| blob | a35a5e1a173130b5175706b4553c7acf449dacce |
1 BioPerl Dependencies
3 NOTE : This file was auto-generated by the helper script
4 maintenance/dependencies.pl. Do not edit directly!
6 The following packages are used by BioPerl. While not all are required for
7 BioPerl to operate properly, some functionality will be missing without them.
8 You can easily choose to install all of these during the normal installation
9 process. Note that the PPM version of the BioPerl packages always tries to
10 install all dependencies.
12 The DBD::mysql, DB_File and XML::Parser modules require other applications or
13 databases: MySQL, Berkeley DB, and expat respectively.
15 NB: This list of packages is not authoritative. See the 'requires',
16 'build_requires' and 'recommends' sections of Build.PL instead.
18 ==============================================================================
19 | Distribution | Module used - Description | Min. ver. |
20 |---------------------------+--------------------------------------+-----------|
21 | AcePerl | * Ace - NA | None |
22 | | * Ace::Sequence::Homol - NA | |
23 |==============================================================================|
24 | Used by: |
25 |------------------------------------------------------------------------------|
26 | * Bio::DB::Ace - Ace |
27 | * Bio::DB::GFF::Adaptor::ace - Ace |
28 | * Bio::DB::GFF::Adaptor::dbi::mysqlace - Ace::Sequence::Homol |
29 | * Bio::DB::GFF::Adaptor::dbi::oracleace - Ace::Sequence::Homol |
30 ==============================================================================
31 ==============================================================================
32 | Distribution | Module used - Description | Min. ver. |
33 |---------------------------+--------------------------------------+-----------|
34 | Algorithm-Munkres | * Algorithm::Munkres - NA | None |
35 |==============================================================================|
36 | Used by: |
37 |------------------------------------------------------------------------------|
38 | * Bio::PhyloNetwork - Algorithm::Munkres |
39 ==============================================================================
40 ==============================================================================
41 | Distribution | Module used - Description | Min. ver. |
42 |---------------------------+--------------------------------------+-----------|
43 | Archive-Tar | * Archive::Tar - NA | None |
44 |==============================================================================|
45 | Used by: |
46 |------------------------------------------------------------------------------|
47 | * Bio::Root::Build - Archive::Tar |
48 ==============================================================================
49 ==============================================================================
50 | Distribution | Module used - Description | Min. ver. |
51 |---------------------------+--------------------------------------+-----------|
52 | Array-Compare | * Array::Compare - NA | None |
53 |==============================================================================|
54 | Used by: |
55 |------------------------------------------------------------------------------|
56 | * Bio::PhyloNetwork - Array::Compare |
57 ==============================================================================
58 ==============================================================================
59 | Distribution | Module used - Description | Min. ver. |
60 |---------------------------+--------------------------------------+-----------|
61 | Bio-ASN1-EntrezGene | * Bio::ASN1::EntrezGene - NA | None |
62 |==============================================================================|
63 | Used by: |
64 |------------------------------------------------------------------------------|
65 | * Bio::SeqIO::entrezgene - Bio::ASN1::EntrezGene |
66 ==============================================================================
67 ==============================================================================
68 | Distribution | Module used - Description | Min. ver. |
69 |---------------------------+--------------------------------------+-----------|
70 | Bio-FeatureIO | * Bio::SeqFeature::Annotated - NA | None |
71 |==============================================================================|
72 | Used by: |
73 |------------------------------------------------------------------------------|
74 | * Bio::Tools::Phylo::Gumby - Bio::SeqFeature::Annotated |
75 ==============================================================================
76 ==============================================================================
77 | Distribution | Module used - Description | Min. ver. |
78 |---------------------------+--------------------------------------+-----------|
79 | Bio-Graphics | * Bio::Graphics::Wiggle::Loader - NA | None |
80 |==============================================================================|
81 | Used by: |
82 |------------------------------------------------------------------------------|
83 | * Bio::DB::SeqFeature::Store::berkeleydb - Bio::Graphics::Wiggle::Loader |
84 ==============================================================================
85 ==============================================================================
86 | Distribution | Module used - Description | Min. ver. |
87 |---------------------------+--------------------------------------+-----------|
88 | Bio-Phylo | * Bio::Phylo - NA | None |
89 | | * Bio::Phylo::Factory - NA | |
90 | | * Bio::Phylo::Forest::Tree - NA | |
91 | | * Bio::Phylo::IO - NA | |
92 | | * Bio::Phylo::Matrices - NA | |
93 | | * Bio::Phylo::Matrices::Datum - NA | |
94 | | * Bio::Phylo::Matrices::Matrix - NA | |
95 |==============================================================================|
96 | Used by: |
97 |------------------------------------------------------------------------------|
98 | * Bio::Nexml::Factory - Bio::Phylo |
99 | * Bio::Nexml::Factory - Bio::Phylo::Factory |
100 | * Bio::Nexml::Factory - Bio::Phylo::Forest::Tree |
101 | * Bio::Nexml::Factory - Bio::Phylo::IO |
102 | * Bio::Nexml::Factory - Bio::Phylo::Matrices |
103 | * Bio::Nexml::Factory - Bio::Phylo::Matrices::Datum |
104 | * Bio::Nexml::Factory - Bio::Phylo::Matrices::Matrix |
105 ==============================================================================
106 ==============================================================================
107 | Distribution | Module used - Description | Min. ver. |
108 |---------------------------+--------------------------------------+-----------|
109 | Bio-SamTools | * Bio::DB::Sam - NA | None |
110 |==============================================================================|
111 | Used by: |
112 |------------------------------------------------------------------------------|
113 | * Bio::Assembly::IO::sam - Bio::DB::Sam |
114 ==============================================================================
115 ==============================================================================
116 | Distribution | Module used - Description | Min. ver. |
117 |---------------------------+--------------------------------------+-----------|
118 | BioPerl-Run | * Bio::Tools::Run::Bowtie - NA | None |
119 | | * Bio::Tools::Run::Samtools - NA | |
120 |==============================================================================|
121 | Used by: |
122 |------------------------------------------------------------------------------|
123 | * Bio::Assembly::IO::bowtie - Bio::Tools::Run::Bowtie |
124 | * Bio::Assembly::IO::bowtie - Bio::Tools::Run::Samtools |
125 ==============================================================================
126 ==============================================================================
127 | Distribution | Module used - Description | Min. ver. |
128 |---------------------------+--------------------------------------+-----------|
129 | Convert-Binary-C | * Convert::Binary::C - NA | None |
130 |==============================================================================|
131 | Used by: |
132 |------------------------------------------------------------------------------|
133 | * Bio::SeqIO::strider - Convert::Binary::C |
134 ==============================================================================
135 ==============================================================================
136 | Distribution | Module used - Description | Min. ver. |
137 |---------------------------+--------------------------------------+-----------|
138 | DBD-SQLite | * DBD::SQLite - NA | None |
139 |==============================================================================|
140 | Used by: |
141 |------------------------------------------------------------------------------|
142 | * Bio::DB::SeqFeature::Store::DBI::SQLite - DBD::SQLite |
143 ==============================================================================
144 ==============================================================================
145 | Distribution | Module used - Description | Min. ver. |
146 |---------------------------+--------------------------------------+-----------|
147 | DBI | * DBI - NA | None |
148 |==============================================================================|
149 | Used by: |
150 |------------------------------------------------------------------------------|
151 | * Bio::DB::GFF::Adaptor::dbi - DBI |
152 | * Bio::DB::GFF::Adaptor::dbi::caching_handle - DBI |
153 | * Bio::DB::SeqFeature::Store::DBI::mysql - DBI |
154 | * Bio::DB::SeqFeature::Store::DBI::Pg - DBI |
155 | * Bio::DB::Taxonomy::sqlite - DBI |
156 ==============================================================================
157 ==============================================================================
158 | Distribution | Module used - Description | Min. ver. |
159 |---------------------------+--------------------------------------+-----------|
160 | Data-Stag | * Data::Stag - NA | None |
161 | | * Data::Stag::XMLWriter - NA | |
162 |==============================================================================|
163 | Used by: |
164 |------------------------------------------------------------------------------|
165 | * Bio::Annotation::TagTree - Data::Stag |
166 | * Bio::SeqIO::chaosxml - Data::Stag::XMLWriter |
167 ==============================================================================
168 ==============================================================================
169 | Distribution | Module used - Description | Min. ver. |
170 |---------------------------+--------------------------------------+-----------|
171 | Digest-MD5 | * Digest::MD5 - NA | None |
172 |==============================================================================|
173 | Used by: |
174 |------------------------------------------------------------------------------|
175 | * Bio::DB::IndexedBase - Digest::MD5 |
176 ==============================================================================
177 ==============================================================================
178 | Distribution | Module used - Description | Min. ver. |
179 |---------------------------+--------------------------------------+-----------|
180 | Encode | * Encode - NA | None |
181 |==============================================================================|
182 | Used by: |
183 |------------------------------------------------------------------------------|
184 | * Bio::DB::SeqVersion::gi - Encode |
185 ==============================================================================
186 ==============================================================================
187 | Distribution | Module used - Description | Min. ver. |
188 |---------------------------+--------------------------------------+-----------|
189 | Error | * Error - NA | None |
190 |==============================================================================|
191 | Used by: |
192 |------------------------------------------------------------------------------|
193 | * Bio::Root::Root - Error |
194 ==============================================================================
195 ==============================================================================
196 | Distribution | Module used - Description | Min. ver. |
197 |---------------------------+--------------------------------------+-----------|
198 | GD | * GD - NA | None |
199 | | * GD::Simple - NA | |
200 |==============================================================================|
201 | Used by: |
202 |------------------------------------------------------------------------------|
203 | * Bio::Align::Graphics - GD |
204 | * Bio::Align::Graphics - GD::Simple |
205 ==============================================================================
206 ==============================================================================
207 | Distribution | Module used - Description | Min. ver. |
208 |---------------------------+--------------------------------------+-----------|
209 | Graph | * Graph::Directed - NA | None |
210 |==============================================================================|
211 | Used by: |
212 |------------------------------------------------------------------------------|
213 | * Bio::PhyloNetwork - Graph::Directed |
214 | * Bio::Ontology::SimpleGOEngine::GraphAdaptor - Graph::Directed |
215 ==============================================================================
216 ==============================================================================
217 | Distribution | Module used - Description | Min. ver. |
218 |---------------------------+--------------------------------------+-----------|
219 | HTML-Parser | * HTML::HeadParser - NA | None |
220 |==============================================================================|
221 | Used by: |
222 |------------------------------------------------------------------------------|
223 | * Bio::Tools::Analysis::DNA::ESEfinder - HTML::HeadParser |
224 | * Bio::Tools::Analysis::Protein::ELM - HTML::HeadParser |
225 ==============================================================================
226 ==============================================================================
227 | Distribution | Module used - Description | Min. ver. |
228 |---------------------------+--------------------------------------+-----------|
229 | HTML-TableExtract | * HTML::TableExtract - NA | None |
230 |==============================================================================|
231 | Used by: |
232 |------------------------------------------------------------------------------|
233 | * Bio::DB::SeqVersion::gi - HTML::TableExtract |
234 ==============================================================================
235 ==============================================================================
236 | Distribution | Module used - Description | Min. ver. |
237 |---------------------------+--------------------------------------+-----------|
238 | HTTP-Message | * HTTP::Request::Common - NA | None |
239 | | * HTTP::Response - NA | |
240 |==============================================================================|
241 | Used by: |
242 |------------------------------------------------------------------------------|
243 | * Bio::DB::DBFetch - HTTP::Request::Common |
244 | * Bio::DB::HIV - HTTP::Request::Common |
245 | * Bio::DB::NCBIHelper - HTTP::Request::Common |
246 | * Bio::DB::SwissProt - HTTP::Request::Common |
247 | * Bio::DB::WebDBSeqI - HTTP::Request::Common |
248 | * Bio::DB::Query::WebQuery - HTTP::Request::Common |
249 | * Bio::Tools::Run::RemoteBlast - HTTP::Request::Common |
250 | * Bio::DB::WebDBSeqI - HTTP::Response |
251 ==============================================================================
252 ==============================================================================
253 | Distribution | Module used - Description | Min. ver. |
254 |---------------------------+--------------------------------------+-----------|
255 | IO-Compress | * Compress::Zlib - NA | None |
256 | | * IO::Uncompress::Gunzip - NA | |
257 |==============================================================================|
258 | Used by: |
259 |------------------------------------------------------------------------------|
260 | * Bio::DB::SeqFeature::Store - Compress::Zlib |
261 | * Bio::Assembly::IO::bowtie - IO::Uncompress::Gunzip |
262 | * Bio::Assembly::IO::sam - IO::Uncompress::Gunzip |
263 ==============================================================================
264 ==============================================================================
265 | Distribution | Module used - Description | Min. ver. |
266 |---------------------------+--------------------------------------+-----------|
267 | IO-String | * IO::String - NA | None |
268 |==============================================================================|
269 | Used by: |
270 |------------------------------------------------------------------------------|
271 | * Bio::PhyloNetwork - IO::String |
272 | * Bio::DB::CUTG - IO::String |
273 | * Bio::DB::WebDBSeqI - IO::String |
274 | * Bio::Index::Blast - IO::String |
275 | * Bio::Index::BlastTable - IO::String |
276 | * Bio::Index::Hmmer - IO::String |
277 | * Bio::SeqIO::game::gameWriter - IO::String |
278 | * Bio::Tools::Analysis::DNA::ESEfinder - IO::String |
279 | * Bio::Tools::Analysis::Protein::Domcut - IO::String |
280 | * Bio::Tools::Analysis::Protein::ELM - IO::String |
281 | * Bio::Tools::Analysis::Protein::GOR4 - IO::String |
282 | * Bio::Tools::Analysis::Protein::HNN - IO::String |
283 | * Bio::Tools::Analysis::Protein::NetPhos - IO::String |
284 | * Bio::Tools::Analysis::Protein::Scansite - IO::String |
285 | * Bio::Tools::Analysis::Protein::Sopma - IO::String |
286 | * Bio::Tools::Phylo::Molphy - IO::String |
287 | * Bio::Tools::Phylo::PAML - IO::String |
288 | * Bio::Tools::Phylo::PAML::Codeml - IO::String |
289 | * Bio::Tools::Run::RemoteBlast - IO::String |
290 | * Bio::TreeIO::cluster - IO::String |
291 | * Bio::TreeIO::nexml - IO::String |
292 | * Bio::TreeIO::nexus - IO::String |
293 | * Bio::Variation::IO::xml - IO::String |
294 ==============================================================================
295 ==============================================================================
296 | Distribution | Module used - Description | Min. ver. |
297 |---------------------------+--------------------------------------+-----------|
298 | MIME-Base64 | * MIME::Base64 - NA | None |
299 |==============================================================================|
300 | Used by: |
301 |------------------------------------------------------------------------------|
302 | * Bio::DB::SeqFeature::Store::DBI::Pg - MIME::Base64 |
303 ==============================================================================
304 ==============================================================================
305 | Distribution | Module used - Description | Min. ver. |
306 |---------------------------+--------------------------------------+-----------|
307 | Memoize | * Memoize - NA | None |
308 |==============================================================================|
309 | Used by: |
310 |------------------------------------------------------------------------------|
311 | * Bio::DB::SeqFeature::Store::DBI::mysql - Memoize |
312 | * Bio::DB::SeqFeature::Store::DBI::Pg - Memoize |
313 | * Bio::DB::SeqFeature::Store::DBI::SQLite - Memoize |
314 ==============================================================================
315 ==============================================================================
316 | Distribution | Module used - Description | Min. ver. |
317 |---------------------------+--------------------------------------+-----------|
318 | Module-Build | * Module::Build - NA | None |
319 |==============================================================================|
320 | Used by: |
321 |------------------------------------------------------------------------------|
322 | * Bio::Root::Test - Module::Build |
323 ==============================================================================
324 ==============================================================================
325 | Distribution | Module used - Description | Min. ver. |
326 |---------------------------+--------------------------------------+-----------|
327 | PostScript | * PostScript::TextBlock - NA | None |
328 |==============================================================================|
329 | Used by: |
330 |------------------------------------------------------------------------------|
331 | * Bio::Tree::Draw::Cladogram - PostScript::TextBlock |
332 ==============================================================================
333 ==============================================================================
334 | Distribution | Module used - Description | Min. ver. |
335 |---------------------------+--------------------------------------+-----------|
336 | SVG | * SVG - NA | 2.26 |
337 |==============================================================================|
338 | Used by: |
339 |------------------------------------------------------------------------------|
340 | * Bio::Draw::Pictogram - SVG |
341 ==============================================================================
342 ==============================================================================
343 | Distribution | Module used - Description | Min. ver. |
344 |---------------------------+--------------------------------------+-----------|
345 | SVG-Graph | * SVG::Graph - NA | None |
346 | | * SVG::Graph::Data - NA | |
347 | | * SVG::Graph::Data::Node - NA | |
348 | | * SVG::Graph::Data::Tree - NA | |
349 |==============================================================================|
350 | Used by: |
351 |------------------------------------------------------------------------------|
352 | * Bio::TreeIO::svggraph - SVG::Graph |
353 | * Bio::TreeIO::svggraph - SVG::Graph::Data |
354 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Node |
355 | * Bio::TreeIO::svggraph - SVG::Graph::Data::Tree |
356 ==============================================================================
357 ==============================================================================
358 | Distribution | Module used - Description | Min. ver. |
359 |---------------------------+--------------------------------------+-----------|
360 | Set-Scalar | * Set::Scalar - NA | None |
361 |==============================================================================|
362 | Used by: |
363 |------------------------------------------------------------------------------|
364 | * Bio::Tree::Compatible - Set::Scalar |
365 ==============================================================================
366 ==============================================================================
367 | Distribution | Module used - Description | Min. ver. |
368 |---------------------------+--------------------------------------+-----------|
369 | Spreadsheet-ParseExcel | * Spreadsheet::ParseExcel - NA | None |
370 |==============================================================================|
371 | Used by: |
372 |------------------------------------------------------------------------------|
373 | * Bio::SeqIO::excel - Spreadsheet::ParseExcel |
374 ==============================================================================
375 ==============================================================================
376 | Distribution | Module used - Description | Min. ver. |
377 |---------------------------+--------------------------------------+-----------|
378 | Storable | * Storable - NA | None |
379 |==============================================================================|
380 | Used by: |
381 |------------------------------------------------------------------------------|
382 | * Bio::DB::SeqFeature::Store - Storable |
383 | * Bio::Restriction::Enzyme - Storable |
384 ==============================================================================
385 ==============================================================================
386 | Distribution | Module used - Description | Min. ver. |
387 |---------------------------+--------------------------------------+-----------|
388 | Test-Most | * Test::Most - NA | None |
389 |==============================================================================|
390 | Used by: |
391 |------------------------------------------------------------------------------|
392 | * Bio::Root::Test - Test::Most |
393 ==============================================================================
394 ==============================================================================
395 | Distribution | Module used - Description | Min. ver. |
396 |---------------------------+--------------------------------------+-----------|
397 | Test-Simple | * Test::Builder - NA | None |
398 | | * Test::Builder::Module - NA | |
399 |==============================================================================|
400 | Used by: |
401 |------------------------------------------------------------------------------|
402 | * Bio::Root::Test - Test::Builder |
403 | * Bio::Root::Test - Test::Builder::Module |
404 ==============================================================================
405 ==============================================================================
406 | Distribution | Module used - Description | Min. ver. |
407 |---------------------------+--------------------------------------+-----------|
408 | Tie-Cacher | * Tie::Cacher - NA | None |
409 |==============================================================================|
410 | Used by: |
411 |------------------------------------------------------------------------------|
412 | * Bio::DB::SeqFeature::Store - Tie::Cacher |
413 ==============================================================================
414 ==============================================================================
415 | Distribution | Module used - Description | Min. ver. |
416 |---------------------------+--------------------------------------+-----------|
417 | Time-HiRes | * Time::HiRes - NA | None |
418 |==============================================================================|
419 | Used by: |
420 |------------------------------------------------------------------------------|
421 | * Bio::DB::GenericWebAgent - Time::HiRes |
422 | * Bio::DB::SeqFeature::Store::Loader - Time::HiRes |
423 | * Bio::DB::SeqFeature::Store::DBI::mysql - Time::HiRes |
424 ==============================================================================
425 ==============================================================================
426 | Distribution | Module used - Description | Min. ver. |
427 |---------------------------+--------------------------------------+-----------|
428 | Tree-DAG_Node | * Tree::DAG_Node - NA | None |
429 |==============================================================================|
430 | Used by: |
431 |------------------------------------------------------------------------------|
432 | * Bio::TreeIO::svggraph - Tree::DAG_Node |
433 ==============================================================================
434 ==============================================================================
435 | Distribution | Module used - Description | Min. ver. |
436 |---------------------------+--------------------------------------+-----------|
437 | URI | * URI - NA | None |
438 | | * URI::Escape - NA | |
439 |==============================================================================|
440 | Used by: |
441 |------------------------------------------------------------------------------|
442 | * Bio::DB::NCBIHelper - URI |
443 | * Bio::DB::Query::WebQuery - URI |
444 | * Bio::DB::CUTG - URI::Escape |
445 ==============================================================================
446 ==============================================================================
447 | Distribution | Module used - Description | Min. ver. |
448 |---------------------------+--------------------------------------+-----------|
449 | WWW-Mechanize | * WWW::Mechanize - NA | None |
450 |==============================================================================|
451 | Used by: |
452 |------------------------------------------------------------------------------|
453 | * Bio::DB::MeSH - WWW::Mechanize |
454 ==============================================================================
455 ==============================================================================
456 | Distribution | Module used - Description | Min. ver. |
457 |---------------------------+--------------------------------------+-----------|
458 | Win32 | * Win32 - NA | None |
459 |==============================================================================|
460 | Used by: |
461 |------------------------------------------------------------------------------|
462 | * Bio::DB::GFF - Win32 |
463 | * Bio::DB::IndexedBase - Win32 |
464 | * Bio::Root::IO - Win32 |
465 ==============================================================================
466 ==============================================================================
467 | Distribution | Module used - Description | Min. ver. |
468 |---------------------------+--------------------------------------+-----------|
469 | XML-DOM | * XML::DOM - NA | None |
470 |==============================================================================|
471 | Used by: |
472 |------------------------------------------------------------------------------|
473 | * Bio::SeqIO::bsml - XML::DOM |
474 | * Bio::SeqIO::interpro - XML::DOM |
475 ==============================================================================
476 ==============================================================================
477 | Distribution | Module used - Description | Min. ver. |
478 |---------------------------+--------------------------------------+-----------|
479 | XML-DOM-XPath | * XML::DOM::XPath - NA | None |
480 |==============================================================================|
481 | Used by: |
482 |------------------------------------------------------------------------------|
483 | * Bio::SeqIO::interpro - XML::DOM::XPath |
484 ==============================================================================
485 ==============================================================================
486 | Distribution | Module used - Description | Min. ver. |
487 |---------------------------+--------------------------------------+-----------|
488 | XML-LibXML | * XML::LibXML - NA | None |
489 | | * XML::LibXML::Reader - NA | |
490 |==============================================================================|
491 | Used by: |
492 |------------------------------------------------------------------------------|
493 | * Bio::SeqIO::seqxml - XML::LibXML |
494 | * Bio::TreeIO::phyloxml - XML::LibXML |
495 | * Bio::SeqIO::seqxml - XML::LibXML::Reader |
496 | * Bio::TreeIO::phyloxml - XML::LibXML::Reader |
497 ==============================================================================
498 ==============================================================================
499 | Distribution | Module used - Description | Min. ver. |
500 |---------------------------+--------------------------------------+-----------|
501 | XML-SAX | * XML::SAX - NA | None |
502 |==============================================================================|
503 | Used by: |
504 |------------------------------------------------------------------------------|
505 | * Bio::ClusterIO::dbsnp - XML::SAX |
506 | * Bio::SeqIO::bsml_sax - XML::SAX |
507 | * Bio::SeqIO::gbxml - XML::SAX |
508 | * Bio::SeqIO::tigrxml - XML::SAX |
509 ==============================================================================
510 ==============================================================================
511 | Distribution | Module used - Description | Min. ver. |
512 |---------------------------+--------------------------------------+-----------|
513 | XML-SAX-Writer | * XML::SAX::Writer - NA | None |
514 |==============================================================================|
515 | Used by: |
516 |------------------------------------------------------------------------------|
517 | * Bio::SeqIO::tigrxml - XML::SAX::Writer |
518 ==============================================================================
519 ==============================================================================
520 | Distribution | Module used - Description | Min. ver. |
521 |---------------------------+--------------------------------------+-----------|
522 | XML-Simple | * XML::Simple - NA | None |
523 |==============================================================================|
524 | Used by: |
525 |------------------------------------------------------------------------------|
526 | * Bio::DB::HIV::HIVQueryHelper - XML::Simple |
527 | * Bio::DB::Query::HIVQuery - XML::Simple |
528 ==============================================================================
529 ==============================================================================
530 | Distribution | Module used - Description | Min. ver. |
531 |---------------------------+--------------------------------------+-----------|
532 | XML-Twig | * XML::Twig - NA | None |
533 |==============================================================================|
534 | Used by: |
535 |------------------------------------------------------------------------------|
536 | * Bio::DB::Taxonomy::entrez - XML::Twig |
537 | * Bio::Variation::IO::xml - XML::Twig |
538 ==============================================================================
539 ==============================================================================
540 | Distribution | Module used - Description | Min. ver. |
541 |---------------------------+--------------------------------------+-----------|
542 | XML-Writer | * XML::Writer - NA | 0.4 |
543 |==============================================================================|
544 | Used by: |
545 |------------------------------------------------------------------------------|
546 | * Bio::SeqIO::agave - XML::Writer |
547 | * Bio::SeqIO::chadoxml - XML::Writer |
548 | * Bio::SeqIO::seqxml - XML::Writer |
549 | * Bio::SeqIO::tinyseq - XML::Writer |
550 | * Bio::SeqIO::game::gameWriter - XML::Writer |
551 | * Bio::Variation::IO::xml - XML::Writer |
552 ==============================================================================
553 ==============================================================================
554 | Distribution | Module used - Description | Min. ver. |
555 |---------------------------+--------------------------------------+-----------|
556 | libwww-perl | * LWP - NA | 5.64 |
557 | | * LWP::UserAgent - NA | |
558 |==============================================================================|
559 | Used by: |
560 |------------------------------------------------------------------------------|
561 | * Bio::Tools::Protparam - LWP |
562 | * Bio::Tools::Run::RemoteBlast - LWP |
563 | * Bio::DB::GenericWebAgent - LWP::UserAgent |
564 | * Bio::DB::MeSH - LWP::UserAgent |
565 | * Bio::DB::WebDBSeqI - LWP::UserAgent |
566 | * Bio::DB::Query::WebQuery - LWP::UserAgent |
567 | * Bio::Root::Build - LWP::UserAgent |
568 | * Bio::Root::IO - LWP::UserAgent |
569 ==============================================================================
570 ==============================================================================
571 | Distribution | Module used - Description | Min. ver. |
572 |---------------------------+--------------------------------------+-----------|
573 | libxml-perl | * XML::Parser::PerlSAX - NA | None |
574 |==============================================================================|
575 | Used by: |
576 |------------------------------------------------------------------------------|
577 | * Bio::OntologyIO::InterProParser - XML::Parser::PerlSAX |
578 | * Bio::SeqIO::tinyseq - XML::Parser::PerlSAX |
579 | * Bio::SeqIO::game::gameSubs - XML::Parser::PerlSAX |
580 ==============================================================================
581 ==============================================================================
582 | Distribution | Module used - Description | Min. ver. |
583 |---------------------------+--------------------------------------+-----------|
584 | mod_perl | * Apache2::SubProcess - NA | None |
585 |==============================================================================|
586 | Used by: |
587 |------------------------------------------------------------------------------|
588 | * Bio::DB::WebDBSeqI - Apache2::SubProcess |
589 ==============================================================================
590 ==============================================================================
591 | Distribution | Module used - Description | Min. ver. |
592 |---------------------------+--------------------------------------+-----------|
593 | version | * version - NA | None |
594 |==============================================================================|
595 | Used by: |
596 |------------------------------------------------------------------------------|
597 | * Bio::SeqIO::mbsout - version |
598 | * Bio::SeqIO::msout - version |
599 ==============================================================================