t/data/AF222649-rc.gbk

   1 LOCUS       AF222649rc              1659 bp    RNA     linear   VRL 10-JAN-2001
   2 DEFINITION  Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2)) segment 3 PA
   3             (PA) gene, partial cds.
   4 ACCESSION   AF222649rc
   5 VERSION     AF222649rc.1
   6 KEYWORDS    .
   7 SOURCE      Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2))
   8   ORGANISM  Influenza A virus (A/Quail/Hong Kong/NT28/99(H9N2))
   9             Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
  10             Influenzavirus A.
  11 REFERENCE   1  (bases 1 to 1659)
  12   AUTHORS   Guan,Y., Shortridge,K.F., Krauss,S., Chin,P.S., Dyrting,K.C.,
  13             Ellis,T.M., Webster,R.G. and Peiris,M.
  14   TITLE     H9N2 influenza viruses possessing H5N1-like internal genomes
  15             continue to circulate in poultry in southeastern China
  16   JOURNAL   J. Virol. 74 (20), 9372-9380 (2000)
  17    PUBMED   11000205
  18 REFERENCE   2  (bases 1 to 1659)
  19   AUTHORS   Guan,Y., Krauss,S., Webster,R.G. and Shortridge,K.F.
  20   TITLE     Direct Submission
  21   JOURNAL   Submitted (10-JAN-2000) Virology and Molecular Biology, St. Jude
  22             Children's Research Hospital, 332 N. Lauderdale, Memphis, TN 38105,
  23             USA
  24 FEATURES             Location/Qualifiers
  25      source          complement(1..1659)
  26                      /organism="Influenza A virus (A/Quail/Hong
  27                      Kong/NT28/99(H9N2))"
  28                      /mol_type="genomic RNA"
  29                      /strain="A/Quail/Hong Kong/NT28/99(H9N2)"
  30                      /db_xref="taxon:109241"
  31                      /segment="3"
  32      gene            complement(1..1653)
  33                      /gene="PA"
  34      CDS             complement(1..1653)
  35                      /gene="PA"
  36                      /codon_start=1
  37                      /product="PA"
  38                      /protein_id="AAG48207.1"
  39                      /db_xref="GI:12060686"
  40                      /translation="MEDFVRQCFSPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEV
  41                      CFMYSDFHFIDERGESIIVEFGDPNVLLKHRFEIIEGRDRTMAWTVVNSICNTTGVEK
  42                      PKYLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSERTHIHIFSFTGEEMATKAD
  43                      YTLDEESRARIKTRLFTIRQELASRGLWDSFRQSERGEETIEERFEITGTMRRLADQS
  44                      LPPNFSSLENFRAYVDGFEPNGCIEGKLSQMSKEVTARIEPFLKTTPRPLKLPDGPPC
  45                      SQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIIKPHEKGINPNY
  46                      LLAWKQVLAELQDIENDEKIPKTKNMKKTSQLKWALGENMAPEKVDFEDCKDVGDLKQ
  47                      YDSDEPELKSLASWIQSEFNKACELTDSSWVELDEIGEDVAPIEHIASMRRNYFTAEV
  48                      SHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMVSKCRTKEGRRKTNLYGFIIKGR
  49                      SHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEVGDMLLR"
  50      misc_feature    complement(4..1593)
  51                      /gene="PA"
  52                      /note="Influenza RNA-dependent RNA polymerase subunit PA;
  53                      Region: Flu_PA; pfam00603"
  54                      /db_xref="CDD:144261"
  55      gene            complement(join(1081..1653,894..1079))
  56                      /gene="PA-X"
  57      CDS             complement(join(1081..1653,894..1079))
  58                      /gene="PA-X"
  59                      /product="PA-X"
  60                      /codon_start=1
  61 BASE COUNT      374 a    412 c    312 g    561 t
  62 ORIGIN
  63         1 tctcaggagc atgtccccta cttcaagaac acagtacttc tcccacttgt gtggctccaa
  64        61 tctcgggtct gtaagagaaa attccatgct cacaaagttt accacatcag tatcattcct
  65       121 caaatgggac cttcccttga taatgaaccc atacaggttt gttttccgtc tcccttcttt
  66       181 tgttctgcat ttgcttacca ttgggatcaa ttggaagtca tccatggctg cacaagatgc
  67       241 attgagcaac gctgtattga tatacactcc cttcattata tactcagtag cccggcaatg
  68       301 tgacacttct gctgtgaagt aattccttct catactcgca atgtgctcga ttggggcaac
  69       361 atcttctcct atttcatcaa gttctaccca gcttgaatcg gtcagttcac atgccttgtt
  70       421 aaattcactc tggatccaac ttgctagcga tttgagctct ggttcatcac tatcatattg
  71       481 tttcaggtca ccaacgtctt tgcagtcctc aaagtccact ttctccggtg ccatattctc
  72       541 acctaatgcc cattttaatt ggcttgtttt cttcatgttc ttcgtttttg ggatcttttc
  73       601 atcattttca atgtcctgga gctctgccag cacctgcttc caagctaaga gataatttgg
  74       661 gtttataccc ttctcatgtg gtttgataat tttgggctct ttccagccga aaaatgtttt
  75       721 catgcatttg atcgcatcat acagcggtat cccctctccc tcatgactcg ggtcctcaat
  76       781 gcttaatttc aaagcatcca tcagtaagaa ttttgacctt tgggaacagg gaggtccatc
  77       841 aggcaatttt agaggacgtg gtgttgtttt aagaaagggc tcaattctgg ccgttacctc
  78       901 ttttgacatc tgagaaagct tgccctcaat gcagccgttc ggttcgaatc catccacata
  79       961 ggctctaaag ttttcaaggc tggagaaatt cggtgggaga ctttggtcgg caagcctgcg
  80      1021 cattgttcct gtgatttcaa atctttcttc aattgtctct tcgcctctct cggactgacg
  81      1081 aaaggaatcc catagacccc tgctagccag ttcctgtctt atggtgaaca gcctagtttt
  82      1141 gatccttgcc ctgctctctt catcaagggt atagtccgcc ttggtggcca tttcttcccc
  83      1201 agtaaatgaa aagatgtgaa tgtgtgttct ctcggatttt atcttgttgg ccttttctag
  84      1261 atagtatatg tgcacttccc tccgtgtcac tccaatctca atgaatcgat tctccttgta
  85      1321 atcatacaga tctggaaggt atttaggttt ttcgactccc gtagtgttac agatgctatt
  86      1381 cactactgtc catgccattg ttcggtctct tccttcaatt atttcaaatc ggtgtttcaa
  87      1441 taacacattt ggatcaccaa attccacaat tattgattcg cctctttcgt caatgaagtg
  88      1501 gaaatctgaa tacatgaagc agacttccag atgagtgcat attgccgcaa acttgttcgt
  89      1561 ttcgattttc gggtcttccc cgtactcttt cattgccttt tccgcaagct cgacgatcat
  90      1621 tgggctgaag cattgtcgca caaagtcttc cattttgaa
  91 //