Bring base classes from BioPerl-run back to BioPerl.
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1 LOCUS       Mc.janrrnA   1475 bp    RNA             RNA       09-NOV-1998
2 DEFINITION  Methanococcus jannaschii [gene=rrnA gene].
3 REFERENCE   1
4   AUTHORS   Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D.,
5             Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A.,
6             Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J., Adams,M.D.,
7             Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G.,
8             Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F.,
9             Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M.,
10             Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M.D., Hurst,M.A.,
11             Roberts,K.M., Kaine,B.P., Borodovsky,M., Klenk,H.P., Fraser,C.M.,
12             Smith,H.O., Woese,C.R. and Venter,J.C.
13   TITLE     Complete genome sequence of the methanogenic archaeon,
14             Methanococcus jannaschii
15   JOURNAL   Science 273 (5278), 1058-1073 (1996)
16 COMMENT     
17             Corresponding GenBank entry: L77117 (bases 157985 to 159459)
18               complement
19             operon= rrnA gene
20 BASE COUNT      295 a    422 c    527 g    231 u   2746 others
21 ORIGIN
22         1 AUUCCGGUUG AUCCUGCCGG AGGCCACUGC UAUCGGGGUC CGACUAAGCC AUGCGAGUCA
23        61 AGGGGCUCCC UUCGGGGAGC ACCGGCGCAC GGCUCAGUAA CACGUGGCUA ACCUACCCUC
24       121 GGGUGGGGGA UAACCUCGGG AAACUGAGGC UAAUCCCCCA UAGGGGAGGA GGUCUGGAAU
25       181 GAUCCCUCCC CGAAAGGCGU AAGCUGCCCG AGGAUGGGGC UGCGGCGGAU UAGGUAGUUG
26       241 GUGGGGUAAC GGCCCACCAA GCCUACGAUC CGUACGGGCC CUGAGAGGGG GAGCCCGGAG
27       301 AUGGACACUG AGACACGGGU CCAGGCCUAC GGGGCGCAGC AGGCGCGAAA CCUCCGCAAU
28       361 GCGCGAAAGC GCGACGGGGG GACCCCGAGU GCCCACGCCC UGCGUGGGCU UUUCCGGAGU
29       421 GUAAACAGCU CCGGGAAUAA GGGCUGGGCA AGUCCGGUGC CAGCAGCCGC GGUAAUACCG
30       481 GCGGCCCAAG UGGUGGCCAC UGUUAUUGGG CCUAAAGCGU CCGUAGCCGG CCCGGUAAGU
31       541 CUCUGCUUAA AUCUGCGGCU CAACCGCAGG GCUGGCAGAG AUACUGCCGG GCUUGGGACC
32       601 GGGAGAGGCC GGGGGUACCC CAGGGGUAGC GGUGAAAUGC GUUGAUCCCU GGGGGACCAC
33       661 CUGUGGCGAA GGCGCCCGGC UGGAACGGGU CCGACGGUGA GGGACGAAGG CCAGGGGAGC
34       721 AAACCGGAUU AGAUACCCGG GUAGUCCUGG CUGUAAACUC UGCGGACUAG GUGUCGCGUC
35       781 GGCUUCGGGC CGACGCGGUG CCGAAGGGAA GCCGUUAAGU CCGCCGCCUG GGGAGUACGG
36       841 UCGCAAGACU GAAACUUAAA GGAAUUGGCG GGGGAGCACU ACAACGGGUG GAGCCUGCGG
37       901 UUUAAUUGGA UUCAACGCCG GGCAUCUUAC CAGGGGCGAC GGCAGGAUGA AGGCCAGGUU
38       961 GACGACCUUG CCAGACGCGC CGAGAGGUGG UGCAUGGCCG UCGUCAGCUC GUACCGUGAG
39      1021 GCGUCCUGUU AAGUCAGGUA ACGAGCGAGA CCCGUGCCCC AUGUUGCUAC CUCCUCCUCC
40      1081 GGGAGGAGGG CACUCAUGGG GGACCGCCGG CGCUAAGCCG GAGGAAGGUG CGGGCAACGA
41      1141 CAGGUCCGCA UGCCCCGAAU CCCCUGGGCU ACACGCGGGC UACAAUGGCC GGGACAAUGG
42      1201 GACGCGACCC CGAAAGGGGG AGCGAAUCCC CUAAACCCGG UCGUAGUCCG GAUCGAGGGC
43      1261 UGUAACUCGC CCUCGUGAAG CCGGAAUCCG UAGUAAUCGC GCCUCACCAU GGCGCGGUGA
44      1321 AUGCGUCCCU GCUCCUUGCA CACACCGCCC GUCACGCCAC CCGAGUUGAG CCCAAGUGAG
45      1381 GCCCUGUCCG CAAGGGCAGG GUCGAACUUG GGUUCAGCGA GGGGGGCGAA GUCGUAACAA
46      1441 GGUAGCCGUA GGGGAACUGC GGCUGGAUCA CCUCC