t/data/sparsealn.needle

   1 ########################################
   2 # Program:  needle
   3 # Rundate:  Wed Mar 13 14:01:53 2002
   4 # Report_file: out.water
   5 ########################################
   6 #=======================================
   7 #
   8 # Aligned_sequences: 2
   9 # 1: KV1K_HUMAN
  10 # 2: IF1Y_HUMAN
  11 # Matrix: EBLOSUM62
  12 # Gap_penalty: 10.0
  13 # Extend_penalty: 0.5
  14 #
  15 # Length: 238
  16 # Identity:       5/238 ( 2.1%)
  17 # Similarity:     9/238 ( 3.8%)
  18 # Gaps:         225/238 (94.5%)
  19 # Score: 18.0
  20 #
  21 #
  22 #=======================================
  23
  24 KV1K_HUMAN         1 DIQMTQSPSTLSVSVGDRVTITCEASQTVLSYLNWYQQKPGKAPKLLIYA     50
  25
  26 IF1Y_HUMAN         1                                                         0
  27
  28 KV1K_HUMAN        51 ASSLETGVPSRFSGQGSGTBFTFTISSVZPZBFATYYCQZYLDLPRTFGQ    100
  29                                                                  |:..|:
  30 IF1Y_HUMAN         1                                             PKNKGK      6
  31
  32 KV1K_HUMAN       101 GTKVDLKR                                              108
  33                      |.| :.:|
  34 IF1Y_HUMAN         7 GGK-NRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVK     55
  35
  36 KV1K_HUMAN       109                                                       108
  37
  38 IF1Y_HUMAN        56 RLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAY    105
  39
  40 KV1K_HUMAN       109                                           108
  41
  42 IF1Y_HUMAN       106 GGLPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI    143