t/data/contig-by-hand.wublastp

   1 BLASTP 2.0MP-WashU [12-Feb-2001] [linux-i686 01:36:08 31-Jan-2001]
   2
   3 Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA.
   4 All Rights Reserved.
   5
   6 Reference:  Gish, W. (1996-2000) http://blast.wustl.edu
   7
   8 Query=  gi|1786183|gb|AAC73113.1| (AE000111) aspartokinase I, homoserine
   9     dehydrogenase I [Escherichia coli]
  10         (820 letters)
  11
  12 Database:  ecoli.aa
  13            4289 sequences; 1,358,990 total letters.
  14 Searching....10....20....30....40....50....60....70....80....90....100% done
  15
  16                                                                      Smallest
  17                                                                        Sum
  18                                                               High  Probability
  19 Sequences producing High-scoring Segment Pairs:              Score  P(N)      N
  20
  21 gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand)    999  0.0e-00   1
  22
  23
  24
  25 >gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand)
  26
  27         Length = 810
  28
  29  Score = 999 (999.9 bits), Expect = 0.0e-00, P = 0.0e-00
  30  Identities = 250/810 (31%), Positives = 413/810 (51%)
  31
  32
  33 Query:     5 KFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNI 64
  34              KFGG+S+A+ + +LRVA I+   ++   +  V+SA    TN L+  ++ + + + +   +
  35 Sbjct:    16 KFGGSSLADVKCYLRVAGIMAEYSQPDDMM-VVSAAGSTTNQLINWLKLSQTDRLSAHQV 74
  36
  37 Query:    65 SDAERIF-AELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLH-GISLLGQCPDSINAAL 122
  38                  R +  +L++GL  A+    L  +  FV  +  ++  +L  GI+      D++ A +
  39 Sbjct:    75 QQTLRRYQCDLISGLLPAEEADSL--ISAFVS-DLERLAALLDSGIN------DAVYAEV 125
  40
  41 Query:   123 ICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRI--P 180
  42              +  GE  S  +M+ VL  +G     +D  E L A     +  VD   S   +    +  P
  43 Sbjct:   126 VGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE-RAAQPQVDEGLSYPLLQQLLVQHP 184
  44
  45 Query:   181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240
  46                 +V+  GF + N  GE V+LGRNGSDYSA  + A        IW+DV GVY+ DPR+V
  47 Sbjct:   185 GKRLVV-TGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKV 243
  48
  49 Query:   241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300
  50               DA LL  +   EA EL+   A VLH RT+ P++  +I   ++ +  P    T I
  51 Sbjct:   244 KDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLA 303
  52
  53 Query:   301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360
  54                    + +++ +++ +     P  +        +   + RA++  + +   +    + F
  55 Sbjct:   304 SGT-GARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLLQF 362
  56
  57 Query:   361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGIS 413
  58              C        A + + E        GL   L + + LA++++VG G+ T   +
  59 Sbjct:   363 CYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGV-TRNPLH 407
  60
  61 Query:   414 A-KFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIG 472
  62                +F+  L    +      Q     S+  V+      + ++  HQ +F  ++ I + + G
  63 Sbjct:   408 CHRFWQQLKGQPVEFTW--QSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFG 465
  64
  65 Query:   473 VGGVGGALLEQLKRQQSWLKNKH-IDLRVCGVANSKALLTNVHGLN----LENWQEELAQ 527
  66               G +G   LE   R+QS L  +   +  + GV +S+  L +  GL+    L  + +E  +
  67 Sbjct:   466 KGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVE 525
  68
  69 Query:   528 AKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMD 587
  70                E      L   ++ +   + V++D T+SQ +ADQY DF   GFHV++ NK A  S  +
  71 Sbjct:   526 QDEE----SLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSN 581
  72
  73 Query:   588 YYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKL 647
  74               Y Q+  A EK+ R +LY+  VGAGLP+   +++L+++GD ++  SGI SG+LS++F +
  75 Sbjct:   582 KYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQF 641
  76
  77 Query:   648 DEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPA 707
  78              D  + F+E    A + G TEPDPRDDLSG DV RKL+ILARE G  +E   + +E ++PA
  79 Sbjct:   642 DGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPA 701
  80
  81 Query:   708 EFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDP 767
  82                   G +  F  N  +L++    R+  AR+ G VLRYV   D +G  RV +  V  + P
  83 Sbjct:   702 HCEG-GSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHP 760
  84
  85 Query:   768 LFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR 812
  86              L  +   +N  A  S +Y+  PLV+RG GAG DVTA  + +D+ R
  87 Sbjct:   761 LASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINR 805
  88
  89
  90 Parameters:
  91   E=0.01
  92
  93   ctxfactor=1.00
  94
  95   Query                        -----  As Used  -----    -----  Computed  ----
  96   Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
  97    +0      0   BLOSUM62        0.319   0.136   0.384    same    same    same
  98                Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
  99
 100   Query
 101   Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
 102    +0      0      820       820     0.010  93 3  11 22  0.19    34
 103                                                     37  0.22    37
 104
 105
 106 Statistics:
 107
 108   Database:  /home/jes12/db/ecoli.aa
 109    Title:  ecoli.aa
 110    Posted:  2:52:35 PM EST Nov 18, 2001
 111    Created:  9:46:47 AM EST Nov 18, 2001
 112    Format:  XDF-1
 113    # of letters in database:  1,358,990
 114    # of sequences in database:  4289
 115    # of database sequences satisfying E:  4
 116   No. of states in DFA:  573 (61 KB)
 117   Total size of DFA:  281 KB (1149 KB)
 118   Time to generate neighborhood:  0.00u 0.02s 0.02t  Elapsed: 00:00:00
 119   No. of threads or processors used:  1
 120   Search cpu time:  1.58u 0.00s 1.58t  Elapsed: 00:00:01
 121   Total cpu time:  1.59u 0.02s 1.61t  Elapsed: 00:00:01
 122   Start:  Thu Dec  6 11:09:14 2001   End:  Thu Dec  6 11:09:15 2001