| blob | 4125cf523660d9d7bfc666327d60fafc265d8ed0 |
1 BLASTN 2.2.14 [May-07-2006]\r
2 \r
3 \r
4 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, \r
5 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), \r
6 "Gapped BLAST and PSI-BLAST: a new generation of protein database search\r
7 programs", Nucleic Acids Res. 25:3389-3402.\r
8 Database: LTR_STRUC_8x_na \r
9 791 sequences; 6,808,925 total letters\r
10 \r
11 Searching\r
12 \r
13 Query= jgi|Phypa1|75037|fgenesh1_pg.scaffold_51000008\r
14 (2511 letters)\r
15 \r
16 \r
17 \r
18 Score E\r
19 Sequences producing significant alignments: (bits) Value\r
20 \r
21 scaffold_5_1_Scaffolds_seq10928_PT_B1_L1_270_rprt_txt 1356 0.0 \r
22 \r
23 >scaffold_5_1_Scaffolds_seq10928_PT_B1_L1_270_rprt_txt\r
24 Length = 16463\r
25 \r
26 Score = 1356 bits (684), Expect = 0.0\r
27 Identities = 684/684 (100%)\r
28 Strand = Plus / Plus\r
29 \r
30 \r
31 Query: 1088 ctacaatacgaggtacaataggttgggaggatcctgttgaatctctttcagttcatgcat 1147\r
32 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
33 Sbjct: 8914 ctacaatacgaggtacaataggttgggaggatcctgttgaatctctttcagttcatgcat 8973\r
34 \r
35 \r
36 Query: 1148 atattgctaagagccaacatgaagctttgatggaagaaaagaaacgaggaaattttgatg 1207\r
37 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
38 Sbjct: 8974 atattgctaagagccaacatgaagctttgatggaagaaaagaaacgaggaaattttgatg 9033\r
39 \r
40 \r
41 Query: 1208 atacgagagaaggaaattcttctaagaggcaaactcgaggagacaaggctcgggaggcag 1267\r
42 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
43 Sbjct: 9034 atacgagagaaggaaattcttctaagaggcaaactcgaggagacaaggctcgggaggcag 9093\r
44 \r
45 \r
46 Query: 1268 cttcacaagaattgcctctaaaggatacctcaacatcattggaagaaaaaacaagggaga 1327\r
47 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
48 Sbjct: 9094 cttcacaagaattgcctctaaaggatacctcaacatcattggaagaaaaaacaagggaga 9153\r
49 \r
50 \r
51 Query: 1328 caaatgataagggcaaatcaattgcttataaactactttctgacattgaagtggcaacaa 1387\r
52 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
53 Sbjct: 9154 caaatgataagggcaaatcaattgcttataaactactttctgacattgaagtggcaacaa 9213\r
54 \r
55 \r
56 Query: 1388 atttgaaaggggtgttggaagaacgtatattaaatgctaaggtggaattcacattgaaag 1447\r
57 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
58 Sbjct: 9214 atttgaaaggggtgttggaagaacgtatattaaatgctaaggtggaattcacattgaaag 9273\r
59 \r
60 \r
61 Query: 1448 aagttttggaaattgcaaagaaggagtttcatgatgttatcattgacagcattaagcaaa 1507\r
62 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
63 Sbjct: 9274 aagttttggaaattgcaaagaaggagtttcatgatgttatcattgacagcattaagcaaa 9333\r
64 \r
65 \r
66 Query: 1508 agagaaaattaatggacaaaactggaatgagtcatactattgatgcaagaatatataaag 1567\r
67 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
68 Sbjct: 9334 agagaaaattaatggacaaaactggaatgagtcatactattgatgcaagaatatataaag 9393\r
69 \r
70 \r
71 Query: 1568 atgaagaagaggttgatattggttacaagcaactaaaaaatgaaaagaataggtataatc 1627\r
72 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
73 Sbjct: 9394 atgaagaagaggttgatattggttacaagcaactaaaaaatgaaaagaataggtataatc 9453\r
74 \r
75 \r
76 Query: 1628 aacgaatacgttttgaagattatattgataaggaaatggaaaccttgagccattatactc 1687\r
77 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
78 Sbjct: 9454 aacgaatacgttttgaagattatattgataaggaaatggaaaccttgagccattatactc 9513\r
79 \r
80 \r
81 Query: 1688 gaaagcattggacaagagcaactaatgaggtattggtgaaagtaggagatatagaagaac 1747\r
82 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
83 Sbjct: 9514 gaaagcattggacaagagcaactaatgaggtattggtgaaagtaggagatatagaagaac 9573\r
84 \r
85 \r
86 Query: 1748 caattgttgttttagttgaccatg 1771\r
87 ||||||||||||||||||||||||\r
88 Sbjct: 9574 caattgttgttttagttgaccatg 9597\r
89 \r
90 \r
91 \r
92 Score = 1154 bits (582), Expect = 0.0\r
93 Identities = 582/582 (100%)\r
94 Strand = Plus / Plus\r
95 \r
96 \r
97 Query: 1930 ccagattatggaggtacaaaagaggaggtactctctcgagatgaaggtgccattgatgta 1989\r
98 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
99 Sbjct: 10015 ccagattatggaggtacaaaagaggaggtactctctcgagatgaaggtgccattgatgta 10074\r
100 \r
101 \r
102 Query: 1990 agttttattggtattttggagaatgaaaatattatgtataagaaagttgatgattttaaa 2049\r
103 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
104 Sbjct: 10075 agttttattggtattttggagaatgaaaatattatgtataagaaagttgatgattttaaa 10134\r
105 \r
106 \r
107 Query: 2050 agaaaagaaagaaaaaaaatatatcatattgaaggagaattatgcaagttaggtacattg 2109\r
108 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
109 Sbjct: 10135 agaaaagaaagaaaaaaaatatatcatattgaaggagaattatgcaagttaggtacattg 10194\r
110 \r
111 \r
112 Query: 2110 caagatgatgagaggattttaggtgtttatgaagaaaatgggctggaagattcattggaa 2169\r
113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
114 Sbjct: 10195 caagatgatgagaggattttaggtgtttatgaagaaaatgggctggaagattcattggaa 10254\r
115 \r
116 \r
117 Query: 2170 ttgattacatctattcggttagaagataatgataagattgttgagattcattcgaaagaa 2229\r
118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
119 Sbjct: 10255 ttgattacatctattcggttagaagataatgataagattgttgagattcattcgaaagaa 10314\r
120 \r
121 \r
122 Query: 2230 gtttataccatacttgaatcttttcaagcaccagaagtcactatagagacaagatataaa 2289\r
123 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
124 Sbjct: 10315 gtttataccatacttgaatcttttcaagcaccagaagtcactatagagacaagatataaa 10374\r
125 \r
126 \r
127 Query: 2290 atggcagataagaagataaagcctgttgccggaccattaccaaaagattctaaggaacaa 2349\r
128 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
129 Sbjct: 10375 atggcagataagaagataaagcctgttgccggaccattaccaaaagattctaaggaacaa 10434\r
130 \r
131 \r
132 Query: 2350 atgggagaagaatcaaaagaagcaagtttaagggatccaatgagtattggacatcagttt 2409\r
133 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
134 Sbjct: 10435 atgggagaagaatcaaaagaagcaagtttaagggatccaatgagtattggacatcagttt 10494\r
135 \r
136 \r
137 Query: 2410 actaaagagacttttgaagaattgaagattgattctgatggttctttattgccggaagaa 2469\r
138 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
139 Sbjct: 10495 actaaagagacttttgaagaattgaagattgattctgatggttctttattgccggaagaa 10554\r
140 \r
141 \r
142 Query: 2470 attacttacttcaaaaagatgttggctaaacaaggtagatag 2511\r
143 ||||||||||||||||||||||||||||||||||||||||||\r
144 Sbjct: 10555 attacttacttcaaaaagatgttggctaaacaaggtagatag 10596\r
145 \r
146 \r
147 \r
148 Score = 918 bits (463), Expect = 0.0\r
149 Identities = 463/463 (100%)\r
150 Strand = Plus / Plus\r
151 \r
152 \r
153 Query: 336 ggaatatttcaaggtatttacgataccaaagataagagaccatattacattgattacgga 395\r
154 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
155 Sbjct: 7931 ggaatatttcaaggtatttacgataccaaagataagagaccatattacattgattacgga 7990\r
156 \r
157 \r
158 Query: 396 tcgttatggaaattcatgggaggttttttcacatgcattgaaagatgaatatttcttgga 455\r
159 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
160 Sbjct: 7991 tcgttatggaaattcatgggaggttttttcacatgcattgaaagatgaatatttcttgga 8050\r
161 \r
162 \r
163 Query: 456 agatgctgatcacattactaagaagttgtttctggaatggattgaacggcctaataagaa 515\r
164 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
165 Sbjct: 8051 agatgctgatcacattactaagaagttgtttctggaatggattgaacggcctaataagaa 8110\r
166 \r
167 \r
168 Query: 516 tttacaagcaacagagctactaagggaatttgagaggcagtactctcaattattgaaggt 575\r
169 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
170 Sbjct: 8111 tttacaagcaacagagctactaagggaatttgagaggcagtactctcaattattgaaggt 8170\r
171 \r
172 \r
173 Query: 576 agaaaaattgacattggagccgaacaaatttgatctatttcttcaagctgctgatggaga 635\r
174 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
175 Sbjct: 8171 agaaaaattgacattggagccgaacaaatttgatctatttcttcaagctgctgatggaga 8230\r
176 \r
177 \r
178 Query: 636 attgcaagggaaattagaattccttcttgaagacaaagaagaaggtgaaggattgacaac 695\r
179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
180 Sbjct: 8231 attgcaagggaaattagaattccttcttgaagacaaagaagaaggtgaaggattgacaac 8290\r
181 \r
182 \r
183 Query: 696 aaagtggaagaacattgaagatgcggtggagttgcttacaaaaagagaaaggaggaaaga 755\r
184 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
185 Sbjct: 8291 aaagtggaagaacattgaagatgcggtggagttgcttacaaaaagagaaaggaggaaaga 8350\r
186 \r
187 \r
188 Query: 756 taggagtaatattccgaaaatagtacaagcacccaaagctcca 798\r
189 |||||||||||||||||||||||||||||||||||||||||||\r
190 Sbjct: 8351 taggagtaatattccgaaaatagtacaagcacccaaagctcca 8393\r
191 \r
192 \r
193 \r
194 Score = 573 bits (289), Expect = e-163\r
195 Identities = 289/289 (100%)\r
196 Strand = Plus / Plus\r
197 \r
198 \r
199 Query: 799 aatgtttcaaaacaaggatatgtacaaagatgcatttggtgtgatgatgctttatacact 858\r
200 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
201 Sbjct: 8550 aatgtttcaaaacaaggatatgtacaaagatgcatttggtgtgatgatgctttatacact 8609\r
202 \r
203 \r
204 Query: 859 aggaaagattgcaatgaatttaataatatgatacggcaaggaattatttgctggaaagat 918\r
205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
206 Sbjct: 8610 aggaaagattgcaatgaatttaataatatgatacggcaaggaattatttgctggaaagat 8669\r
207 \r
208 \r
209 Query: 919 ggaaagatagcattaaaagatagggaggatcttcttctaaccaactttgacaagagagga 978\r
210 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
211 Sbjct: 8670 ggaaagatagcattaaaagatagggaggatcttcttctaaccaactttgacaagagagga 8729\r
212 \r
213 \r
214 Query: 979 atgagagcattggttcaagattacttaaaagagcatgaaacagcagcacgagaaagtaca 1038\r
215 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
216 Sbjct: 8730 atgagagcattggttcaagattacttaaaagagcatgaaacagcagcacgagaaagtaca 8789\r
217 \r
218 \r
219 Query: 1039 agttatggtgctagagtagatgatgaccttagtggaagtacggaaacta 1087\r
220 |||||||||||||||||||||||||||||||||||||||||||||||||\r
221 Sbjct: 8790 agttatggtgctagagtagatgatgaccttagtggaagtacggaaacta 8838\r
222 \r
223 \r
224 \r
225 Score = 315 bits (159), Expect = 2e-85\r
226 Identities = 159/159 (100%)\r
227 Strand = Plus / Plus\r
228 \r
229 \r
230 Query: 1771 gctaataacacatggggcgaattatatggagctcgtccagatgtcaaaatttggattggg 1830\r
231 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
232 Sbjct: 9684 gctaataacacatggggcgaattatatggagctcgtccagatgtcaaaatttggattggg 9743\r
233 \r
234 \r
235 Query: 1831 gatgttgcgacggagcaacatttctttgttcaagatacaacgtcttatccgttgatttta 1890\r
236 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
237 Sbjct: 9744 gatgttgcgacggagcaacatttctttgttcaagatacaacgtcttatccgttgatttta 9803\r
238 \r
239 \r
240 Query: 1891 gaacaaccttatattatggcaatacggatggaaacaaaa 1929\r
241 |||||||||||||||||||||||||||||||||||||||\r
242 Sbjct: 9804 gaacaaccttatattatggcaatacggatggaaacaaaa 9842\r
243 \r
244 \r
245 \r
246 Score = 230 bits (116), Expect = 7e-60\r
247 Identities = 116/116 (100%)\r
248 Strand = Plus / Plus\r
249 \r
250 \r
251 Query: 95 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 154\r
252 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
253 Sbjct: 7360 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 7419\r
254 \r
255 \r
256 Query: 155 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 210\r
257 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
258 Sbjct: 7420 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 7475\r
259 \r
260 \r
261 \r
262 Score = 186 bits (94), Expect = 1e-46\r
263 Identities = 94/94 (100%)\r
264 Strand = Plus / Plus\r
265 \r
266 \r
267 Query: 1 atggtgtttaattgggcagcttatgtagcaactcgtattcatgcggaaatgggagccaag 60\r
268 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
269 Sbjct: 6461 atggtgtttaattgggcagcttatgtagcaactcgtattcatgcggaaatgggagccaag 6520\r
270 \r
271 \r
272 Query: 61 tgcaaaatagagaagtttacagtgttgtcgtatt 94\r
273 ||||||||||||||||||||||||||||||||||\r
274 Sbjct: 6521 tgcaaaatagagaagtttacagtgttgtcgtatt 6554\r
275 \r
276 \r
277 \r
278 Score = 182 bits (92), Expect = 2e-45\r
279 Identities = 110/116 (94%)\r
280 Strand = Plus / Plus\r
281 \r
282 \r
283 Query: 95 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 154\r
284 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
285 Sbjct: 14136 acagtcagtggatacaagatcgtgagtataaagcggtatcgaagattagcagattgggtt 14195\r
286 \r
287 \r
288 Query: 155 gttcgggattctttgtaacgtctagagacctaccggctgaggcaaaaaggattttg 210\r
289 ||||||| |||| ||||| ||||||||||||||| |||| | ||||||||||||||\r
290 Sbjct: 14196 gttcggggttctctgtaatgtctagagacctaccagctgggacaaaaaggattttg 14251\r
291 \r
292 \r
293 \r
294 Score = 139 bits (70), Expect = 2e-32\r
295 Identities = 70/70 (100%)\r
296 Strand = Plus / Plus\r
297 \r
298 \r
299 Query: 210 gagaacgaaaataaaaattttgaaggatctttgggaggagtttctggtggaggttcttct 269\r
300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
301 Sbjct: 7717 gagaacgaaaataaaaattttgaaggatctttgggaggagtttctggtggaggttcttct 7776\r
302 \r
303 \r
304 Query: 270 caaggacaag 279\r
305 ||||||||||\r
306 Sbjct: 7777 caaggacaag 7786\r
307 \r
308 \r
309 \r
310 Score = 119 bits (60), Expect = 2e-26\r
311 Identities = 60/60 (100%)\r
312 Strand = Plus / Plus\r
313 \r
314 \r
315 Query: 278 agcaacagcaaagcaatgatcaagaggaagctttggcaaccaaagcattgcaagcagtgg 337\r
316 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\r
317 Sbjct: 7844 agcaacagcaaagcaatgatcaagaggaagctttggcaaccaaagcattgcaagcagtgg 7903\r
318 \r
319 \r
320 Database: LTR_STRUC_8x_na\r
321 Posted date: Sep 4, 2006 3:29 PM\r
322 Number of letters in database: 6,808,925\r
323 Number of sequences in database: 791\r
324 \r
325 Lambda K H\r
326 1.37 0.711 1.31 \r
327 \r
328 Gapped\r
329 Lambda K H\r
330 1.37 0.711 1.31 \r
331 \r
332 \r
333 Matrix: blastn matrix:1 -3\r
334 Gap Penalties: Existence: 5, Extension: 2\r
335 Number of Sequences: 791\r
336 Number of Hits to DB: 350,368\r
337 Number of extensions: 23312\r
338 Number of successful extensions: 1851\r
339 Number of sequences better than 1.0e-04: 233\r
340 Number of HSP's gapped: 1699\r
341 Number of HSP's successfully gapped: 1236\r
342 Length of query: 2511\r
343 Length of database: 6,808,925\r
344 Length adjustment: 17\r
345 Effective length of query: 2494\r
346 Effective length of database: 6,795,478\r
347 Effective search space: 16947922132\r
348 Effective search space used: 16947922132\r
349 X1: 11 (21.8 bits)\r
350 X2: 15 (29.7 bits)\r
351 X3: 25 (49.6 bits)\r
352 S1: 15 (30.2 bits)\r
353 S2: 24 (48.1 bits)\r
354 \r
355 \r
356 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, \r
357 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), \r
358 "Gapped BLAST and PSI-BLAST: a new generation of protein database search\r
359 programs", Nucleic Acids Res. 25:3389-3402.\r
360 Database: LTR_STRUC_8x_na \r
361 791 sequences; 6,808,925 total letters\r
362 \r
363 Searching\r
364 \r
365 Query= jgi|Phypa1|96131|fgenesh1_pg.scaffold_296000015\r
366 (456 letters)\r
367 \r
368 \r
369 \r
370 Score E\r
371 Sequences producing significant alignments: (bits) Value\r
372 \r
373 scaffold_5_6_Scaffolds_seq_8392_PT_B8_L9_282_rprt_txt 276 2e-74\r
374 \r
375 >scaffold_5_6_Scaffolds_seq_8392_PT_B8_L9_282_rprt_txt\r
376 Length = 8149\r
377 \r
378 Score = 276 bits (139), Expect = 2e-74\r
379 Identities = 157/163 (96%)\r
380 Strand = Plus / Minus\r
381 \r
382 \r
383 Query: 1 atgaatatgaaagaccttaatgaaggtacagagattccacagcaaaaagatgaaagtgat 60\r
384 ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||\r
385 Sbjct: 1524 atgaatatggaagaccttaatgaaggtacagagattccgcagcaagaagatgaaagtgat 1465\r
386 \r
387 \r
388 Query: 61 atggataatgaaggtgacgaagacgaactggacaaagacgtaggggatatattcagaatc 120\r
389 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||\r
390 Sbjct: 1464 atggataatgaaggtgacgaagacgaactggacaaagacgtaggggatatattctgaatc 1405\r
391 \r
392 \r
393 Query: 121 aaacagcaattgggtaaattggtgcataccggaggatgcacag 163\r
394 ||| ||||||||| |||||||||||||||||||||||||||||\r
395 Sbjct: 1404 aaatagcaattggataaattggtgcataccggaggatgcacag 1362\r
396 \r
397 \r
398 \r
399 Score = 151 bits (76), Expect = 9e-37\r
400 Identities = 100/108 (92%)\r
401 Strand = Plus / Minus\r
402 \r
403 \r
404 Query: 164 tcgtttatattccagcagtcaaaactgatagactgcttgactatcgacgaatctccatac 223\r
405 ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||\r
406 Sbjct: 6919 tcgtttatattccagcagtaaaaactgatagactgcttgactatcggcggatctccatac 6860\r
407 \r
408 \r
409 Query: 224 taccttctacagctagacgcccgacgcgttctcgagcaggaaagcacg 271\r
410 ||||||||| ||| ||| ||||| ||||||||||||||||| ||||||\r
411 Sbjct: 6859 taccttctagagccagaggcccggcgcgttctcgagcaggagagcacg 6812\r
412 \r
413 \r
414 \r
415 Score = 143 bits (72), Expect = 2e-34\r
416 Identities = 96/104 (92%)\r
417 Strand = Plus / Minus\r
418 \r
419 \r
420 Query: 161 cagtcgtttatattccagcagtcaaaactgatagactgcttgactatcgacgaatctcca 220\r
421 |||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||\r
422 Sbjct: 120 cagtcgtttatatttcagcagtaaaaactgatagactgcttgactatcggcggatctcca 61\r
423 \r
424 \r
425 Query: 221 tactaccttctacagctagacgcccgacgcgttctcgagcagga 264\r
426 |||||||||||| ||| ||||||||| | |||||||||||||||\r
427 Sbjct: 60 tactaccttctagagccagacgcccggctcgttctcgagcagga 17\r
428 \r
429 \r
430 \r
431 Score = 60.0 bits (30), Expect = 3e-09\r
432 Identities = 42/46 (91%)\r
433 Strand = Plus / Minus\r
434 \r
435 \r
436 Query: 312 ggagccaattctagatccaagacggaagattgaagaaattcagagg 357\r
437 ||||||||||| |||| |||| |||||||||||||||||||||||\r
438 Sbjct: 739 ggagccaattccggatctaagatggaagattgaagaaattcagagg 694\r
439 \r
440 \r
441 \r
442 Score = 52.0 bits (26), Expect = 6e-07\r
443 Identities = 41/46 (89%)\r
444 Strand = Plus / Minus\r
445 \r
446 \r
447 Query: 312 ggagccaattctagatccaagacggaagattgaagaaattcagagg 357\r
448 |||||||||| |||| |||| |||||||||||||||||||||||\r
449 Sbjct: 7543 ggagccaatttcggatctaagatggaagattgaagaaattcagagg 7498\r
450 \r
451 \r
452 Database: LTR_STRUC_8x_na\r
453 Posted date: Sep 4, 2006 3:29 PM\r
454 Number of letters in database: 6,808,925\r
455 Number of sequences in database: 791\r
456 \r
457 Lambda K H\r
458 1.37 0.711 1.31 \r
459 \r
460 Gapped\r
461 Lambda K H\r
462 1.37 0.711 1.31 \r
463 \r
464 \r
465 Matrix: blastn matrix:1 -3\r
466 Gap Penalties: Existence: 5, Extension: 2\r
467 Number of Sequences: 791\r
468 Number of Hits to DB: 50,062\r
469 Number of extensions: 3603\r
470 Number of successful extensions: 1243\r
471 Number of sequences better than 1.0e-04: 157\r
472 Number of HSP's gapped: 985\r
473 Number of HSP's successfully gapped: 621\r
474 Length of query: 456\r
475 Length of database: 6,808,925\r
476 Length adjustment: 16\r
477 Effective length of query: 440\r
478 Effective length of database: 6,796,269\r
479 Effective search space: 2990358360\r
480 Effective search space used: 2990358360\r
481 X1: 11 (21.8 bits)\r
482 X2: 15 (29.7 bits)\r
483 X3: 25 (49.6 bits)\r
484 S1: 14 (28.2 bits)\r
485 S2: 23 (46.1 bits)\r