repo.or.cz
/
bioperl-live.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
maint: fix multiple typos identified by lintian
2017-08-30
C
a
rnë Draug
m
a
in
t
: fix multiple typos i
d
e
n
t
ified by lin
t
ian
commit
|
commitdiff
|
tree
2015-11-29
Car
n
ë Draug
bp_pairwise_kaks
.
p
l: do not mix spac
e
and tabs for
.
.
.
commit
|
commitdiff
|
tree
2013-11-26
Carn
ë
Draug
Bio::Align::Utilit
i
e
s
- rem
o
ve usage o
f
/r o
p
t
i
on to
.
.
.
commit
|
commitdiff
|
tree
2013-11-26
Car
n
ë Draug
Fix nonsense in code comments
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë Draug
Bio::A
l
ig
n
::Util
i
ties - foll
o
w
some perl best p
r
a
c
ti
c
e
s
.
commit
|
commitdiff
|
tree
2013-11-26
Carnë
D
raug
Bio::
A
lign
:
:Utilities - new func
t
ion most_common_sequ
e
nces
commit
|
commitdiff
|
tree
2013-11-26
Ca
r
në Draug
Bio::Simpl
e
Align - foll
o
w som
e
perl best pract
i
ces
commit
|
commitdiff
|
tree
2013-04-04
Carnë Draug
maint: re
m
ove files that
h
ave b
e
en m
o
ved to a sep
a
rate
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë Draug
m
a
int: update Changes af
t
er removing f
i
les from B
i
o
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë Draug
mai
n
t: remove fi
l
es that have been moved t
o
a separ
a
t
e
.
.
.
commit
|
commitdiff
|
tree
2013-04-02
Carnë D
r
aug
test
s
: mo
v
e test
s
f
rom Root to Ass
e
m
b
ly a
n
d SeqIO
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
Carnë Draug
maint: remove hard tabs
a
nd trailing wh
i
tespace
commit
|
commitdiff
|
tree
2013-03-28
Carnë Draug
tests for inheritance should
belo
n
g on
t
he chil
d
c
l
a
ss
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
C
a
rn
ë
Draug
remove hard tabs
a
n
d trailing whitespace
from some
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
Carnë
D
raug
Annotation:
f
ix typ
o
on tes
t
commit
|
commitdiff
|
tree
2013-03-26
Carnë Draug
Bio:
:
Clust
e
r::SequenceF
a
mi
l
y - bug fixes and perfo
r
m
a
n
ce
commit
|
commitdiff
|
tree
2013-03-26
C
a
rnë Draug
doc: fix i
n
d
entation, re
m
ove hard tabs and traili
n
g
.
.
.
commit
|
commitdiff
|
tree
2013-03-21
Carnë Draug
recover Ge
n
eric
W
ebAgent from
B
io-
E
Utilities
commit
|
commitdiff
|
tree
2013-03-13
Carnë Draug
split Bio-Bibl
i
o into a se
p
arate di
s
tribution
commit
|
commitdiff
|
tree
2013-03-12
Carnë Dr
a
ug
Merge
pull
r
equest #53 from bvaisvil/mast
e
r
commit
|
commitdiff
|
tree
2013-03-06
Carnë
D
r
a
ug
Bio::Perl - fix indenta
t
ion (rem
o
ve tabs, and weird
.
.
.
commit
|
commitdiff
|
tree
2013-03-04
Carnë Draug
Don'
t
use a separ
a
te def
a
ult sc
a
l
a
r when there's
a
.
.
.
commit
|
commitdiff
|
tree
2013-03-04
Carnë
D
raug
f
ollow
p
erl recommend
a
tions:
commit
|
commitdiff
|
tree
2013-03-04
Carnë Draug
fi
x
i
n
dentation (remove tabs, an
d
weir
d
3 space
s
inden
t
a
t
ion
)
commit
|
commitdiff
|
tree
2013-03-04
Car
n
ë D
r
aug
follow perl recommendations:
commit
|
commitdiff
|
tree
2013-03-04
C
a
rnë Draug
use until ins
t
ea
d
of wh
i
le
(
1){last if
.
.
.
}
commit
|
commitdiff
|
tree
2013-03-04
Carnë D
r
aug
f
i
x in
d
e
nta
t
ion (remove tabs, 3 space and 2 space
inden
t
ation)
commit
|
commitdiff
|
tree
2013-02-11
C
a
rnë Draug
removing Bio::Fe
a
tureIO and Bi
o
:
:Se
q
Fea
t
u
r
e::Annotated
.
.
.
commit
|
commitdiff
|
tree
2013-02-06
Ca
r
n
ë
Draug
maint: m
e
ntion
r
e
cent
changes to Bi
o
::SeqIO::fasta
commit
|
commitdiff
|
tree
2013-02-06
Carnë Draug
Bio::
S
eqIO::fasta - remove packag
e
v
a
r
iables for def
a
ults
commit
|
commitdiff
|
tree
2013-02-05
Carnë
Draug
Bio
:
:SeqIO
:
:
f
asta
-
impl
e
ment block meth
o
d for
p
retty
.
.
.
commit
|
commitdiff
|
tree
2013-02-05
Carn
ë
Dra
u
g
follow per
l
re
c
ommen
d
ations:
commit
|
commitdiff
|
tree
2013-01-28
Ca
r
n
ë
Draug
f
inish moving the Bio-DB-EUtil
i
t
i
e
s
to the Bio-
E
Utilities
.
.
.
commit
|
commitdiff
|
tree
2013-01-28
Carnë Draug
F
ixing
P
OD
d
o
c
umentati
o
n
.
E
m
pty line before =cut
t
o
.
.
.
commit
|
commitdiff
|
tree
2011-09-28
Carnë Dr
a
ug
ge
n
b
ank_ref_extract
o
r: move 'r
e
quire's to GetOpti
o
n
s
.
.
.
commit
|
commitdiff
|
tree
2011-09-28
Carnë Draug
g
enbank
_
ref_extractor: changed default
assem
b
ly r
e
g
ex
commit
|
commitdiff
|
tree
2011-09-28
Carnë D
r
au
g
genban
k
_ref_extractor: small typ
o
on document
a
t
i
on
commit
|
commitdiff
|
tree
2011-09-28
Carnë Draug
ge
n
bank_r
e
f_extractor: added assembly to exp
o
r
ted dat
a
commit
|
commitdiff
|
tree
2011-09-22
Carnë Draug
g
e
n
bank_ref_
e
xtr
a
ct
o
r: ty
p
o
on all instances o
f
var
.
.
.
commit
|
commitdiff
|
tree
2011-09-22
C
arn
ë
Draug
ge
n
bank_ref_extrac
t
or: small
fixes on POD documentation
commit
|
commitdiff
|
tree
2011-09-21
Carnë Dra
u
g
genbank
_
ref
_
e
xtractor:
new sc
r
ipt to m
a
k
e
s
e
arch on
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Carnë Draug
F
ix bug when u
s
ing STDOUT o
r
writing to file wit
h
out
.
.
.
commit
|
commitdiff
|
tree
2011-07-25
Carnë
D
raug
Improvements to POD
commit
|
commitdiff
|
tree
2011-07-25
Car
n
ë Draug
r
e
p
laced
i
dentation tabs for spaces
commit
|
commitdiff
|
tree
2011-07-25
Car
n
ë Draug
Don't mess with
$
^W
.
C
o
ntrol with warnings pragm
a
instead
commit
|
commitdiff
|
tree
2011-07-25
Ca
r
në
D
r
a
ug
scripts: added
'us
e
war
n
ings' to all s
c
ripts witho
u
t it
commit
|
commitdiff
|
tree
2011-07-25
Carnë Draug
scripts:
r
ep
l
aced -w switch b
y
use war
n
ings
commit
|
commitdiff
|
tree
2011-07-20
Carnë Draug
Scri
p
t
docume
n
tation fix
t
o match their names w
i
th
.
.
.
commit
|
commitdiff
|
tree
2011-07-19
Carnë
Drau
g
Renamed all scri
p
ts with
p
rfix bp_
commit
|
commitdiff
|
tree