPR004944"/>
  39             <rel_ref ipr_ref="IPR000812"/>
  40          </found_in>
  41           <match id="SSF47954" name="Cyclin-like" dbname="SUPERFAMILY">
  42             <location start="392" end="582" score="5.3e-69" status="T" evidence="superfamily" />
  43             <location start="786" end="969" score="1.2e-43" status="T" evidence="superfamily" />
  44             <location start="14" end="129" score="2.9e-05" status="T" evidence="superfamily" />
  45           </match>
  46         </interpro>
  47           <match id="seg" name="seg" dbname="SEG">
  48             <location start="8" end="20" status="?" evidence="Seg" />
  49             <location start="609" end="618" status="?" evidence="Seg" />
  50           </match>
  51    </protein>
  52    <protein id="AAA02501" length="2221" crc64="2281A7271A5F1BBD" >
  53         <interpro id="IPR001682" name="Ca2+/Na+ channel, pore region" type="Family" parent_id="IPR005820">
  54           <child_list>
  55             <rel_ref ipr_ref="IPR001696"/>
  56             <rel_ref ipr_ref="IPR002077"/>
  57           </child_list>
  58           <contains>
  59             <rel_ref ipr_ref="IPR002111"/>
  60           </contains>
  61           <match id="PS50273" name="CHANNEL_PORE_CA_NA" dbname="PROFILE">
  62             <location start="234" end="408" score="16.410" status="T" evidence="ProfileScan" />
  63             <location start="617" end="756" score="17.689" status="T" evidence="ProfileScan" />
  64             <location start="1015" end="1189" score="14.354" status="T" evidence="ProfileScan" />
  65             <location start="1374" end="1527" score="52.450" status="T" evidence="ProfileScan" />
  66           </match>
  67         </interpro>
  68         <interpro id="IPR002077" name="Ca2+ channel, alpha subunit" type="Family" parent_id="IPR001682">
  69           <child_list>
  70             <rel_ref ipr_ref="IPR005445"/>
  71             <rel_ref ipr_ref="IPR005446"/>
  72             <rel_ref ipr_ref="IPR005447"/>
  73             <rel_ref ipr_ref="IPR005448"/>
  74             <rel_ref ipr_ref="IPR005449"/>
  75           </child_list>
  76           <contains>
  77             <rel_ref ipr_ref="IPR002111"/>
  78           </contains>
  79           <match id="PR00167" name="CACHANNEL" dbname="PRINTS">
  80             <location start="255" end="270" score="9.3e-75" status="T" evidence="FPrintScan" />
  81             <location start="366" end="383" score="9.3e-75" status="T" evidence="FPrintScan" />
  82             <location start="405" end="429" score="9.3e-75" status="T" evidence="FPrintScan" />
  83             <location start="687" end="713" score="9.3e-75" status="T" evidence="FPrintScan" />
  84             <location start="1187" end="1207" score="9.3e-75" status="T" evidence="FPrintScan" />
  85             <location start="1397" end="1411" score="9.3e-75" status="T" evidence="FPrintScan" />
  86             <location start="1445" end="1457" score="9.3e-75" status="T" evidence="FPrintScan" />
  87           </match>
  88         </interpro>
  89         <interpro id="IPR002111" name="Cation (not K+) channel, TM region" type="Domain">
  90           <found_in>
  91             <rel_ref ipr_ref="IPR000434"/>
  92             <rel_ref ipr_ref="IPR002077"/>
  93             <rel_ref ipr_ref="IPR002153"/>
  94             <rel_ref ipr_ref="IPR005445"/>
  95             <rel_ref ipr_ref="IPR005446"/>
  96             <rel_ref ipr_ref="IPR005447"/>
  97             <rel_ref ipr_ref="IPR005448"/>
  98             <rel_ref ipr_ref="IPR005449"/>
  99             <rel_ref ipr_ref="IPR005450"/>
 100             <rel_ref ipr_ref="IPR005451"/>
 101             <rel_ref ipr_ref="IPR005452"/>
 102             <rel_ref ipr_ref="IPR005457"/>
 103             <rel_ref ipr_ref="IPR005458"/>
 104             <rel_ref ipr_ref="IPR005459"/>
 105             <rel_ref ipr_ref="IPR005461"/>
 106             <rel_ref ipr_ref="IPR005462"/>
 107             <rel_ref ipr_ref="IPR005463"/>
 108             <rel_ref ipr_ref="IPR008051"/>
 109             <rel_ref ipr_ref="IPR008052"/>
 110             <rel_ref ipr_ref="IPR008053"/>
 111             <rel_ref ipr_ref="IPR008054"/>
 112             <rel_ref ipr_ref="IPR005820"/>
 113             <rel_ref ipr_ref="IPR005821"/>
 114             <rel_ref ipr_ref="IPR003915"/>
 115             <rel_ref ipr_ref="IPR001682"/>
 116             <rel_ref ipr_ref="IPR001696"/>
 117             <rel_ref ipr_ref="IPR008344"/>
 118             <rel_ref ipr_ref="IPR008345"/>
 119             <rel_ref ipr_ref="IPR008346"/>
 120             <rel_ref ipr_ref="IPR008347"/>
 121          </found_in>
 122           <match id="PS50272" name="CATION_CHANNEL_TRPL" dbname="PROFILE">
 123             <location start="618" end="756" score="10.675" status="T" evidence="ProfileScan" />
 124             <location start="1310" end="1527" score="11.101" status="T" evidence="ProfileScan" />
 125           </match>
 126         </interpro>
 127         <interpro id="IPR005446" name="L-type voltage-dependent calcium channel alpha 1 subunit" type="Family" parent_id="IPR002077">
 128           <child_list>
 129             <rel_ref ipr_ref="IPR005450"/>
 130             <rel_ref ipr_ref="IPR005451"/>
 131             <rel_ref ipr_ref="IPR005452"/>
 132           </child_list>
 133           <contains>
 134             <rel_ref ipr_ref="IPR002111"/>
 135           </contains>
 136           <match id="PR01630" name="LVDCCALPHA1" dbname="PRINTS">
 137             <location start="152" end="170" score="4.2e-49" status="T" evidence="FPrintScan" />
 138             <location start="203" end="214" score="4.2e-49" status="T" evidence="FPrintScan" />
 139             <location start="414" end="427" score="4.2e-49" status="T" evidence="FPrintScan" />
 140             <location start="501" end="519" score="4.2e-49" status="T" evidence="FPrintScan" />
 141             <location start="590" end="605" score="4.2e-49" status="T" evidence="FPrintScan" />
 142             <location start="678" end="691" score="4.2e-49" status="T" evidence="FPrintScan" />
 143           </match>
 144         </interpro>
 145         <interpro id="IPR005451" name="L-type voltage-dependent calcium channel alpha 1C subunit" type="Family" parent_id="IPR005446">
 146           <contains>
 147             <rel_ref ipr_ref="IPR002111"/>
 148             <rel_ref ipr_ref="IPR010983"/>
 149           </contains>
 150           <match id="PR01635" name="LVDCCALPHA1C" dbname="PRINTS">
 151             <location start="17" end="32" score="3.6e-116" status="T" evidence="FPrintScan" />
 152             <location start="33" end="48" score="3.6e-116" status="T" evidence="FPrintScan" />
 153             <location start="64" end="80" score="3.6e-116" status="T" evidence="FPrintScan" />
 154             <location start="788" end="807" score="3.6e-116" status="T" evidence="FPrintScan" />
 155             <location start="808" end="827" score="3.6e-116" status="T" evidence="FPrintScan" />
 156             <location start="828" end="844" score="3.6e-116" status="T" evidence="FPrintScan" />
 157             <location start="1480" end="1494" score="3.6e-116" status="T" evidence="FPrintScan" />
 158             <location start="1727" end="1739" score="3.6e-116" status="T" evidence="FPrintScan" />
 159             <location start="1788" end="1806" score="3.6e-116" status="T" evidence="FPrintScan" />
 160             <location start="1807" end="1823" score="3.6e-116" status="T" evidence="FPrintScan" />
 161             <location start="1929" end="1949" score="3.6e-116" status="T" evidence="FPrintScan" />
 162             <location start="1994" end="2004" score="3.6e-116" status="T" evidence="FPrintScan" />
 163           </match>
 164         </interpro>
 165         <interpro id="IPR005820" name="Cation channel, non-ligand gated" type="Family" parent_id="IPR005821">
 166           <child_list>
 167             <rel_ref ipr_ref="IPR001682"/>
 168             <rel_ref ipr_ref="IPR003091"/>
 169           </child_list>
 170           <contains>
 171             <rel_ref ipr_ref="IPR001622"/>
 172             <rel_ref ipr_ref="IPR002111"/>
 173           </contains>
 174           <match id="PS50266" name="CATION_CHANNEL_TM" dbname="PROFILE">
 175             <location start="124" end="408" score="28.433" status="T" evidence="ProfileScan" />
 176             <location start="524" end="756" score="24.586" status="T" evidence="ProfileScan" />
 177             <location start="900" end="1189" score="26.324" status="T" evidence="ProfileScan" />
 178             <location start="1239" end="1527" score="30.008" status="T" evidence="ProfileScan" />
 179           </match>
 180         </interpro>
 181         <interpro id="IPR005821" name="Ion transport protein" type="Family">
 182           <child_list>
 183             <rel_ref ipr_ref="IPR004729"/>
 184             <rel_ref ipr_ref="IPR005820"/>
 185             <rel_ref ipr_ref="IPR003280"/>
 186           </child_list>
 187           <contains>
 188             <rel_ref ipr_ref="IPR001622"/>
 189             <rel_ref ipr_ref="IPR002110"/>
 190             <rel_ref ipr_ref="IPR002111"/>
 191           </contains>
 192           <match id="PF00520" name="Ion_trans" dbname="PFAM">
 193             <location start="158" end="404" score="1.2e-71" status="T" evidence="HMMPfam" />
 194             <location start="555" end="752" score="4.8e-58" status="T" evidence="HMMPfam" />
 195             <location start="952" end="1185" score="5.2e-66" status="T" evidence="HMMPfam" />
 196             <location start="1270" end="1523" score="1.8e-70" status="T" evidence="HMMPfam" />
 197           </match>
 198         </interpro>
 199         <interpro id="IPR010983" name="EF-Hand-like" type="Domain">
 200           <child_list>
 201             <rel_ref ipr_ref="IPR000261"/>
 202             <rel_ref ipr_ref="IPR001751"/>
 203             <rel_ref ipr_ref="IPR002048"/>
 204           </child_list>
 205           <found_in>
 206             <rel_ref ipr_ref="IPR005359"/>
 207             <rel_ref ipr_ref="IPR005451"/>
 208             <rel_ref ipr_ref="IPR007736"/>
 209             <rel_ref ipr_ref="IPR008080"/>
 210             <rel_ref ipr_ref="IPR003299"/>
 211             <rel_ref ipr_ref="IPR001125"/>
 212             <rel_ref ipr_ref="IPR001192"/>
 213             <rel_ref ipr_ref="IPR005176"/>
 214             <rel_ref ipr_ref="IPR003153"/>
 215          </found_in>
 216           <match id="SSF47473" name="EF-hand" dbname="SUPERFAMILY">
 217             <location start="1526" end="1670" score="3.6e-05" status="T" evidence="superfamily" />
 218           </match>
 219         </interpro>
 220           <match id="coil" name="coiled-coil" dbname="COIL">
 221             <location start="756" end="783" status="?" evidence="Coil" />
 222             <location start="1619" end="1640" status="?" evidence="Coil" />
 223           </match>
 224           <match id="seg" name="seg" dbname="SEG">
 225             <location start="26" end="39" status="?" evidence="Seg" />
 226             <location start="504" end="518" status="?" evidence="Seg" />
 227             <location start="635" end="648" status="?" evidence="Seg" />
 228             <location start="650" end="668" status="?" evidence="Seg" />
 229             <location start="767" end="777" status="?" evidence="Seg" />
 230             <location start="798" end="809" status="?" evidence="Seg" />
 231             <location start="838" end="857" status="?" evidence="Seg" />
 232             <location start="905" end="917" status="?" evidence="Seg" />
 233             <location start="994" end="1003" status="?" evidence="Seg" />
 234             <location start="1013" end="1027" status="?" evidence="Seg" />
 235             <location start="1162" end="1181" status="?" evidence="Seg" />
 236             <location start="1812" end="1822" status="?" evidence="Seg" />
 237             <location start="2027" end="2042" status="?" evidence="Seg" />
 238             <location start="2084" end="2093" status="?" evidence="Seg" />
 239           </match>
 240    </protein>
 241 </interpro_matches>